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SABIO-RK: Curated Kinetic Data of Biochemical Reactions 17
Ulrike Wittig.
SABIO-RK ("http://sabio.villa-bosch.de/SABIORK/":http://sabio.villa-bosch.de/SABIORK/) is a curated, web-accessible database for modellers and wet-lab scientists to get comprehensive information about biochemical reactions and their kinetic properties. It integrates data from different origin in order to facilitate the access to reaction kinetics data and corresponding information. Since most of the kinetic data is exclusively found in the literature SABIO-RK offers data manually extracted from the literature and related information obtained from other publicly available biological databases. For instance, the kinetic data are related to reactions, organisms, tissues and cellular locations. The type of the kinetic mechanism and...
Tipo: Presentation Palavras-chave: Chemistry; Bioinformatics.
Ano: 2009 URL: http://precedings.nature.com/documents/3085/version/1
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Normalization and Matching of Chemical Compound Names 17
Martin Golebiewski; Jasmin Šarić; Henriette Engelken; Meik Bittkowski; Ulrike Wittig; Wolfgang Müller; Isabel Rojas.
The identification of a chemical compound solely based on its name requires comprehensive chemical knowledge and often extensive searches in chemical databases. However, it is crucial for the integration of biochemical data extracted from the literature, since many publications exclusively describe a compound by its name. We have developed an application which matches synonymic names of chemical compounds and thereby facilitates the bundling of corresponding data referring to the same compound.

The tool that we have developed is based on natural language processing (NLP) methods and applies rules to systematically normalize chemical compound names. Matching of synonymous names is achieved by comparison of the normalized...
Tipo: Poster Palavras-chave: Chemistry; Bioinformatics.
Ano: 2009 URL: http://precedings.nature.com/documents/3322/version/1
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