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| Registros recuperados: 12 | |
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| Petitgas, Pierre; Renard, Didier; Desassis, Nicolas; Huret, Martin; Romagnan, Jean-baptiste; Doray, Mathieu; Woillez, Mathieu; Rivoirard, Jacques. |
| This paper presents a novel application of the geostatistical multivariate method known as min–max autocorrelation factors (MAFs) for analysing fisheries survey data in a space–time context. The method was used to map essential fish habitats and evaluate the variability in time of their occupancy. Research surveys at sea on marine fish stocks have been undertaken for several decades now. The data are time series of yearly maps of fish density, making it possible to analyse the space–time variability in fish spatial distributions. Space–time models are key to addressing conservation issues requiring the characterization of variability in habitat maps over time. Here, the variability in fisheries survey data series is decomposed in space and time to address... |
| Tipo: Text |
Palavras-chave: MAF; Space-time; Habitat; Mapping; Sardine; Bay of Biscay. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00599/71157/69915.pdf |
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| Blanluet, Arthur; Doray, Mathieu; Berger, Laurent; Romagnan, Jean-baptiste; Le Bouffant, Naig; Lehuta, Sigrid; Petitgas, Pierre. |
| Sound scattering layers (SSLs) are observed over a broad range of spatio-temporal scales and geographical areas. SSLs represent a large biomass, likely involved in the biological carbon pump and the structure of marine trophic webs. Yet, the taxonomic composition remains largely unknown for many SSLs. To investigate the challenges of SSL sampling, we performed a survey in a small study area in the Northern Bay of Biscay (France) by combining broadband and narrowband acoustics, net sampling, imagery and video recordings. In order to identify organisms contributing to the observed SSLs, we compared measured frequency spectra to forward predicted spectra derived from biological data. Furthermore, to assess the confidence in SSL characterization, we evaluated... |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00588/70035/67955.pdf |
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| Caputi, Luigi; Carradec, Quentin; Eveillard, Damien; Kirilovsky, Amos; Pelletier, Eric; Karlusich, Juan J. Pierella; Vieira, Fabio Rocha Jimenez; Villar, Emilie; Chaffron, Samuel; Malviya, Shruti; Scalco, Eleonora; Acinas, Silvia G.; Alberti, Adriana; Aury, Jean-marc; Benoiston, Anne-sophie; Bertrand, Arnaud; Biard, Tristan; Bittner, Lucie; Boccara, Martine; Brum, Jennifer R.; Brunet, Cedric; Busseni, Greta; Carratala, Anna; Claustre, Herve; Coelho, Luis Pedro; Colin, Sbastien; D'Aniello, Salvatore; Da Silva, Corinne; Del Core, Marianna; Dore, Hugo; Gasparini, Stephane; Kokoszka, Florian; Jamet, Jean-louis; Lejeusne, Christophe; Lepoivre, Cyrille; Lescot, Magali; Lima-mendez, Gipsi; Lombard, Fabien; Lukes, Julius; Maillet, Nicolas; Madoui, Mohammed-amin; Martinez, Elodie; Mazzocchi, Maria Grazia; Neou, Mario B.; Paz-yepes, Javier; Poulain, Julie; Ramondenc, Simon; Romagnan, Jean-baptiste; Roux, Simon; Manta, Daniela Salvagio; Sanges, Remo; Speich, Sabrina; Sprovieri, Mario; Sunagawa, Shinichi; Taillandier, Vincent; Tanaka, Atsuko; Tirichine, Leila; Trottier, Camille; Uitz, Julia; Veluchamy, Alaguraj; Vesela, Jana; Vincent, Flora; Yau, Sheree; Kandels-lewis, Stefanie; Searson, Sarah; Dimier, Cline; Picheral, Marc; Bork, Peer; Boss, Emmanuel; De Vargas, Colomban; Follows, Michael J.; Grimsley, Nigel; Guidi, Lionel; Hingamp, Pascal; Karsenti, Eric; Sordino, Paolo; Stemmann, Lars; Sullivan, Matthew B.; Tagliabue, Alessandro; Zingone, Adriana; Garczarek, Laurence; D'Ortenzio, Fabrizio; Testor, Pierre; Not, Fabrice; D'Alcala, Maurizio Ribera; Wincker, Patrick; Bowler, Chris; Iudicone, Daniele; Gorsky, Gabriel; Jaillon, Olivier; Karp-boss, Lee; Krzic, Uros; Ogata, Hiroyuki; Pesant, Stephane; Raes, Jeroen; Reynaud, Emmanuel G.; Sardet, Christian; Sieracki, Mike; Velayoudon, Didier; Weissenbach, Jean. |
| Predicting responses of plankton to variations in essential nutrients is hampered by limited in situ measurements, a poor understanding of community composition, and the lack of reference gene catalogs for key taxa. Iron is a key driver of plankton dynamics and, therefore, of global biogeochemical cycles and climate. To assess the impact of iron availability on plankton communities we explored the comprehensive bio‐oceanographic and ‐omics datasets from Tara Oceans in the context of the iron products from two state‐of‐the‐art global scale biogeochemical models. We obtained novel information about adaptation and acclimation towards iron in a range of phytoplankton, including picocyanobacteria and diatoms, and identified whole sub‐communities co‐varying with... |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00475/58680/61184.pdf |
