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Registros recuperados: 13
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Desulfurobacterium crinifex sp.nov., a novel thermophilic, pinkish-streamer forming, chemolithoautotrophic bacterium isolated from a Juan de Fuca Ridge hydrothermal vent and amendment of the genus Desulfurobacterium ArchiMer
Alain, Karine; Rolland, Sophie; Crassous, Philippe; Lesongeur, Francoise; Zbinden, Magali; Le Gall, Christian; Godfroy, Anne; Page, Antoine; Juniper, S Kim; Cambon-bonavita, Marie-anne; Duchiron, Francis; Querellou, Joel.
A novel thermophilic, chemolithoautotrophic T bacterium, designated as NE1206(T), was isolated from a Juan de Fuca Ridge hydrothermal vent sample (tubes of the annelid polychaete Paralvinella sulfincola attached to small pieces of hydrothermal chimney). The cells were rod-shaped (1.2-3.5x0.4-0.7 mum), occurring as single motile rods or forming macroscopic aggregates visible as pinkish to brownish streamers. The new isolate was anaerobic. It grew between 50 and 70 degreesC (optimum 60-65 degreesC doubling time approximately 1 h 15 min at 60 degreesC), between pH 5.0 and 7.5 (optimum pH around 6.0-6.5) and at sea salts concentrations between 20 and 40 g l(-1) (optimum 30 g l(-1)). Cells grew chemolithoautotrophically in an H-2/CO2 atmosphere (80/20, v/v; 200...
Tipo: Text Palavras-chave: Thermophile; Nitrate reducing; Lithotroph; Desulfurobacterium crinifex; Deep sea hydrothermal vent; Cell networks.
Ano: 2003 URL: https://archimer.ifremer.fr/doc/2003/publication-663.pdf
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Gill chamber and gut microbial communities of the hydrothermal shrimp Rimicaris chacei Williams and Rona 1986: A possible symbiosis ArchiMer
Apremont, Vincent; Cambon-bonavita, Marie-anne; Cueff-gauchard, Valerie; Francois, David; Pradillon, Florence; Corbari, Laure; Zbinden, Magali.
Rimicaris chacei Williams and Rona 1986, formerly named as Chorocaris chacei, is a caridean shrimp living in deep-sea hydrothermal ecosystems. This shrimp is endemic to the Mid Atlantic Ridge (MAR) and lives at the periphery of aggregates of its well-known congeneric R. exoculata Williams and Rona 1986. Contrasting with the very dense and mobile clusters formed by R. exoculata, R. chacei lives in small groups of several individuals that are not very mobile. Although devoid of the characteristic hypertrophied cephalothorax of R. exoculata, which harbors the ectosymbionts, a microbial community has also been reported in the cephalothorax of R. chacei. Previous data on morphology, behavior and isotopic values indicate a diet based on a combination of feeding...
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00465/57680/59880.pdf
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Bacterial symbionts and mineral deposits in the branchial chamber of the hydrothermal vent shrimp Rimicaris exoculata: relationship to moult cycle ArchiMer
Corbari, Laure; Zbinden, Magali; Cambon-bonavita, Marie-anne; Gaill, Françoise; Compere, Philippe.
The shrimp Rimicaris exoculata is considered a primary consumer that dominates the fauna of most Mid-Atlantic Ridge hydrothermal ecosystems. The shrimps harbour in their gill chamber an important ectosymbiotic community of chemoautotrophic bacteria associated with iron oxide deposits. The settlement and development of this ectosymbiosis was investigated using microscopy techniques (light microscopy, LM; and scanning, transmission and environmental scanning electron microscopy: SEM and ESEM, respectively) for shrimps from 2 different vent fields (Rainbow, 36 degrees 14.0' N and TAG, 26 degrees 08.0' N). The results revealed a bacterial re-colonisation after each exuviation and a development of the bacterial community in 5 steps in relation to the moult...
