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| Charles Chen; Genevieve DeClerck; Terry Casstevens; Ken Youens-Clark; Jon Zhang; Doreen Ware; Pankaj Jaiswal; Susan McCouch; Edward Buckler. |
| The Genetic Diversity module of the Gramene database ("http://www.gramene.org/diversity":http://www.gramene.org/diversity) is specifically designed to handle data from high-throughput sequencing and array-based genotyping plateforms. Empowered by the Genomic Diversity and Phenotype Data Model, Gramene Genetic Diversity module provides live database connectivities of RFLP, SSR and SNP allele data, information about QTL, passport data for wild and cultivated germplasm from rice, maize, wheat, and _Arabidopsis_, and quantitative phenotypic data for some of these accessions. Large datasets of SNP variation are searchable via genomic positions of interest by SNP Query tool on a sequenced genome; and, trait associations, patterns of linkage... |
| Tipo: Manuscript |
Palavras-chave: Bioinformatics; Evolutionary Biology. |
| Ano: 2010 |
URL: http://precedings.nature.com/documents/4645/version/1 |
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| Phanchita Vejchasarn; Meredith Hanlon; Susan McCouch; Jonathan Lynch; Kathleen Brown. |
| Root anatomical traits, which include cortical area, aerenchyma area, and xylem features, influence the absorption and translocation of water and nutrients, oxygen transport and the mechanical strength of the root system. While a number of studies have shown promising functional benefits of anatomical root traits in conferring resource acquisition efficiency, very little is known about the genetic mechanisms underlying natural phenotypic variation of these traits. In this study, we evaluated 336 Oryza sativa accessions selected from the rice diversity panel for 4 root anatomical traits including, root cross-section area, aerenchyma, and xylem features in well-controlled greenhouse environment. Considerable phenotypic variation was observed in all root... |
| Tipo: Collection |
Palavras-chave: Rice; Root anatomical traits; Genome-wide association study; ข้าว; ลักษณะทางกายวิภาค; การศึกษารูปแบบความเชื่อมโยงในจีโนม. |
| Ano: 2015 |
URL: http://anchan.lib.ku.ac.th/agnet/handle/001/5918 |
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| Phanchita Vejchasarn; Meredith Hanlon; Susan McCouch; Jonathan Lynch; Kathleen Brown. |
| Root anatomical traits, which include cortical area, aerenchyma area, and xylem features, influence the absorption and translocation of water and nutrients, oxygen transport and the mechanical strength of the root system. While a number of studies have shown promising functional benefits of anatomical root traits in conferring resource acquisition efficiency, very little is known about the genetic mechanisms underlying natural phenotypic variation of these traits. In this study, we evaluated 336 Oryza sativa accessions selected from the rice diversity panel for 4 root anatomical traits including, root cross-section area, aerenchyma, and xylem features in well-controlled greenhouse environment. Considerable phenotypic variation was observed in all root... |
| Tipo: Collection |
Palavras-chave: Rice; Root anatomical traits; Genome-wide association study; ข้าว; ลักษณะทางกายวิภาค; การศึกษารูปแบบความเชื่อมโยงในจีโนม. |
| Ano: 2016 |
URL: http://anchan.lib.ku.ac.th/agnet/handle/001/5860 |
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