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Registros recuperados: 16 | |
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NEVES, H. H.; CARVALHEIRO, R.; O'BRIEN, A. M.; UTSUNOMIYA, Y. T.; CARMO, A. S. do; SCHENKEL, F. S.; SÖLKNER, J.; MCEWAN, J. C.; VAN TASSELL, C. P.; COLE, J. B.; SILVA, M. V. G. B.; QUEIROZ, S. A.; SONSTEGARD, T. S.; GARCIA, J. F.. |
Article n. 17. |
Tipo: Artigo de periódico |
Palavras-chave: Nellore cattle; Genomic selection. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/987574 |
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PICCOLI, M. L.; BRACINNI NETO, J.; CARDOSO, F. F.; SARGOLZAEI, M.; SCHENKEL, F. S.. |
The main objective of this research was to test alternative low density SNP panels to impute Illumina 50K SNP panel genotypes in Braford and Hereford cattle. Genotypes from 3,768 Hereford, Braford and Nellore animals were used for testing imputation from low density SNP panels (3K, 6K, 8K, 15K and 20K) to the Illumina 50K SNP panel, under four different scenarios: including or not Nellore genotypes in the reference population in combination with the use or not of pedigree information. There were no significant differences in imputation accuracy among these four scenarios within each panel. However, significant differences between panels were found. The best accuracy was given by a customized 15K SNP panel, with an overall genotype concordance rate of... |
Tipo: Parte de livro |
Palavras-chave: Seleção genômica; Gado de corte. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/995739 |
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BUZANSKAS, M. E.; GROSSI, D. A.; REGITANO, L. C. de A.; SCHENKEL, F. S.; ALENCAR, M. M. de; MUNARI, D. P.. |
O objetivo deste trabalho foi estudar a associação entre polimorfismos de base única (SNP) com os valores genéticos do perímetro escrotal mensurado ao desmame (PED) em bovinos de corte de raça sintética. Neste estudo foram utilizados 285 animais da raça Canchim e 114 animais do grupo genético MA (utilizados na formação da raça Canchim), genotipados com o painel de alta densidade (786.799 SNPs). Após o controle de qualidade de informações (genótipos e fenótipos) restaram 672.778 SNPs e 392 animais. Foram observadas associações para PED nos cromossomos 20 e 28. Após a correção para múltiplos testes (?false discovery rate?) ao nível de 10%, 12 SNPs foram significativamente associados, ao longo do cromossomo, com PED. Novos e promissores genes associados com... |
Tipo: Separatas |
Palavras-chave: Melhoramento genético; Seleção genômica.; Gado de Corte.. |
Ano: 2013 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/964251 |
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CRUZ, V. A. R. da; SCHENKEL, F. S.; SAVEGNAGO, R. P.; GRUPIONI, N. V.; STAFUZZA, N. B.; SARGOZAEL, M.; IBELLI, A. M. G.; PEIXOTO, J. de O.; LEDUR, M. C.; MUNARI, D. P.. |
Apolipoprotein B (APOB) and Adiponectin Receptor 1 (ADIPOR1) are related to the regulation of feed intake, fat metabolism and protein deposition and are candidate genes for genomic studies in birds. In this study, associations of two single nucleotide polymorphisms (SNPs) g.102A>T (APOB) and g.729C>T (ADIPOR1) with carcass, bone integrity and performance traits in broilers were investigated. Genotyping was performed on a paternal line of 1,454 broilers. The SNP detection was carried out by PCR-RFLP technique using the restriction enzymes HhaI for the SNP g.729C>T and MslI for the SNP g.102A>T. The association analyses of the two SNPs with 85 traits were performed using the restricted maximum likelihood (REML) and Generalized Quasi-Likelihood... |
Tipo: Artigo de periódico |
Palavras-chave: Frango de corte; Carcaça; Genética animal. |
Ano: 2015 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1025860 |
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GROSSI, D. A.; GRUPIONI, N. V.; BUZANSKAS, M. E.; SCHENKEL, F. S.; REGITANO, L. C. de A.; PAZ, C. C. P.; ALENCAR, M. M. de; MUNARI, D.. |
A variance component approach for quantitative trait loci (QTL) mapping was proposed by George et al. (2000), which assumes a mixed inheritance model (polygenes and QTL effects). This approach allows for mapping QTL in general pedigrees from outbreed populations. In this method, besides the use of an additive relationship matrix to estimate the additive polygenic effects, an identical-by-descent (IBD) matrix is used to estimate the QTL effect and its variance. Analyses of the association of genetic markers with economic traits in beef cattle have been mainly reported in developed countries. In the Brazilian Canchim breed, studies found association of polymorphism in the insulin-like growth factor 1 (IGF1), growth hormone (GH) and specific pituitary... |
Tipo: Separatas |
Palavras-chave: Polymorphisms.; Crescimento; Gado de Corte; Reprodução.. |
Ano: 2010 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/862938 |
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BUZANSKAS, M. E.; GROSSI, D. do A.; VENTURA, R. V.; SCHENKEL, F. S.; CHUD, T. C. S.; STAFUZZA, N. B.; ROLA, L. D.; MEIRELLES, S. L. C.; MOKRY, F. B.; MUDADU, M. de A.; HIGA, R. H.; SILVA, M. V. G. B.; ALENCAR, M. M. de; REGITANO, L. C. de A.; MUNARI, D. P.. |
