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| Registros recuperados: 16 | |
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| Brochier, Timothee; Auger, Pierre-amael; Pecquerie, Laure; Machu, Eric; Capet, Xavier; Thiaw, Modou; Mbaye, Baye Cheikh; Braham, Cheikh-baye; Ettahiri, Omar; Charouki, Najib; Sene, Ousseynou Ndaw; Werner, Francisco; Brehmer, Patrice. |
| Small pelagic fish (SPF) species are heavily exploited in eastern boundary upwelling systems (EBUS) as their transformation products are increasingly used in the world food chain. Management relies on regular monitoring, but there is a lack of robust theories for the emergence of the populations’ traits and their evolution in highly variable environments. This work aims to address existing knowledge gaps by combining physical and biogeochemical modelling with an individual life-cycle based model applied to round sardinella (Sardinella aurita) off northwest Africa, a key species for regional food security. Our approach focused on the processes responsible for seasonal migrations, spatio-temporal size-structure, and interannual biomass fluctuations.... |
| Tipo: Text |
Palavras-chave: Small pelagic fish; Sardinella aurita; Fish migration; Eastern boundary upwelling system; Individual based biophysical models; Dynamic energy budget. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00433/54433/56088.pdf |
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| Marques, Goncalo M.; Augustine, Starrlight; Lika, Konstadia; Pecquerie, Laure; Domingos, Tiago; Kooijman, Sebastiaan A. L. M.. |
| We developed new methods for parameter estimation-in-context and, with the help of 125 authors, built the AmP (Add-my-Pet) database of Dynamic Energy Budget (DEB) models, parameters and referenced underlying data for animals, where each species constitutes one database entry. The combination of DEB parameters covers all aspects of energetics throughout the full organism's life cycle, from the start of embryo development to death by aging. The species-specific parameter values capture biodiversity and can now, for the first time, be compared between animals species. An important insight brought by the AmP project is the classification of animal energetics according to a family of related DEB models that is structured on the basis of the mode of metabolic... |
| Tipo: Text |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00448/55986/72122.pdf |
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| Dambrine, Chloe; Huret, Martin; Woillez, Mathieu; Pecquerie, Laure; Allal, Francois; Servili, Arianna; De Pontual, Helene. |
| The European seabass (Dicentrarchus labrax) is a species of particular ecological and economic importance. Stock assessments have recently revealed the worrying state of the “Northern stock”, probably due to overfishing and a series of poor recruitments. The extent to which these poor recruitments are due to environmental variability is difficult to assess, as the processes driving the seabass life cycle are poorly known. Here we investigate how food availability and temperature may affect the growth and survival of wild seabass at the individual scale. To this end, we developed a bioenergetics model based on the Dynamic Energy Budget (DEB) theory. We applied it to seabass population of the Northeast Atlantic region (Bay of Biscay – English Channel area)... |
| Tipo: Text |
Palavras-chave: Dicentrarchus labrax Northeast Atlantic Dynamic Energy Budget theory Growth; Starvation Early-life stages. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00612/72397/71341.pdf |
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| Sangare, Nathanael; Lo-yat, Alain; Le Moullac, Gilles; Pecquerie, Laure; Thomas, Yoann; Beliaeff, Benoit; Andrefouet, Serge. |
| In French Polynesia black pearl farming represents one of the dominant business sectors. However, it still entirely relies on unpredictable Pinctada margaritifera spat collection success, which is itself conditioned by larval development completion. To assess the relationship between larval development and recruitment success, we studied under controlled conditions the effect of food concentration on development, growth, ingestion rate, survival and metabolic rate at the larval stage. Larvae were exposed to four different phytoplankton densities (2,5; 7,5; 15 and 30 cell.μL−1). Larvae survived equally all over the range of phytoplankton concentration with an average survival rate of 16% at the end of experiments. Food concentration significantly affected... |
| Tipo: Text |
Palavras-chave: Bivalve larvae; Pinctada margaritifera; Physiology; Energetics; Dynamic energy budget theory; Pearl farming; Aquaculture. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00476/58795/61446.pdf |
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| Sangare, Nathanael; Lo-yat, Alain; Le Moullac, Gilles; Pecquerie, Laure; Thomas, Yoann; Lefebvre, Sebastien; Le Gendre, Romain; Beliaeff, Benoit; Andréfouët, Serge. |
| The black-lipped pearl oyster (Pinctada margaritifera) is extensively farmed in French Polynesia to produce black pearls. For a sustainable management of marine resources, studying interactions between organisms and environment, and the associated factors and processes that will impact their life cycle and thus modulate population dynamics is a major research priority. Here, we describe black-lipped pearl oyster energy acquisition and use, and its control by temperature and food concentration within the Dynamic Energy Budget (DEB) theory framework. The model parametrization was based on literature data and a specific laboratory experiment. Model validation was carried out thanks to historical in-situ datasets and a dedicated field survey. Three theoretical... |
