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The catalase gene family in cucumber: genome-wide identification and organization 74
Hu,Lifang; Yang,Yingui; Jiang,Lunwei; Liu,Shiqiang.
Abstract Catalase (CAT) is a common antioxidant enzyme in almost all living organisms. Currently, detailed reports on cucumber (Cucumis sativus L.) CAT (CsCAT) genes and tissue expression profiling are limited. In the present study, four candidate CsCAT genes were identified in cucumber. Phylogenetic analysis indicated that CsCAT1-CsCAT3 are closely related to Arabidopsis AtCAT1-AtCAT3, but no obvious counterpart was observed for CsCAT4. Intron/exon structure analysis revealed that only one of the 15 positions was completely conserved. Motif analysis showed that, unlike the CAT genes of other species, none of CsCAT genes contained all 10 motifs. Expression data showed that transcripts of all of the CsCAT genes, except CsCAT4, were detected in five tissues....
Tipo: Info:eu-repo/semantics/article Palavras-chave: Cucumis sativus L.; Catalase; Phylogenetic analysis; Gene family; Motif.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300408
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Three tubulin genes of Trichoderma harzianum: alpha, beta and gamma 52
Li,Min; Yang,Qian; Song,Jinzhu.
Three tubulin genes of Trichoderma harzianum were cloned followed genomic walking procedure. The tubulins showed high degree of amino acid homology with other fungal tubulins and were homologous with each other with 32 to 38% amino acid identity. Three measures for the degree of codon usage bias indicated the presence of bias in all the sequences, suggesting high expression levels in all the genes. Protein structures were modeled to provide the basis for understanding the tubulin's properties and its interactions with microtubule-associated proteins. Potential motifs were also postulated.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Trichoderma harzianum; Tubulin; Codon usage bias; Motif.
Ano: 2010 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132010000400009
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