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| Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jérôme; Berger, Laurent; Dorémus, Ghislain; Bourriau, Paul; Grellier, Patrick; Massé, Jacques; Sanchez, Florence. |
| The initial objective of the PELGAS integrated survey was to assess the biomass of small pelagic fish in the Bay of Biscay in spring. Sampling has been extended to study the spatial structure and dynamics of the pelagic ecosystem in springtime. The PELGAS survey has produced since 2000 long-term time-series of spatially-explicit data and indices, describing the main pelagic ecosystem components: hydrology, phytoplankton, mesozooplankton, fish and megafauna. In addition to small pelagic fish biomass estimates used for fish stock assessment, the survey now delivers two types of ecosystem products: standard gridded maps of ecosystem parameters, and a time series dataset of indicators of the Bay of Biscay pelagic ecosystem state. The evolution of the PELGAS... |
| Tipo: Text |
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| Ano: 2018 |
URL: http://archimer.ifremer.fr/doc/00457/56844/58693.pdf |
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| Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jérôme; Authier, Matthieu; Berger, Laurent; Doremus, Ghislain; Bourriau, Paul; Grellier, Patrick; Masse, Jacques; Sanchez, Florence. |
| The initial focus of the PELGAS integrated survey was to assess the small pelagic fish biomass in the Bay of Biscay in springtime, for fisheries management purposes. Sampling has been extended to produce long-term time-series of spatially-explicit data and indices, describing the main pelagic ecosystem components: hydrology, phytoplankton, mesozooplankton, fish and megafauna. A collaborative analysis of these datasets has brought new insights on the Bay of Biscay pelagic ecosystem summarized here. New results on single ecosystem components include an analysis of water samples to groundtruth the results of an ocean color algorithm aiming at detecting phytoplanktonic coccolithophores. New insights on mesozooplankton spatio-temporal distribution and energy... |
| Tipo: Text |
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| Ano: 2018 |
URL: http://archimer.ifremer.fr/doc/00445/55665/57331.pdf |
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| Lomnard, Fabien; Boss, Emmanuel; Waite, Anya M.; Vogt, Meike; Uitz, Julia; Stemman, Lars; Sosik, Heidi M.; Schulz, Jan; Romagnan, Jean-baptiste; Picheral, Marc; Pearlman, Jay; Ohman, Mark D; Niehoff, Barbara; Möller, Klas O; Miloslavich, Patricia; Lara-lpez, Ana; Kudela, Raphael; Lopes, Ribens M; Kiko, Rainer; Karp-boss, Lee; Jaffe, Jules S; Iversen, Morten H; Irisson, Jean-olivier; Fennel, Katja; Hauss, Helena; Guidi, Lionel; Gorsky, Gaby; Giering, Sarah L.c.; Gaube, Peter; Gallager, Scott; Dubelaar, George; Cowen, Robert K; Carlotti, François; Briseno-avena, Christian; Berline, Léo; Benoit-bird, Kelly; Bax, Nicholas; Batten, Sonia; Ayata, Sakina Dorothée; Artigas, Luis Felipe; Appeltans, Ward. |
| In this paper we review the technologies available to make globally quantitative observations of particles in general—and plankton in particular—in the world oceans, and for sizes varying from sub-microns to centimeters. Some of these technologies have been available for years while others have only recently emerged. Use of these technologies is critical to improve understanding of the processes that control abundances, distributions and composition of plankton, provide data necessary to constrain and improve ecosystem and biogeochemical models, and forecast changes in marine ecosystems in light of climate change. In this paper we begin by providing the motivation for plankton observations, quantification and diversity qualification on a global scale. We... |
| Tipo: Text |
Palavras-chave: Plankton; Imaging; OceanObs; Autonomous platforms; Global observing; EOVs; ECVs. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00490/60217/63585.pdf |
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| Romagnan, Jean-baptiste; Aldamman, Lama; Gasparini, Stephane; Nival, Paul; Aubert, Anais; Jamet, Jean Louis; Stemmann, Lars. |
| The present work aims to show that high throughput imaging systems can be useful to estimate mesozooplankton community size and taxonomic descriptors that can be the base for consistent large scale monitoring of plankton communities. Such monitoring is required by the European Marine Strategy Framework Directive (MSFD) in order to ensure the Good Environmental Status (GES) of European coastal and offshore marine ecosystems. Time and cost-effective, automatic, techniques are of high interest in this context. An imaging-based protocol has been applied to a high frequency time series (every second day between April 2003 to April 2004 on average) of zooplankton obtained in a coastal site of the NW Mediterranean Sea, Villefranche Bay. One hundred eighty four... |
| Tipo: Text |
Palavras-chave: Mesozooplankton; Copepod; Size distributions; High frequency; Automatic classification; Zooscan; MSFD. |
| Ano: 2016 |
URL: http://archimer.ifremer.fr/doc/00323/43464/42867.pdf |