Tipo: Text Palavras-chave: Iron oxides; Ectosymbiosis; Moult cycle; Shrimp; Hydrothermal vents.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4626.pdf
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A tale of two chitons: is habitat specialisation linked to distinct associated bacterial communities? ArchiMer
Duperron, Sebastien; Pottier, Marie-anne; Leger, Nelly; Gaudron, Sylvie M.; Puillandre, Nicolas; Le Prieur, Stephanie; Sigwart, Julia D.; Ravaux, Juliette; Zbinden, Magali.
Although most chitons (Mollusca: Polyplacophora) are shallow-water molluscs, diverse species also occur in deep-sea habitats. We investigated the feeding strategies of two species, Leptochiton boucheti and Nierstraszella lineata, recovered on sunken wood sampled in the western Pacific, close to the Vanuatu Islands. The two species display distinctly different associations with bacterial partners. Leptochiton boucheti harbours Mollicutes in regions of its gut epithelium and has no abundant bacterium associated with its gill. Nierstraszella lineata displays no dense gut-associated bacteria, but harbours bacterial filaments attached to its gill epithelium, related to the Deltaproteobacteria symbionts found in gills of the wood-eating limpet Pectinodonta sp....
Tipo: Text Palavras-chave: Sunken wood; Polyplacophora; Symbiosis; Mollicutes; Deltaproteobacteria; Deep-sea ecology.
Ano: 2013 URL: https://archimer.ifremer.fr/doc/00138/24933/23035.pdf
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Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites ArchiMer
Durand, Lucile; Roumagnac, Marie; Cueff-gauchard, Valerie; Jan, Cyrielle; Guri, Mathieu; Tessier, Claire; Haond, Marine; Crassous, Philippe; Zbinden, Magali; Arnaud-haond, Sophie; Cambon-bonavita, Marie-anne.
Rimicaris exoculata is a deep-sea hydrothermal vent shrimp which enlarged gill chamber houses a complex trophic epibiotic community. Its gut harbours an autochthonous and distinct microbial community. This species dominates hydrothermal ecosystems megafauna along the Mid-Atlantic Ridge, regardless of contrasted geochemical conditions prevailing in them. Here, the resident gut epibiont community at four contrasted hydrothermal vent sites (Rainbow/TAG/Logatchev/Ashadze) was analysed and compiled with previous data to evaluate the possible influence of site location, using 16S rRNA surveys and microscopic observations (TEM, SEM and FISH analyses). Filamentous epibionts inserted between the epithelial cells microvilli were observed on all examined samples....
Tipo: Text Palavras-chave: Epibiont; Extreme environments; Network analyses; Phylogeography.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00288/39890/38443.pdf
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Microbial diversity associated with the hydrothermal shrimp Rimicaris exoculata gut and occurrence of a resident microbial community ArchiMer
Durand, Lucile; Zbinden, Magali; Cueff-gauchard, Valerie; Duperron, Sebastien; Roussel, Erwan; Shillito, Bruce; Cambon-bonavita, Marie-anne.
Rimicaris exoculata dominates the megafauna of several Mid-Atlantic Ridge hydrothermal sites. Its gut is full of sulphides and iron-oxide particles and harbours microbial communities. Although a trophic symbiosis has been suggested, their role remains unclear. In vivo starvation experiments in pressurized vessels were performed on shrimps from Rainbow and Trans-Atlantic Geotraverse sites in order to expel the transient gut contents. Microbial communities associated with the gut of starved and reference shrimps were compared using 16S rRNA gene libraries and microscopic observations (light, transmission and scanning electron microscopy and FISH analyses). We show that the gut microbiota of shrimps from both sites included mainly Deferribacteres, Mollicutes,...
Tipo: Text Palavras-chave: Deferribacteres; Midgut epibiosis; Mollicutes; Proteobacteria; Rimicaris exoculata; Starvation experiment.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00000/11142/7919.pdf
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Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata ArchiMer
Guri, Mathieu; Durand, Lucile; Cueff-gauchard, Valerie; Zbinden, Magali; Crassous, Philippe; Shillito, Bruce; Cambon-bonavita, Marie-anne.
