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| Registros recuperados: 51 | |
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| CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P.; SILVA, F. R. da; GIACHETTO, P. F.; KUSER-FALCÃO, P. R. K.; SILVA, L. O. C. da; EGITO, A. A. do; SIQUEIRA, F.; SILVA, N. M. A. da; PAIVA, S. R.; YAMAGISHI, M. E. B.; CAETANO, A. R.. |
| Zebu cattle breeds (Bos indicus) are widely used for milk and beef production in the tropics and show natural adaptations to biotic and abiotic stresses especially found in these regions. Advanced genomic tools will be essential to help unveil and explore the underlying genetic variations that distinguish taurine and indicine cattle and, at the same time, will facilitate the work of breeders striding towards incorporating genomic tools into breeding programs aiming to improve productivity and beef and milk quality. |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Bioinformática; Gado de corte; Zebu; Cattle; Bioinformatics. |
| Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1006398 |
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| LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R.. |
| The Tambaqui (Colossoma macropomum) is a freshwater fish species naturally found in the Amazon river basin which has historically been widely exploited by community and commercial fishing. Recent efforts to domesticate, breed and raise the species in aquaculture systems has led to significant increases in production (>10-fold) over the last ten years. Current production is above 120,000 metric tons per year with a strong growth trend, making it the most important native aquaculture species in Brazil. Data for generating the draft assembly were produced from shotgun libraries with two different insert sizes and mate-paired libraries with four different sizes sequenced (2x150bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered... |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Sequência genômica.; Tambaqui; Colossoma Macropomum.; Genome assembly; Sequence analysis.. |
| Ano: 2015 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1013201 |
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| CAETANO, A. R.; ALVES, A. L.; VARELA, E. S.; VILLELA, L. C. V.; SILVA, N. M. A. da; LOBO, F. P.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; HIGA, R. H.; PAIVA, S. R.. |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Análise genômica; Marcadores SNP; Peixes nativos.; Aquicultura.; Aquaculture; Fish; Genomics; Single nucleotide polymorphism. |
| Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1003702 |
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| CAETANO, A. R.; ALVES, A. L.; VARELA, E. S.; VILLELA, L. C. V.; SILVA, N. M. A. da; LOBO, F. P.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; HIGA, R. H.; PAIVA, S. R.. |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Análise genômica; Marcadores SNP; Peixes nativos.; Aquicultura.. |
| Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1000716 |
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| AGUIRRE, A. de A. R.; LOBO, F. P.; ANDREOTTI, R.. |
| Tick infestation may cause several problems including affecting domestic animal health and reducing the production of meat and milk, among others. Resistance to several classes of acaricides have been reported, forcing researchers to search for alternative measures, such as vaccines against ticks, to ensure tick control while having no or at least low negative impacts on the environment and public health. However, the current commercially available vaccines in different strains of Rhipicephalus microplus are reported to be of low efficacy. Fortunately, reverse vaccinology approaches have shown positive results in the new generation of vaccines. On this basis, a synthetic peptide from the ATAQ protein, which is present in the gut and Malpighi tubes of R.... |
| Tipo: Artigo de periódico |
Palavras-chave: Reverse vaccinology; ATAQ; Synthetic peptide.; Immunization; Rhipicephalus microplus; Rhipicephalus sanguineus.. |
| Ano: 2016 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1041997 |
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| HONGO, J. A.; ZERLOTINI NETO, A.; LOBO, F. P.. |
| A relação ecológica de parasitismo é uma constante corrida armamentista entre os organismos parasitas e seus hospedeiros. A infecção por parasitas diminui a aptidão evolutiva dos hospedeiros e, conseqüentemente, mecanismos anti-parasitismo são positivamente selecionados continuamente dentre o conjunto de genes que compõem o genoma do organismo hospedeiro. Entretanto, a seleção positiva de mecanismos anti-parasitismo por parte dos hospedeiros impõe novas pressões seletivas aos organismos parasitas. Dessa maneira, genes de parasitas que permitam o escape dos mecanismos anti-parasitismo do hospedeiro aumentam a aptidão evolutiva do organismo parasita, sendo também selecionados positivamente. Esse fenômeno acaba por causar uma espiral de eventos coevolutivos... |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Bioinformática; Genômica; Software.; Bioinformatics; Genomics.. |
