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| Registros recuperados: 44 | |
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| Woillez, Mathieu; Fablet, Ronan; Tran-thanh Ngo,; Lalire, Maxime; Lazure, Pascal; De Pontual, Helene. |
| Numerous methods have been developed to geolocate fish from data storage tags. Whereas demersal species have been tracked using tide-driven geolocation models, pelagic species which undertake extensive migrations have been mainly tracked using light-based models. Here, we present a new HMM-based model that infers pelagic fish positions from the sole use of high-resolution temperature and depth histories. A key contribution of our framework lies in model parameter inference (diffusion coefficient and noise parameters with respect to the reference geophysical fields—satellite SST and temperatures derived from the MARS3D hydrodynamic model), which improves model robustness. As a case study, we consider long time series of data storage tags (DSTs) deployed on... |
| Tipo: Text |
Palavras-chave: Fish movement; Archival tagging; Migration; Population structure; Hidden Markov Model (HMM); State-space model. |
| Ano: 2016 |
URL: http://archimer.ifremer.fr/doc/00300/41097/40270.pdf |
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| Carbini, Sebastien; Chessel, Anatole; Benzinou, Abdesslam; Fablet, Ronan; Mahe, Kelig; De Pontual, Helene. |
| Most of European fish stocks are assessed using age-based models, and otolith interpretation for age estimations costs several million euros annually. In this context, automated ageing systems would provide a mean to 1) standardize ageing, 2) control ageing consistency within and between ageing laboratories 3) build interpreted image data bases ensuring the information conservation and sharing and 4) improve growth studies while reducing the cost of the acquisition of age data. This paper presents a review of different image-based tools for automatic fish ageing from otolith features within the framework of AFISA (EU STREP project on Automated FISh Ageing coordinated by Ifremer). The full automatic ageing process can be divided into three main steps: 1)... |
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| Ano: 2008 |
URL: http://archimer.ifremer.fr/doc/00024/13519/10546.pdf |
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| Abdalla, Saleh; Abdeh Kolahchi, Abdolnabi; Adusumilli, Susheel; Aich Bhowmick, Suchandra; Alou-font, Eva; Amarouche, Laiba; Andersen, Ole Baltazar; Antich, Helena; Aouf, Lotfi; Arbic, Brian; Armitage, Thomas; Arnault, Sabine; Artana, Camila; Aulicino, Giuseppe; Ayoub, Nadia; Badulin, Sergei; Baker, Steven; Banks, Chris; Bao, Lifeng; Barbetta, Silvia; Barceló-llull, Bàrbara; Barlier, François; Basu, Sujit; Bauer-gottwein, Peter; Becker, Matthias; Beckley, Brian; Bellefond, Nicole; Belonenko, Tatyana; Benkiran, Mounir; Benkouider, Touati; Bennartz, Ralf; Benveniste, Jérôme; Bercher, Nicolas; Berge-nguyen, Muriel; Bettencourt, Joao; Blarel, Fabien; Blazquez, Alejandro; Blumstein, Denis; Bonnefond, Pascal; Borde, Franck; Bouffard, Jérôme; Boy, François; Boy, Jean-paul; Brachet, Cédric; Brasseur, Pierre; Braun, Alexander; Brocca, Luca; Brockley, David; Brodeau, Laurent; Brown, Shannon; Bruinsma, Sean; Bulczak, Anna; Buzzard, Sammie; Cahill, Madeleine; Calmant, Stéphane; Calzas, Michel; Camici, Stefania; Cancet, Mathilde; Capdeville, Hugues; Carabajal, Claudia