The caridean shrimp Rimicaris exoculata dominates the fauna at several Mid-Atlantic Ridge hydrothermal vent sites. This shrimp has an enlarged gill chamber, harboring a dense ectosymbiotic community of chemoautotrophic bacteria associated with mineral oxide deposits. Until now, their acquisition is not fully understood. At three hydrothermal vent sites, we analyzed the epibionts diversity at different moult stages and also in the first stages of the shrimp life (eggs, hatched eggs (with larvae) and juveniles). Hatched eggs associated with young larvae were collected for the first time directly from gravid females at the Logachev vent site during the Serpentine cruise. An approach using 16S rRNA clone libraries, scanning and transmission electron...
Tipo: Text Palavras-chave: Symbiosis; Larvae; Methanotrophic symbiont; Rimicaris exoculata; Transmission pathways.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00072/18318/15997.pdf
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Neuroanatomy of a hydrothermal vent shrimp provides insights into the evolution of crustacean integrative brain centers ArchiMer
Machon, Julia; Krieger, Jakob; Meth, Rebecca; Zbinden, Magali; Ravaux, Juliette; Montagné, Nicolas; Chertemps, Thomas; Harzsch, Steffen.
Alvinocaridid shrimps are emblematic representatives of the deep hydrothermal vent fauna at the Mid-Atlantic Ridge. They are adapted to a mostly aphotic habitat with extreme physicochemical conditions in the vicinity of the hydrothermal fluid emissions. Here, we investigated the brain architecture of the vent shrimp Rimicaris exoculata to understand possible adaptations of its nervous system to the hydrothermal sensory landscape. Its brain is modified from the crustacean brain ground pattern by featuring relatively small visual and olfactory neuropils that contrast with well-developed higher integrative centers, the hemiellipsoid bodies. We propose that these structures in vent shrimps may fulfill functions in addition to higher order sensory processing...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00509/62108/66291.pdf
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Sunken wood from the Vanuatu Islands: identification of wood substrates and preliminary description of associated fauna ArchiMer
Pailleret, Marie; Haga, Takuma; Petit, Patricia; Prive-gill, Catherine; Saedlou, Nima; Gaill, Francoise; Zbinden, Magali.
Two trawl samples of natural sunken wood collected near Vanuatu were identified based on histological studies. Detailed descriptions were made and microphotographs of the cell types were taken, using the three classical sections (cross, tangential and radial). The botanical characters were compared first to the native flora of Vanuatu, then also to the introduced species. The possibility of transportation by ocean currents with a mainly southern and eastern direction is discussed. The first sample lacks apparent colonization marks. Its main histologic character is the presence of `paedomorphic type I rays' which relates it to the shrubby genera Fitchia (Asteraceae) and Fuchsia (Onagraceae): both are known in Polynesia but they seem not to be recorded from...
Tipo: Text Palavras-chave: Associated fauna; Botanical identification; Sunken wood; Vanuatu; Wood-boring species.
Ano: 2007 URL: https://archimer.ifremer.fr/doc/00205/31627/30048.pdf
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Long-term maintenance and public exhibition of deep-sea Hydrothermal fauna: the AbyssBox project ArchiMer
Shillito, Bruce; Ravaux, Juliette; Sarrazin, Jozee; Zbinden, Magali; Sarradin, Pierre-marie; Barthelemy, Dominique.
The AbyssBox project aims to provide the first permanent public exhibition of live deep-sea hydrothermal fauna maintained at in situ pressure. AbyssBox is a pressurized aquarium designed to function permanently. Here we present details of the project after the public exhibition functioned for more than three years at Océanopolis aquarium in Brest, France. We also describe the AbyssBox pressure aquarium, and provide data and observations on vent shrimp (Mirocaris fortunata) and crabs (Segonzacia mesatlantica) that were sampled from 1700 m depth at the Lucky Strike vent field (Mid-Atlantic Ridge) during different cruises. While mortalities exceeded 50% during the first days following sampling, the remaining animals appeared to acclimate fairly well. Some...
