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| Bird, Christopher S.; Verissimo, Ana; Magozzi, Sarah; Abrantes, Katya G.; Aguilar, Alex; Al-reasi, Hassan; Barnett, Adam; Bethea, Dana M.; Biais, Gerard; Borrell, Asuncion; Bouchoucha, Marc; Boyle, Mariah; Brooks, Edward J.; Brunnschweiler, Juerg; Bustamante, Paco; Carlisle, Aaron; Catarino, Diana; Caut, Stephane; Cherel, Yves; Chouvelon, Tiphaine; Churchill, Diana; Ciancio, Javier; Claes, Julien; Colaco, Ana; Courtney, Dean L.; Cresson, Pierre; Daly, Ryan; De Necker, Leigh; Endo, Tetsuya; Figueiredo, Ivone; Frisch, Ashley J.; Hansen, Joan Holst; Heithaus, Michael; Hussey, Nigel E.; Iitembu, Johannes; Juanes, Francis; Kinney, Michael J.; Kiszka, Jeremy J.; Klarian, Sebastian A.; Kopp, Dorothee; Leaf, Robert; Li, Yunkai; Lorrain, Anne; Madigan, Daniel J.; Maljkovic, Aleksandra; Malpica-cruz, Luis; Matich, Philip; Meekan, Mark G.; Menard, Frederic; Menezes, Gui M.; Munroe, Samantha E. M.; Newman, Michael C.; Papastamatiou, Yannis P.; Pethybridge, Heidi; Plumlee, Jeffrey D.; Polo-silva, Carlos; Quaeck-davies, Katie; Raoult, Vincent; Reum, Jonathan; Torres-rojas, Yassir Eden; Shiffman, David S.; Shipley, Oliver N.; Speed, Conrad W.; Staudinger, Michelle D.; Teffer, Amy K.; Tilley, Alexander; Valls, Maria; Vaudo, Jeremy J.; Wai, Tak-cheung; Wells, R. J. David; Wyatt, Alex S. J.; Yool, Andrew; Trueman, Clive N.. |
| Sharks are a diverse group of mobile predators that forage across varied spatial scales and have the potential to influence food web dynamics. The ecological consequences of recent declines in shark biomass may extend across broader geographic ranges if shark taxa display common behavioural traits. By tracking the original site of photosynthetic fixation of carbon atoms that were ultimately assimilated into muscle tissues of 5,394 sharks from 114 species, we identify globally consistent biogeographic traits in trophic interactions between sharks found in different habitats. We show that populations of shelf-dwelling sharks derive a substantial proportion of their carbon from regional pelagic sources, but contain individuals that forage within additional... |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00420/53141/54249.pdf |
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| Pethybridge, Heidi; Weijerman, Mariska; Perrymann, Holly; Audzijonyte, Asta; Porobic, Javier; Mcgregor, Vidette; Girardin, Raphael; Bulman, Cathy; Ortega-cisneros, Kelly; Sinerchia, Matteo; Hutton, Trevor; Lozano-montes, Hector; Mori, Mao; Novaglio, Camilla; Fay, Gavin; Gorton, Rebecca; Fulton, Elizabeth. |
| Calibration of complex, process-based ecosystem models is a timely task with modellers challenged by many parameters, multiple outputs of interest and often a scarcity of empirical data. Incorrect calibration can lead to unrealistic ecological and socio-economic predictions with the modeller’s experience and available knowledge of the modelled system largely determining the success of model calibration. Here we provide an overview of best practices when calibrating an Atlantis marine ecosystem model, a widely adopted framework that includes the parameters and processes comprised in many different ecosystem models. We highlight the importance of understanding the model structure and data sources of the modelled system. We then focus on several model outputs... |
| Tipo: Text |
Palavras-chave: Best practices; Model diagnostics; Food web; Pedigree; Parameter estimation. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00516/62723/67160.pdf |
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| Bodin, Nathalie; Pethybridge, Heidi; Duffy, Leanne M.; Lorrain, Anne; Allain, Valerie; Logan, John M.; Ménard, Frederic; Graham, Brittany; Choy, C. Anela; Somes, Christopher J.; Olson, Robert J.; Young, Jock W.. |
| Nitrogen and carbon stable isotope data sets are commonly used to assess complex population to ecosystem responses to natural or anthropogenic changes at regional to global spatial scales, and monthly to decadal timescales. Measured in the tissues of consumers, nitrogen isotopes (δ15N) are primarily used to estimate trophic position while carbon isotopes (δ13C) describe habitat associations and feeding pathways. Models of both δ15N and δ13C values and their associated variance can be used to estimate likely dietary contributions and niche width and provide inferences about consumer movement and migration. Stable isotope data have added utility when used in combination with other empirical data sets (e.g., stomach content, movement tracking,... |