Cristina; Carrere, Loren; Cazenave, Anny; Chassignet, Eric P.; Chauhan, Prakash; Cherchali, Selma; Chereskin, Teresa; Cheymol, Cecile; Ciani, Daniele; Cipollini, Paolo; Cirillo, Francesca; Cosme, Emmanuel; Coss, Steve; Cotroneo, Yuri; Cotton, David; Couhert, Alexandre; Coutin-faye, Sophie; Crétaux, Jean-françois; Cyr, Frederic; D’ovidio, Francesco; Darrozes, José; David, Cedric; Dayoub, Nadim; De Staerke, Danielle; Deng, Xiaoli; Desai, Shailen; Desjonqueres, Jean-damien; Dettmering, Denise; Di Bella, Alessandro; Díaz-barroso, Lara; Dibarboure, Gerald; Dieng, Habib Boubacar; Dinardo, Salvatore; Dobslaw, Henryk; Dodet, Guillaume; Doglioli, Andrea; Domeneghetti, Alessio; Donahue, David; Dong, Shenfu; Donlon, Craig; Dorandeu, Joël; Drezen, Christine; Drinkwater, Mark; Du Penhoat, Yves; Dushaw, Brian; Egido, Alejandro; Erofeeva, Svetlana; Escudier, Philippe; Esselborn, Saskia; Exertier, Pierre; Fablet, Ronan; Falco, Cédric; Farrell, Sinead Louise; Faugere, Yannice; Femenias, Pierre; Fenoglio, Luciana; Fernandes, Joana; Fernández, Juan Gabriel; Ferrage, Pascale; Ferrari, Ramiro; Fichen, Lionel; Filippucci, Paolo; Flampouris, Stylianos; Fleury, Sara; Fornari, Marco; Forsberg, Rene; Frappart, Frédéric; Frery, Marie-laure; Garcia, Pablo; Garcia-mondejar, Albert; Gaudelli, Julia; Gaultier, Lucile; Getirana, Augusto; Gibert, Ferran; Gil, Artur; Gilbert, Lin; Gille, Sarah; Giulicchi, Luisella; Gómez-enri, Jesús; Gómez-navarro, Laura; Gommenginger, Christine; Gourdeau, Lionel; Griffin, David; Groh, Andreas; Guerin, Alexandre; Guerrero, Raul; Guinle, Thierry; Gupta, Praveen; Gutknecht, Benjamin D.; Hamon, Mathieu; Han, Guoqi; Hauser, Danièle; Helm, Veit; Hendricks, Stefan; Hernandez, Fabrice; Hogg, Anna; Horwath, Martin; Idžanović, Martina; Janssen, Peter; Jeansou, Eric; Jia, Yongjun; Jia, Yuanyuan; Jiang, Liguang; Johannessen, Johnny A.; Kamachi, Masafumi; Karimova, Svetlana; Kelly, Kathryn; Kim, Sung Yong; King, Robert; Kittel, Cecile M.m.; Klein, Patrice; Klos, Anna; Knudsen, Per; Koenig, Rolf; Kostianoy, Andrey; Kouraev, Alexei; Kumar, Raj; Labroue, Sylvie; Lago, Loreley Selene; Lambin, Juliette; Lasson, Léa; Laurain, Olivier; Laxenaire, Rémi; Lázaro, Clara; Le Gac, Sophie; Le Sommer, Julien; Le Traon, Pierre-yves; Lebedev, Sergey; Léger, Fabien; Legresy, Benoı̂t; Lemoine, Frank; Lenain, Luc; Leuliette, Eric; Levy, Marina; Lillibridge, John; Liu, Jianqiang; Llovel, William; Lyard, Florent; Macintosh, Claire; Makhoul Varona, Eduard; Manfredi, Cécile; Marin, Frédéric; Mason, Evan; Massari, Christian; Mavrocordatos, Constantin; Maximenko, Nikolai; Mcmillan, Malcolm; Medina, Thierry; Melet, Angelique; Meloni, Marco; Mertikas, Stelios; Metref, Sammy; Meyssignac, Benoit; Michaël, Ablain; Minster, Jean-françois; Moreau, Thomas; Moreira, Daniel; Morel, Yves; Morrow, Rosemary; Moyard, John; Mulet, Sandrine; Naeije, Marc; Nerem, Robert Steven; Ngodock, Hans; Nielsen, Karina; Nilsen, Jan Even Øie; Niño, Fernando; Nogueira Loddo, Carolina; Noûs, Camille; Obligis, Estelle; Otosaka, Inès; Otten, Michiel; Oztunali Ozbahceci, Berguzar; P. Raj, Roshin; Paiva, Rodrigo; Paniagua, Guillermina; Paolo, Fernando; Paris, Adrien; Pascual, Ananda; Passaro, Marcello; Paul, Stephan; Pavelsky, Tamlin; Pearson, Christopher; Penduff, Thierry; Peng, Fukai; Perosanz, Felix; Picot, Nicolas; Piras, Fanny; Poggiali, Valerio; Poirier, Étienne; Ponce