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| Doray, Mathieu; Petitgas, Pierre; Huret, Martin; Duhamel, Erwan; Romagnan, Jean-baptiste; Authier, Matthieu; Dupuy, Christine; Spitz, Jerome. |
| This paper is a practical contribution to two important debates raised by the implementation of marine ecosystem based management: (i) which ecosystem data can be provided by a fisheries survey optimised for ecosystem monitoring; and (ii) how to combine/select potential indicators to derive useful information on marine ecosystem status and dynamics? A suite of 143 potential indicators, including spatial indices, representing small pelagic fish and their biotic and abiotic environments are presented. Indicators were routinely derived from the PELGAS integrated ecosystem survey conducted in spring in the Bay of Biscay (BoB). The general patterns over time in this suite of 5–16 years, non-stationary time series are characterised using a methodology based on... |
| Tipo: Text |
Palavras-chave: Min/max autocorrelation factors; Time correlation; Survey-based indicators; Marine Strategy Framework Directive; Ecosystem variability; Bay of Biscay; Pelagic ecosystem. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00414/52552/53443.pdf |
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| Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jerome; Authier, Matthieu; Sanchez, Florence; Berger, Laurent; Doremus, Ghislain; Bourriau, Paul; Grellier, Patrick; Masse, Jacques. |
| The Pélagiques Gascogne (PELGAS) integrated survey has been developed by a multidisciplinary team of Ifremer and La Rochelle University scientists since 2000, joined by commercial fishermen in 2007. Its initial focus was to assess the biomass and predict the recruitment success of anchovy in the Bay of Biscay in spring. Taking advantage of the space and versatility of R/V Thalassa II, sampling has been progressively extended to other ecosystem components. PELGAS therefore further developed the second objective of monitoring and studying the dynamic and diverse Biscay pelagic ecosystem in springtime. The PELGAS survey model has allowed for the establishment of a long-term time-series of spatially-explicit data of the Bay of Biscay pelagic ecosystem since... |
| Tipo: Text |
Palavras-chave: Pelagic ecosystem; Integrated ecosystem monitoring survey; Marine Strategy Framework Directive; Ecosystem variability; Bay of Biscay; Fishing vessels. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00407/51801/52401.pdf |
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| Colas, Florent; Tardivel, Morgan; Perchoc, Jonathan; Lunven, Michel; Forest, Bertrand; Guyader, Gerard; Danielou, Marie-madeleine; Le Mestre, Sophie; Bourriau, Paul; Antajan, Elvire; Sourisseau, Marc; Huret, Martin; Petitgas, Pierre; Romagnan, Jean-baptiste. |
| In this paper we present the ZooCAM, a system designed to digitize and analyse on board large volume samples of preserved and living metazooplankton (i.e. multicellular zooplankton) and fish eggs > 300 µm ESD. The ZooCAM has been specifically designed to overcome the difficulties to analyse zooplankton and fish eggs in the framework of the PELGAS survey, and provide high frequency data. The ZooCAM fish eggs counts were comparable to those done with a dissecting microscope. The ZooCAM enabled the accurate prediction and fast on board validation of staged anchovy and sardine eggs in almost real time after collection. A comparison with the ZooScan, on a more complex zooplanktonic community, provided encouraging results on the agreement between the 2... |
| Tipo: Text |
Palavras-chave: ZooCAM; In-flow imaging; Fish eggs; Zooplankton; Ecosystemic survey. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00407/51833/52432.pdf |
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| Trenkel, Verena; Vaz, Sandrine; Albouy, Camille; Brind'Amour, Anik; Duhamel, Erwan; Laffargue, Pascal; Romagnan, Jean-baptiste; Simon, Julien; Lorance, Pascal. |
| The negative impacts that scientific monitoring may have on marine ecosystems has been a neglected topic, mainly on the basis that its magnitude is minor compared to commercial fisheries, even though this raises ethical and, in certain cases, conservation issues. We argue that ethical principles should lead us to reconsider marine wildlife resource monitoring such as the fish and shellfish trawl surveys providing the science-based evidence needed for fisheries management and assessment of how environmental change impacts marine shelf communities worldwide. Recent scientific and technological progress has provided methods and tools which might now be harnessed to reduce the impact of marine monitoring. We review these alternative methods, consider... |
| Tipo: Text |
Palavras-chave: Monitoring ethics; Marine surveying; Impacts of bottom trawling; Genetic methods; Ecosystem-based management. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00470/58161/60665.pdf |
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| Registros recuperados: 12 | |
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