| Tipo: Text |
Palavras-chave: Baseline isotopic variability; Food web dynamics; Global Ocean; Marine top predators; Pelagic ecosystem; Scombrids; Trophic position. |
| Ano: 2021 |
URL: https://archimer.ifremer.fr/doc/00665/77750/79872.pdf |
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| Logan, J.m.; Pethybridge, Heidi; Lorrain, Anne; Somes, C.; Allain, Valerie; Bodin, Nathalie; Choy, C.a.; Duffy, L.; Goñi, N.; Graham, B.; Langlais, C.; Ménard, F.; Olson, R.; Young, J.. |
| A global dataset of carbon stable isotope (δ13C) values from yellowfin, bigeye, and albacore tuna muscle tissue (n = 4275) was used to develop a novel tool to infer broad-scale movement and residency patterns of these highly mobile marine predators. This tool was coupled with environmental models and lipid content (C:N ratio) of tuna muscle tissues to examine ocean warming impacts on tuna ecology and bioenergetic condition across Longhurst provinces. Over a 16-year study period (2000–2015), latitudinal gradients in tuna δ13C values were consistent, with values decreasing with increasing latitude. Tuna δ13C values, reflecting modelled global phytoplankton δ13C landscapes (“isoscapes”), were largely related to spatial changes in oxygen concentrations at... |
| Tipo: Text |
Palavras-chave: Albacore tuna; Bigeye tuna; Yellowfin tuna; Carbon isotope analysis; Movement indicators; Global ocean; Fisheries management. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00617/72943/71964.pdf |
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| Pethybridge, Heidi; Roos, David; Loizeau, Veronique; Pecquerie, Laure; Bacher, Cedric. |
| A size-structured, bioenergetics model was implemented to examine the effects of short-term environmental changes on European anchovy, Engraulis encrasicolus, in the North-western Mediterranean Sea. The model approach was based on Dynamic Energy Budget (DEB) theory and details the acquisition and allocation of energy (J d(-1)) during an organisms' full life-cycle. Model calibration was achieved using biometric data collected from the Gulf of Lions between 2002 and 2011. Bioenergetics simulations successfully captured ontogenetic and seasonal growth patterns, including active growth in spring/summer, loss of mass in autumn/winter and the timing and amplitude of multi-batch spawning events. Scenario analysis determined that vital rates (growth and fecundity)... |
| Tipo: Text |
Palavras-chave: Engraulis encrasicolus; NW Mediterranean Sea; Environmental variability; Dynamic Energy Budget theory; Growth; Fecundity. |
| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00127/23822/22490.pdf |
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| Dhurmeea, Zahirah; Pethybridge, Heidi; Langlais, Clothilde; Somes, Christopher J.; Nikolic, Natacha; Bourjea, Jerome; Appadoo, Chandani; Bodin, Nathalie. |
| Albacore tuna (Thunnus alalunga) is a highly economically important species in the western Indian Ocean. However, knowledge of its ecological and nutritional characteristics, essential for proper management of the species, is lacking in the region. The trophodynamics of the Indian Ocean albacore was thus examined using known fatty acid trophic markers (FATMs) of primary producers, nutritional condition indices (NCIs) (omega-3/omega-6 ratio and total fatty acid content (TFA)), and baseline and lipid corrected stable isotope of carbon (δ13Ccorr) and nitrogen (δ15Ncorr), measured in the muscle tissue. We applied generalized additive mixed models to understand the spatiotemporal patterns and drivers of these tracers, taking into consideration several intrinsic... |
| Tipo: Text |
Palavras-chave: Trophodynamics; Phytoplankton; Environmental parameters; Climate change. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00623/73497/72787.pdf |
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