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| Tobias Czauderna; Christian Klukas; Astrid Junker; Falk Schreiber. |
| The recently proposed Systems Biology Graphical Notation (SBGN) provides a standard for the visual representation of biochemical and cellular processes. SBGN helps to communicate biological knowledge more efficient and accurate between different research communities in the life sciences. However, to support SBGN, methods and tools for editing, validating, and translating of SBGN maps are necessary.

We present methods for these tasks, the tool SBGN-ED, and an application example. SBGN-ED allows to create all three types of SBGN maps from scratch, to validate these maps for syntactical and semantical correctness, to translate maps from the KEGG and MetaCrop databases into SBGN, and to export SBGN maps into several file and... |
| Tipo: Poster |
Palavras-chave: Biotechnology; Bioinformatics. |
| Ano: 2010 |
URL: http://precedings.nature.com/documents/4973/version/1 |
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| Tobias Czauderna; Falk Schreiber. |
| The Systems Biology Graphical Notation - SBGN [1] provides a standard for the visual representation of biochemical and cellular processes. SBGN aims to improve information exchange and to support the collaborative creation of large maps based on individual modules. The language contains three views of biological processes covering different levels of detail:

(1) Process Description (PD): this sublanguage provides a detailed presentation of the temporal dependencies of biological interactions in a network;

(2) Entity Relationship (ER): this sublanguage displays the relationships in which a given entity can participate in a network; and

(3) Activity Flow... |
| Tipo: Presentation |
Palavras-chave: Bioinformatics; Data Standards. |
| Ano: 2011 |
URL: http://precedings.nature.com/documents/6445/version/1 |
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