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| Robert Muetzelfeldt. |
| Most simulation models in ecological and environmental research are implemented as computer programs in a conventional programming language. This brief paper argues for a radically different approach, based on the representation of the model structure, relationships and equations in a declarative format (e.g. XML). Simulation code can then be generated from this, but in addition the model can be displayed and processed in a wide range of useful ways, greatly increasing the efficiency and effectiveness of the modelling process. |
| Tipo: Manuscript |
Palavras-chave: Ecology; Earth & Environment. |
| Ano: 2007 |
URL: http://precedings.nature.com/documents/17/version/1 |
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| Robert Muetzelfeldt. |
| Much academic information can be represented in a structured way and published on the web as XML documents. Such information can then be displayed in a wide variety of ways, using different XSLT stylesheets. 

This presentation presents MultiGuise, a Web application which allows any of several XML documents to be displayed using any of several stylesheets. Both the documents and the stylesheets are bookmarked in Connotea, from where MultiGuise retrieves them using a special tag. This approach means that anyone can add documents and stylesheets, simply by bookmarking them in Connotea.

The approach is illustrated primarily with environmental models represented in XML, but also with... |
| Tipo: Presentation |
Palavras-chave: Ecology; Bioinformatics; Earth & Environment. |
| Ano: 2007 |
URL: http://precedings.nature.com/documents/18/version/1 |
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| Robert Muetzelfeldt. |
| The aim of this document is to explore a unified approach to handling several of the proposed extensions to the SBML Level 3 Core specification. The approach is illustrated with reference to Simile, a modelling environment which appears to have most of the capabilities of the various SBML Level 3 package proposals which deal with model structure. Simile (http://www.simulistics.com) is a visual modelling environment for continuous systems modelling which includes the ability to handle complex disaggregation of model structure, by allowing the modeller to specify classes of object and the relationships between them.

The note is organised around the 6 packages listed on the SBML Level 3 Proposals web page... |
| Tipo: Manuscript |
Palavras-chave: Bioinformatics; Data Standards. |
| Ano: 2010 |
URL: http://precedings.nature.com/documents/4372/version/1 |
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