De León, Sonia; Prants, Sergey; Prigent, Catherine; Provost, Christine; Pujol, M-isabelle; Qiu, Bo; Quilfen, Yves; Rami, Ali; Raney, R. Keith; Raynal, Matthias; Remy, Elisabeth; Rémy, Frédérique; Restano, Marco; Richardson, Annie; Richardson, Donald; Ricker, Robert; Ricko, Martina; Rinne, Eero; Rose, Stine Kildegaard; Rosmorduc, Vinca; Rudenko, Sergei; Ruiz, Simón; Ryan, Barbara J.; Salaün, Corinne; Sanchez-roman, Antonio; Sandberg Sørensen, Louise; Sandwell, David; Saraceno, Martin; Scagliola, Michele; Schaeffer, Philippe; Scharffenberg, Martin G.; Scharroo, Remko; Schiller, Andreas; Schneider, Raphael; Schwatke, Christian; Scozzari, Andrea; Ser-giacomi, Enrico; Seyler, Frederique; Shah, Rashmi; Sharma, Rashmi; Shaw, Andrew; Shepherd, Andrew; Shriver, Jay; Shum, C.k.; Simons, Wim; Simonsen, Sebatian B.; Slater, Thomas; Smith, Walter; Soares, Saulo; Sokolovskiy, Mikhail; Soudarin, Laurent; Spatar, Ciprian; Speich, Sabrina; Srinivasan, Margaret; Srokosz, Meric; Stanev, Emil; Staneva, Joanna; Steunou, Nathalie; Stroeve, Julienne; Su, Bob; Sulistioadi, Yohanes Budi; Swain, Debadatta; Sylvestre-baron, Annick; Taburet, Nicolas; Tailleux, Rémi; Takayama, Katsumi; Tapley, Byron; Tarpanelli, Angelica; Tavernier, Gilles; Testut, Laurent; Thakur, Praveen K.; Thibaut, Pierre; Thompson, Luanne; Tintoré, Joaquín; Tison, Céline; Tourain, Cédric; Tournadre, Jean; Townsend, Bill; Tran, Ngan; Trilles, Sébastien; Tsamados, Michel; Tseng, Kuo-hsin; Ubelmann, Clément; Uebbing, Bernd; Vergara, Oscar; Verron, Jacques; Vieira, Telmo; Vignudelli, Stefano; Vinogradova Shiffer, Nadya; Visser, Pieter; Vivier, Frederic; Volkov, Denis; Von Schuckmann, Karina; Vuglinskii, Valerii; Vuilleumier, Pierrik; Walter, Blake; Wang, Jida; Wang, Chao; Watson, Christopher; Wilkin, John; Willis, Josh; Wilson, Hilary; Woodworth, Philip; Yang, Kehan; Yao, Fangfang; Zaharia, Raymond; Zakharova, Elena; Zaron, Edward D.; Zhang, Yongsheng; Zhao, Zhongxiang; Zinchenko, Vadim; Zlotnicki, Victor. |
| In 2018 we celebrated 25 years of development of radar altimetry, and the progress achieved by this methodology in the fields of global and coastal oceanography, hydrology, geodesy and cryospheric sciences. Many symbolic major events have celebrated these developments, e.g., in Venice, Italy, the 15th (2006) and 20th (2012) years of progress and more recently, in 2018, in Ponta Delgada, Portugal, 25 Years of Progress in Radar Altimetry. On this latter occasion it was decided to collect contributions of scientists, engineers and managers involved in the worldwide altimetry community to depict the state of altimetry and propose recommendations for the altimetry of the future. This paper summarizes contributions and recommendations that were collected and... |
| Tipo: Text |
Palavras-chave: Satellite altimetry; Oceanography; Sea level; Coastal oceanography; Cryospheric sciences; Hydrology. |
| Ano: 2021 |
URL: https://archimer.ifremer.fr/doc/00688/79999/82978.pdf |
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| Mahe, Kelig; Parisi, Vincenc; Carbini, Sebastien; Soria, J.a.; Harbitz, A; De Pontual, Helene; Cotano, U; Songer, S; Millner, R; Lewy, P; Gudmundsson, E.f; Fablet, Ronan; Benzinou, Abdesslam. |
