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Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species Inra
Chantret, N.; Salse, J.; Sabot, F.; Bellec, A.; Laubin, B.; Dubois, I.; Dossat, C.; Sourdille, P.; Joudrier, P.; Gautier, M.F.; Cattolico, L.; Beckert, M.; Aubourg, S.; Weissenbach, J.; Caboche, M.; Leroy, P.; Bernard, M.; Chalhoub, B..
We study here the evolution of genes located in the same physical locus using the recently sequenced Ha locus in seven wheat genomes in diploid, tetraploid, and hexaploid species and compared them with barley and rice orthologous regions. We investigated both the conservation of microcolinearity and the molecular evolution of genes, including coding and noncoding sequences. Microcolinearity is restricted to two groups of genes (Unknown gene-2, VAMP, BGGP, Gsp-1, and Unknown gene-8 surrounded by several copies of ATPase), almost conserved in rice and barley, but in a different relative position. Highly conserved genes between wheat and rice run along with genes harboring different copy numbers and highly variable sequences between close wheat genomes. The...
Tipo: Journal Article Palavras-chave:  .
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2009d515ea76&uri=/notices/prodinra1/2009/03/
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Genome-wide analysis of the rice and arabidopsis non-specific lipid transfer protein (nsLtp) gene families and identification of wheat nsLtp genes by EST data mining Inra
Boutrot, F.; Chantret, N.; Gautier, M.F..
Plant non-specific lipid transfer proteins (nsLTPs) are encoded by multigene families and possess physiological functions that remain unclear. Our objective was to characterize the complete nsLtp gene family in rice and arabidopsis and to perform wheat EST database mining for nsLtp gene discovery.b ResultsIn this study, we carried out a genome-wide analysis of nsLtp gene families in Oryza sativa and Arabidopsis thaliana and identified 52 rice nsLtp genes and 49 arabidopsis nsLtp genes. Here we present a complete overview of the genes and deduced protein features. Tandem duplication repeats, which represent 26 out of the 52 rice nsLtp genes and 18 out of the 49 arabidopsis nsLtp genes identified, support the complexity of the nsLtp gene families in these...
Tipo: Journal Article Palavras-chave: PROTEINE DE TRANSFERT DES LIPIDES.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD200921253611&uri=/notices/prodinra1/2009/03/
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Molecular basis of evolutionary events that shaped the Hardness (Ha) locus in diploid and polyploid wheat species (Triticum and Aegilops) Inra
Chantret, N.; Salse, J.; Sabot, F.; Rahman, S.; Bellec, A.; Laubin, B.; Dubois, I.; Dossat, C.; Sourdille, P.; Joudrier, P.; Gautier, M.F.; Cattolico, L.; Beckert, M.; Aubourg, S.; Wessenbach, J.; Caboche, M.; Bernard, M.; Leroy, P.; Chalhoub, B..
The Hardness (Ha) locus controls grain hardness in hexaploid wheat (Triticum aestivum) and its relatives (Triticum and Aegilops species) and represents a classical example of a trait whose variation arose from gene loss after polyploidization. In this study, we investigated the molecular basis of the evolutionary events observed at this locus by comparing corresponding sequences of diploid, tertraploid, and hexaploid wheat species (Triticum and Aegilops). Genomic rearrangements, such as transposable element insertions, genomic deletions, duplications, and inversions, were shown to constitute the major differences when the same genomes (i.e., the A, B, or D genomes) were compared between species of different ploidy levels. The comparative analysis allowed...
Tipo: Journal Article Palavras-chave: GRAIN HARDNESS; GENOME EVOLUTION; DNA RECOMBINATION; WHEAT SPECIES.
Ano: 2005 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20088be18103&uri=/notices/prodinra1/2009/03/
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