Tipo: Text Palavras-chave: AbyssBox; Aquaria; Aquariology; Deep waters; Hydrostatic pressure; Hydrothermal vents; Public exhibition; Scientific experiments.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00268/37967/36046.pdf
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Occurrence of Deferribacterales and Entomoplasmatales in the deep-sea Alvinocarid shrimp Rimicaris exoculata gut ArchiMer
Zbinden, Magali; Cambon-bonavita, Marie-anne.
The phylogenetic diversity of the gut microbial population of the hydrothermal shrimp Rimicaris exoculata was determined. The presence of micro-organisms in the hindgut of the shrimp was determined, and their morphology illustrated for the first time by transmission electron microscopy. DNA was extracted from the fore-, mid- and hindgut of shrimps collected at the Rainbow site, at the Mid-Atlantic Ridge, and the sequences of the small-subunit rRNA (16S rDNA) were analyzed. Seven different bacterial phylotypes were identified from the 90 clones screened. The sequences were affiliated to three major groups: epsilon-Proteobacteria (48,8%), Entomoplasmatales (23.3%) and representatives of the new phylum Deferribacteres (26.6%). These results show that the...
Tipo: Text Palavras-chave: Metal bioremediation; Indigenous gut microllora; Genetic diversity; Shrimp; Hydrothermal vent.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/2003/publication-778.pdf
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Blow Your Nose, Shrimp! Unexpectedly Dense Bacterial Communities Occur on the Antennae and Antennules of Hydrothermal Vent Shrimp ArchiMer
Zbinden, Magali; Gallet, Alison; Szafranski, Kamil M.; Machon, Julia; Ravaux, Juliette; Leger, Nelly; Duperron, Sebastien.
In crustaceans, as in other animals, perception of environmental cues is of key importance for a wide range of interactions with the environment and congeners. Chemoreception involves mainly the antennae and antennules, which carry sensilla that detect water-borne chemicals. The functional importance of these as exchange surfaces in the shrimp's sensory perception requires them to remain free of any microorganism and deposit that could impair the fixation of odorant molecules on sensory neurons. We report here the occurrence of an unexpected dense bacterial colonization on surface of the antennae and antennules of four hydrothermal vent shrimp species. Microscopic observation, qPCR and 16S rRNA barcoding reveal the abundance, diversity and taxonomic...
Tipo: Text Palavras-chave: Hydrothermal; Shrimp; Alvinocarididae; Chemosensory perception; Antennules; Bacteria; Grooming.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00484/59527/62507.pdf
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Bacterial communities associated with the wood-feeding gastropod Pectinodonta sp (Patellogastropoda, Mollusca) ArchiMer
Zbinden, Magali; Pailleret, Marie; Ravaux, Juliette; Gaudron, Sylvie M.; Hoyoux, Caroline; Lambourdiere, Josie; Waren, Anders; Lorion, Julien; Halary, Sebastien; Duperron, Sebastien.
Even though their occurrence was reported a long time ago, sunken wood ecosystems at the deep-sea floor have only recently received specific attention. Accumulations of wood fragments in the deep sea create niches for a diverse fauna, but the significance of the wood itself as a food source remains to be evaluated. Pectinodonta sp. is a patellogastropod that exclusively occurs on woody substrates, where individuals excavate deep depressions, and is thus a potential candidate for a wood-eating lifestyle. Several approaches were used on Pectinodonta sampled close to Tongoa island (Vanuatu) to investigate its dietary habits. Host carbon is most likely derived from the wood material based on stable isotopes analyses, and high cellulase activity was measured in...
Tipo: Text Palavras-chave: Sunken woods; Wood-feeding gastropod; Symbiosis; Cellulolytic activity.
Ano: 2010 URL: https://archimer.ifremer.fr/doc/00206/31687/30070.pdf
Registros recuperados: 13
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