| Most of the fish stocks are assessed using age-based models, however age estimations using otoliths costs several million euros annually. In this context, Automatic Fish Ageing (EU Project) would provide means to standardize ageing among laboratories and build interpreted image databases ensuring the information conservation. Automation improves growth studies while reducing the cost of the acquisition of age data. The whole processing chain from the acquisition of otolith data to the actual ageing issue using pattern recognition or statistical inference has been realised for three case studies : a) Cod (Gadus morhua ; Faeroes, North Sea, North East Arctic) b) Anchovy (Engraulis encrasicolus ; Bay of Biscay) c) Plaice (Pleuronectes platessa, Eastern... |
| Tipo: Text |
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| Ano: 2009 |
URL: http://archimer.ifremer.fr/doc/00011/12270/10548.pdf |
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| Cao, Frédéric; Fablet, Ronan. |
| This paper deals with the automation of the acquisition of age and growth data from the analysis of otolith images. One of the key component of such it system is the automatic detection of the growth center, which serves as the basis for further processing (2D ring segmentation, age and growth estimation,...). To this end, we develop a new and well-founded approach combining a morphological analysis of image level sets to the a contrario, detection principle. This approach leads to a robust parameterless scheme, whose efficiency is demonstrated by an evaluation carried out for a set of several hundred of plaice otoliths. (c) 2005 Elsevier B.V. All rights reserved. |
| Tipo: Text |
Palavras-chave: Otolith imaging; A contrario detection; Mathematical morphology. |
| Ano: 2006 |
URL: http://archimer.ifremer.fr/doc/2006/publication-1223.pdf |
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| Maze, Guillaume; Mercier, Herle; Fablet, Ronan; Lenca, Philippe; Piolle, Jean-francois. |
| Les bases de données marines, alimentées par les satellites et les robots autonomes sous-marins comme les flotteurs du réseau Argo, sont de plus en plus grandes (plusieurs dizaines de gigaoctets et teraoctets) et rapidement évolutives (elles changent d’heure en heure). Cette augmentation spectaculaire de la dimension et de la complexité des données rend difficile leur exploitation avec les outils standards. Or, c’est à partir de l’analyse des données que les chercheurs pourront réaliser de nouvelles découvertes scientifiques sur la dynamique des océans, à grande et petite échelles, et les changements climatiques régionaux et globaux. L'école d’été OBIDAM14 visait à contribuer à lever ces verrous d’analyse en introduisant les méthodes de fouille de données... |
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| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00216/32710/31075.pdf |
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| Chessel, Anatole; Fablet, Ronan; Cao, Frederic. |
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Otolith are small stone growing according to an accretionary process located in fishes inner ears from which a lot can be learnt about their biology and ecology. Computer vision is one of the mean of systematic analysis of those stone. This paper describe an approach using partial differential equation and variational methods to reconstruct the morphogenesis of an otolith from an image.