| Ano: 2012 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/933206 |
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| ZERLOTINI NETO, A.; STAFUZZA, N. B.; LOBO, F. P.; YAMAGISHI, M. E. B.; CHUD, T. C. S.; CAETANO, A. R.; MUNARI, D. P.; GARRICK, D. J.; MACHADO, M. A.; MARTINS, M. F.; CARVALHO, M. R.; SILVA, M. V. G. B.. |
| Guzerat is a dual-purpose breed recognized for important traits to its adaptation to adverse tropical environments such as resistance to parasites, heat tolerance and ability to intake forage with low nutritional value. Once genetic variation responsible for this traits has so far not been well characterized, the aim of this study was to identity single nucleotide variants (SNVs) and insertion/deletions (Indels) in Guzerat cattle breed from whole genome re-sequencing in order to characterize loss-of-function variants which could be associated with complex traits in this cattle breed. |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Bioinformática; Single nucleotide variants; Bioinformatics; Cattle. |
| Ano: 2016 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1067540 |
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| LOBO, F. P.; GONÇALVES, D. L.; ALVES JÚNIOR, S. L.; GERBER, A. L.; VASCONCELOS, A. T. R. de; BASSO, L. C.; FRANCO, G. R.; SOARES, M. A.; CADETE, R. M.; ROSA, C. A.; STAMBUK, B. U.. |
| The draft genome sequence of the yeast Spathaspora arborariae UFMG-HM19.1AT (CBS 11463 = NRRL Y-48658) is presented here. The sequenced genome size is 12.7 Mb, consisting of 41 scaffolds containing a total of 5,625 predicted open reading frames, including many genes encoding enzymes and transporters involved in D-xylose fermentation. |
| Tipo: Artigo de periódico |
Palavras-chave: Sequência genômica; Genome. |
| Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1008143 |
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| LIMA, R. S.; LOBO, F. P.; CARAZZOLLE, M. F.; COSTA, G. G. L.; RODRIGUES, E. L. de C.; ALVES, A. A.; YAMAGISHI, M. E. B.; SOUZA JUNIOR, M. T.; FORMIGHIERI, E. F.. |
| In that scenario, Embrapa Agroenergy is making efforts to improve bioenergy generation and accelerate selection of superior genotypes, through NGS and large-scale genotyping technologies. Some colleagues have already estimated of Elaeis species genome size using flow cytometry, and in parallel, we sequenced one lane of Illumina HiSeq 2000 for three E. oleifera and one E. guineensis accessions, for initial comparison. |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Genoma de palmeira; Óleo de palma.; Elaeis Guineensis.; Palm oils; Genomics. |
| Ano: 2012 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/946637 |
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| CINTRA, L. C.; ZERLOTINI, A.; SILVA, F. R. da; LOBO, F. P.; YAMAGISHI, M. E. B.; KUSER-FALCÃO, P. R. K.; GIACHETTO, P. F.. |
| Recently Brazilian Agricultural Research Corporation (Embrapa) implemented the Embrapa Bioinformatic Multi-user Laboratory(LMB) that provides a central point of convergency for related bioinformatics issues in the organization, a high performance computing (HPC) infrastructure to be used by employees and partners on solution of computational intensive problems in bioinformatics, and principally, provides specialized collaborators to realize training, assist the elaboration of projects with bioinformatics components and in specific cases contribute to execute them. The importance of LMB is best understood when one takes into account the way Embrapa research centers are geographically located. The research centers are distributed among the several regions of... |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Bioinformática; Laboratório Multiusuário de Bioinformática.; Bioinformatics. |
| Ano: 2013 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/974773 |
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| KUSER-FALCÃO, P. R.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; SILVA, F. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI, A.; HIGA, R.; VIEIRA, F.. |
| The Bioinformatics Multi-Users Laboratory of Embrapa provides an array of shared research resources and infra-structure to the Embrapa community and research collaborators The primary mission of the LMB is to address the increasing need of Embrapa investigators for support and solutions in Bioinformatics in a collaborative environment. To fulfill this mission, the LMB collaborates on research projects that require expertise in genome assembly, meta-genomics analysis to unravel candidate genes, molecular markers, differential gene expression, and structural bioinformatics, and assists in the implementation of computational solutions . |
| Tipo: Anais e Proceedings de eventos |
Palavras-chave: Pesquisa e desenvolvimento; Bioinformática; Research and development; Bioinformatics. |
| Ano: 2012 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/946438 |
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| Registros recuperados: 51 | |
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