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Metabarcoding is powerful yet still blind: a comparative analysis of morphological and molecular surveys of seagrass communities ArchiMer
Cowart, Dominique A.; Pinheiro, Miguel; Mouchel, Olivier; Maguer, Marion; Grall, Jacques; Mine, Jacques; Arnaud-haond, Sophie.
In the context of the sixth wave of extinction, reliable surveys of biodiversity are increasingly needed to infer the cause and consequences of species and community declines, identify early warning indicators of tipping points, and provide reliable impact assessments before engaging in activities with potential environmental hazards. DNA metabarcoding has emerged as having potential to provide speedy assessment of community structure from environmental samples. Here we tested the reliability of metabarcoding by comparing morphological and molecular inventories of invertebrate communities associated with sea-grasses through estimates of alpha and beta diversity, as well as the identification of the most abundant taxa. Sediment samples were collected from...
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Ano: 2015 URL: https://archimer.ifremer.fr/doc/00255/36596/35164.pdf
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Comparison of benthic foraminifera and macrofaunal indicators of the impact of oil-based drill mud disposal ArchiMer
Denoyelle, Marieva; Jorissen, Frans J.; Martin, Daniel; Galgani, Francois; Mine, Jacques.
We compare foraminifera and macrofauna as bio-indicators of oil-based drill mud disposal site off Congo. The most polluted sites are characterized by poor faunas, dominated by some very tolerant taxa. Slightly further from the disposal site, there is an area with strongly increased densities, heavily dominated by opportunistic taxa. Still further, macrofauna appears to be similar to that at the reference area, but the foraminiferal meiofauna still suggests a slight environmental perturbation. The foraminiferal FIEI index, based on the species distribution in the study area, appears to be more discriminative than the macrofaunal ITI index, based on a priori definitions of the trophic guilds of the various taxa. Our comparative approach allows us to point...
Tipo: Text Palavras-chave: Bio-indicators; Biotic index; Drilling mud; Foraminifera; Macrofauna.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00019/13027/10203.pdf
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