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| Tipo: Text |
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| Ano: 2008 |
URL: https://archimer.ifremer.fr/doc/00479/59096/61734.pdf |
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| Heerah, Karine; Woillez, Mathieu; Fablet, Ronan; Garren, Francois; Martin, Stephane; De Pontual, Helene. |
| Background Movement pattern variations are reflective of behavioural switches, likely associated with different life history traits in response to the animals’ abiotic and biotic environment. Detecting these can provide rich information on the underlying processes driving animal movement patterns. However, extracting these signals from movement time series, requires tools that objectively extract, describe and quantify these behaviours. The inference of behavioural modes from movement patterns has been mainly addressed through hidden Markov models. Until now, the metrics implemented in these models did not allow to characterize cyclic patterns directly from the raw time series. To address these challenges, we developed an approach to i) extract new metrics... |
| Tipo: Text |
Palavras-chave: Fourier transform; Non negative matrix factorization; Classification; Animal behaviour; European sea bass; Movement ecology; Diurnal and tidal cycles; Biologging; Data storage tags. |
| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00402/51400/51974.pdf |
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| Fablet, Ronan; Viet, P.; Lguensat, R.; Chapron, Bertrand. |
| We address in this paper the reconstruction of irregurlarlysampled image time series with an emphasis on geophysical remote sensing data. We develop a data-driven approach, referred to as an analog assimilation and stated as an ensemble Kalman method. Contrary to model-driven assimilation models, we do not exploit a physically-derived dynamic prior but we build a data-driven dynamic prior from a representative dataset of the considered image dynamics. Our contribution is here to extend analog assimilation to images, which involve high-dimensional state space.We combine patch-based representations to a multiscale PCA-constrained decomposition. Numerical experiments for the interpolation of missing data in satellite-derived ocean remote sensing images... |
| Tipo: Text |
Palavras-chave: Data assimilation; Irregular sampling; Image time series; Data-driven methods; Kalman methods. |
| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00403/51440/52009.pdf |
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| Lguensat, Redouane; Viet, Phi Huynh; Sun, Miao; Chen, Ge; Fenglin, Tian; Chapron, Bertrand; Fablet, Ronan. |
| From the recent developments of data-driven methods as a means to better exploit large-scale observation, simulation and reanalysis datasets for solving inverse problems, this study addresses the improvement of the reconstruction of higher-resolution Sea Level Anomaly (SLA) fields using analog strategies. This reconstruction is stated as an analog data assimilation issue, where the analog models rely on patch-based and Empirical Orthogonal Functions (EOF)-based representations to circumvent the curse of dimensionality. We implement an Observation System Simulation Experiment (OSSE) in the South China Sea. The reported results show the relevance of the proposed framework with a significant gain in terms of Root Mean Square Error (RMSE) for scales below 100... |
| Tipo: Text |
Palavras-chave: Analog data assimilation; Sea level anomaly; Sea surface height; Interpolation; Data-driven methods. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00489/60078/63402.pdf |
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| Fablet, Ronan. |
| This document presents a synthesis of my research activities over the last 10 years initially within the Ifremer-IRD schlerochronology laboratory and the Fisheries Science and Technology department at Ifremer, and then at the Signal & Communication Department of Telecom Bretagne. My research activities were undertaken at the interface of Information Science and Technology and Oceanography. In the framework of interdisciplinary approaches, my research work addressed the development of new image and signal processing tools and methods with a view to (1) providing new representations of the obsvered scenes or processes, (2) exploiting these representations to infer or reconstruct patterns of interest for the considered thematic objectives. Three thematic... |
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| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00079/19015/16596.pdf |
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| Bertrand, Sophie; Joo, Rocio; Fablet, Ronan. |
| How organisms move and disperse is crucial to understand how population dynamics relates to the spatial heterogeneity of the environment. Random walk (RW) models are typical tools to describe movement patterns. Whether Levy or alternative RW better describes forager movements is keenly debated. We get around this issue using the Generalized Pareto Distribution (GPD). GPD includes as specific cases Normal, exponential and power law distributions, which underlie Brownian, Poisson-like and Levy walks respectively. Whereas previous studies typically confronted a limited set of candidate models, GPD lets the most likely RW model emerge from the data. We illustrate the wide applicability of the method using GPS-tracked seabird foraging movements and fishing... |
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| Ano: 2015 |
URL: https://archimer.ifremer.fr/doc/00275/38641/37160.pdf |
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| Chessel, Anatole; Cao, F; Fablet, Ronan. |
| We develop an axiomatic approach of vector field interpolation, which is useful as a feature extraction preprocessing step. Two operators will be singled out: the curvature operator, appearing in the total variation minimisation for image restoration and inpainting/disocclusion, and the Absolutely Minimizing Lipschitz Extension (AMLE), already known as a robust and coherent scalar image interpolation technique if we relax slightly the axioms. Numerical results, using a multiresolution scheme, show that they produce fields in accordance with the human perception of edges. |
| Tipo: Text |
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| Ano: 2006 |
URL: http://archimer.ifremer.fr/doc/00065/17647/15182.pdf |
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| Registros recuperados: 44 | |
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