| Tipo: Text |
Palavras-chave: Bivalve; Physiology; Bioenergetics; Dynamic energy budget theory; Environmental change; Pearl farming. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00613/72469/71614.pdf |
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| Gourault, Melaine; Lavaud, Romain; Leynaert, Aude; Pecquerie, Laure; Paulet, Yves-marie; Pouvreau, Stephane. |
| The present study aimed to improve understanding of the environmental conditions influencing the reproductive cycle of the great scallop Pecten maximus in two locations in Brittany (France). We also evaluated potential consequences of future climate change for reproductive success in each site. We simulated reproductive traits (spawning occurrences and synchronicity among individuals) of P. maximus, using an existing Dynamic Energy Budget (DEB) model. To validate and test the model, we used biological and environmental datasets available for the Bay of Brest (West Brittany, France) between 1998 and 2003. We also applied the scallop DEB model in the Bay of Saint-Brieuc (North Brittany, France) for the same period (1998–2003) to compare the reproductive... |
| Tipo: Text |
Palavras-chave: Pecten maximus; DEB theory; Reproduction cycle; IPCC scenarios; Bay of Brest; Bay of Saint-Brieuc. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00458/57012/58910.pdf |
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| Fablet, Ronan; Pecquerie, Laure; De Pontual, Helene; Hoie, Hans; Millner, Richard; Mosegaard, Henrik; Kooijman, Sebastiaan A. L. M.. |
| Otoliths are biocalcified bodies connected to the sensory system in the inner ears of fish. Their layered, biorhythm-following formation provides individual records of the age, the individual history and the natural environment of extinct and living fish species. Such data are critical for ecosystem and fisheries monitoring. They however often lack validation and the poor understanding of biomineralization mechanisms has led to striking examples of misinterpretations and subsequent erroneous conclusions in fish ecology and fisheries management. Here we develop and validate a numerical model of otolith biomineralization. Based on a general bioenergetic theory, it disentangles the complex interplay between metabolic and temperature effects on... |
| Tipo: Text |
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| Ano: 2011 |
URL: http://archimer.ifremer.fr/doc/00056/16695/14163.pdf |
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| Gourault, Melaine; Petton, Sebastien; Thomas, Yoann; Pecquerie, Laure; Marques, Goncalo M.; Cassou, Christophe; Fleury, Elodie; Paulet, Yves-marie; Pouvreau, Stephane. |
| Identifying the drivers that control the reproductive success of a population is vital to forecasting the consequences of climate change in terms of distribution shift and population dynamics. In the present study, we aimed to improve our understanding of the environmental conditions that allowed the colonization of the Pacific oyster, Crassostrea gigas, in the Bay of Brest since its introduction in the 1960s. We also aimed to evaluate the potential consequences of future climate change on its reproductive success and further expansion. Three reproductive traits were defined to study the success of the reproduction: the spawning occurrence, synchronicity among individuals and individual fecundity. We simulated these traits by applying an individual-based... |
| Tipo: Text |
Palavras-chave: DEB model; IPCC scenarios; Reproductive traits; Crassostrea gigas; Bay of Brest. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00440/55188/56794.pdf |
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| Pethybridge, Heidi; Roos, David; Loizeau, Veronique; Pecquerie, Laure; Bacher, Cedric. |
| A size-structured, bioenergetics model was implemented to examine the effects of short-term environmental changes on European anchovy, Engraulis encrasicolus, in the North-western Mediterranean Sea. The model approach was based on Dynamic Energy Budget (DEB) theory and details the acquisition and allocation of energy (J d(-1)) during an organisms' full life-cycle. Model calibration was achieved using biometric data collected from the Gulf of Lions between 2002 and 2011. Bioenergetics simulations successfully captured ontogenetic and seasonal growth patterns, including active growth in spring/summer, loss of mass in autumn/winter and the timing and amplitude of multi-batch spawning events. Scenario analysis determined that vital rates (growth and fecundity)... |
| Tipo: Text |
Palavras-chave: Engraulis encrasicolus; NW Mediterranean Sea; Environmental variability; Dynamic Energy Budget theory; Growth; Fecundity. |
| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00127/23822/22490.pdf |
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| Lavaud, Romain; Thomas, Yoann; Pecquerie, Laure; Benoit, Hugues P.; Guyondet, Thomas; Flye-sainte-marie, Jonathan; Chabot, Denis. |
| Like many marine species around the globe, several stocks of Atlantic cod (Gadus morhua) live in increasingly hypoxic waters. In the Gulf of Saint Lawrence (GSL) in Canada, the deep channels traversing the semi-enclosed sea exhibit year-round hypoxia, identified as one of the limiting factor for the recovery of GSL cod in its northern part. While many individuals in the northern GSL are known to venture in deeper, warmer, and more hypoxic waters of the Gulf channels, those in the southern GSL live in a shallower, colder, and more oxygenated environment. In this study, we use the modeling framework of the Dynamic Energy Budget (DEB) theory to disentangle the effects of hypoxia, temperature and food on the life-history traits of these two populations of cod... |
| Tipo: Text |
Palavras-chave: Hypoxia; Dynamic energy budget; Atlantic cod; Growth; Temperature; Gulf of Saint-Lawrence. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00448/55966/57472.pdf |
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| Pecquerie, Laure; Fablet, Ronan; De Pontual, Helene; Bonhommeau, Sylvain; Alunno-bruscia, Marianne; Petitgas, Pierre; Kooijman, Sebastiaan A. L. M.. |
| Environmental conditions experienced by aquatic organisms are archived in biogenic carbonates such as fish otoliths, bivalve shells and coral skeletons. These calcified structures present an accretionary growth and variations in optical properties - color or opacity - that are used to reconstruct time. Full and reliable exploitation of the information extracted from these structures is, however, often limited as the metabolic processes that control their growth and their optical properties are poorly understood. Here, we propose a new modeling framework that couples both the growth of a biogenic carbonate and its optical properties with the metabolism of the organism. The model relies on well-tested properties of Dynamic Energy Budget (DEB) theory. It is... |
| Tipo: Text |
Palavras-chave: Otolith; Calcification; Metabolism; Bioenergetic model; Food reconstruction; Dynamic Energy Budget theory. |
| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00060/17082/14593.pdf |
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| Huret, Martin; Vandromme, Pieter; Petitgas, Pierre; Pecquerie, Laure. |
| Connectivity during early life stages of pelagic fish, defined here by survival probability between spawning and early juvenile habitats, depends on a combination of sufficient food availability and low predator encounter along drift trajectories. For anchovy in the Bay of Biscay, larval transport experiments throughout the spawning season suggest accumulation of early juveniles in the offshore area of the southern Bay, as well as retention over the mid-shelf at mid-latitude. However, late summer-early autumn surveys suggest presence of juveniles only in the former region. From this observation, we set up a bioenergetic individual based model to test for the effect of food availability on survival patterns. The model couples a Lagrangian transport module... |
| Tipo: Text |
Palavras-chave: Connectivity; Larval IBM; Bioenergetics; Zooplankton; Bay of Biscay; European anchovy. |
| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00105/21655/19237.pdf |
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| Pousse, Emilien; Flye-sainte-marie, Jonathan; Alunno-bruscia, Marianne; Hegaret, Helene; Rannou, Eric; Pecquerie, Laure; Marques, Goncalo M.; Thomas, Yoann; Castrec, Justine; Fabioux, Caroline; Long, Marc; Lassudrie, Malwenn; Hermabessiere, Ludovic; Amzil, Zouher; Soudant, Philippe; Jean, Fred. |
| As other filter-feeders, Crassostrea gigas can concentrate paralytic shellfish toxins (PST) by consuming dinoflagellate phytoplankton species like Alexandrium minutum. Intake of PST in oyster tissues mainly results from feeding processes, i.e. clearance rate, pre-ingestive sorting and ingestion that are directly influenced by environmental conditions (trophic sources, temperature). This study aimed to develop a mechanistic model coupling the kinetics of PST accumulation and bioenergetics in C. gigas based on Dynamic Energy Budget (DEB) theory. For the first time, the Synthesizing Units (SU) concept was applied to formalize the feeding preference of oysters between non-toxic and toxic microalgae. Toxin intake and accumulation were both dependent on the... |
| Tipo: Text |
Palavras-chave: Alexandrium minutum; Paralytic shellfish toxins (PST); Dynamic Energy Budget (DEB); Modelling; Pacific oyster. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00455/56662/58407.pdf |
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| Thomas, Yoann; Flye Sainte Marie, Jonathan; Chabot, Denis; Aguirre-velarde, Arturo; Marques, Gonçalo M; Pecquerie, Laure. |
| Hypoxia is a decrease in dissolved oxygen that causes physiological disturbances in marine fishes and invertebrates, including reduced mobility, growth rate and reproductive success, altered phenology and increased vulnerability to diseases. Under pressure from global changes such as warming or eutrophication, ocean and coastal ecosystems worldwide are becoming less oxygenated. In order to better understand the consequences of hypoxia on marine systems, there is a need for predicting hypoxia-induced changes from individual organisms to populations. By combining the effect of several stressors on species metabolic performances and life-history traits across their full life-cycle, the Dynamic Energy Budget (DEB) theory offers a suitable framework for... |
| Tipo: Text |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00473/58466/65967.pdf |
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| Registros recuperados: 16 | |
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