Background: Beef cattle breeding programs in Brazil have placed greater emphasis on the genomic study of reproductive traits of males and females due to their economic importance. In this study, genome-wide associations were assessed for scrotal circumference at 210 d of age, scrotal circumference at 420 d of age, age at first calving, and age at second calving, in Canchim beef cattle. Data quality control was conducted resulting in 672,778 SNPs and 392 animals. Results: Associated SNPs were observed for scrotal circumference at 420 d of age (435 SNPs), followed by scrotal circumference at 210 d of age (12 SNPs), age at first calving (six SNPs), and age at second calving (four SNPs). We investigated whether significant SNPs were within genic or surrounding... |
Tipo: Artigo de periódico |
Palavras-chave: Polimorfismo de nucleotídeo único; Gado de corte; Gado Canchim; Beef cattle; Genome-wide association study; Single nucleotide polymorphism; Quantitative trait loci. |
Ano: 2017 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1074373 |
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BUZANSKAS, M. E.; GROSSI, D. A.; VENTURA, R. V.; SCHENKEL, F. S.; SARGOLZAEI, M.; MEIRELLES, S. L. C. O; MOKRY, F. B.; HIGA, R. H.; MUDADU, M. de A.; SILVA, M. V. G. B.; NICIURA, S. C. M.; TORRES JUNIOR, R. A. de A.; ALENCAR, M. M. de; REGITANO, L. C. de A.; MUNARI, D. P.. |
Tipo: Separatas |
Palavras-chave: Genome-wide; Growth trait; Race Canchim; Raça Canchim.; Gado de corte.. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/986150 |
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BUZANSKAS, M. E.; GROSSI, D. A.; VENTURA, R. V.; SCHENKEL, F. S.; SARGOLZAEI, M.; MEIRELLES, S. L. C.; MOKRY, F. B.; HIGA, R. H.; MUDADU, M. de A.; SILVA, M. V. G. B.; NICIURA, S. C. M.; TORRES JUNIOR, R. A. de A.; ALENCAR, M. M. de; REGITANO, L. C. de A.; MUNARI, D. P.. |
Tipo: Separatas |
Palavras-chave: Genome-wide; Growth trait; Race Canchim; Raça Canchim; Gado de corte. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/984641 |
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BUZANSKAS, M. E.; GROSSI, D. A.; VENTURA, R. V.; SCHENKEL, F. S.; SARGOLZAEI, M.; MEIRELLES, S. L. C.; MOKRY, F. B.; HIGA, R. H.; MUDADU, M. A.; SILVA, M. V. G. B.; NICIURA, S. C. M.; TORRES JÚNIOR, R. A. de A.; ALENCAR, M. M.; REGITANO, L. C. A.; MUNARI, D. P.. |
Abstract. Studies are being conducted on the applicability of genomic data to improve the accuracy of the selection process in livestock, and genome-wide association studies (GWAS) provide valuable information to enhance the understanding on the genetics of complex traits. The aim of this study was to identify genomic regions and genes that play roles in birth weight (BW), weaning weight adjusted for 210 days of age (WW), and long-yearling weight adjusted for 420 days of age (LYW) in Canchim cattle. GWAS were performed by means of the Generalized Quasi-Likelihood Score (GQLS) method using genotypes from the BovineHD BeadChip and estimated breeding values for BW, WW, and LYW. Data consisted of 285 animals from the Canchim breed and 114 from the MA genetic... |
Tipo: Artigo de periódico |
Palavras-chave: Gado de corte; Beef cattle; Genome-wide association study.. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1003481 |
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BUZANSKAS, M. E.; GROSSI, D. A.; VENTURA, R. V.; CHUD, T. C. S.; URBINATI, I.; MEIRELLES, S. L. C.; MOKRY, F. B.; SCHENKEL, F. S.; REGITANO, L. C. de A.; MUNARI, D. P.. |
Genome-wide association studies provide valuable information for understanding the genetic control of complex traits in livestock. The goal of this study was to investigate the association of the BovineHD BeadChip SNP genotypes with estimated breeding values for long-yearling scrotal circumference adjusted to 420 days (SC420) in Canchim beef cattle. A total 435 SNPs were significantly associated with SC420 (10% chromosome-wise FDR), of which 30 were located in genes on chromosomes 5, 13, and 14, including HEY1, PLCG1, PAG1, ZFHX4, PEX2, FABP5, FABP12, MED30, and TRHR genes. These genes play a role in biological processes related to reproduction, fat deposition, and hormonal systems development. Future studies targeting these regions and genes could provide... |
Tipo: Separatas |
Palavras-chave: Candidate gene; Canchim breed.; Animal breeding.. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/993744 |
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UTSUNOMIYA, Y. T.; CARMO, A. S.; NEVES, H. H. R.; CARVALHEIRO, R.; MATOS, M. C.; ZAVAREZ, L. B.; ITO, P. K. R. K.; O'BRIEN, A. M. P.; SOLKNER, J.; PORTO-NETO, L. R.; SCHENKEL, F. S.; McEWAN, J.; COLE, J. B.; SILVA, M. V. G. B.; VAN TASSELL, C. P.; SONSTEGARD, T. S.; GARCIA, J. F.. |
Tipo: Separatas |
Palavras-chave: Genome-wide; Race Nellore; Nellore cattle - reproductive performance; Raça Canchim.; Gado de corte.. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/986515 |
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MOKRY, F. B.; BUZANSKAS, M. E.; MUDADU, M. de A.; GROSSI, D. do A.; HIGA, R. H.; VENTURA, R. V.; LIMA, A. O. de; SARGOLZAEI, M.; MEIRELLES, S. L. C.; SCHENKEL, F. S.; SILVA, M. V. G. B. da; NICIURA, S. C. M.; ALENCAR, M. M. de; MINARI, D. P.; REGITANO, L. C. de A.. |
Abstract. Background: The development of linkage disequilibrium (LD) maps and the characterization of haplotype block structure at the population level are useful parameters for guiding genome wide association (GWA) studies, and for understanding the nature of non-linear association between phenotypes and genes. The elucidation of haplotype block structure can reduce the information of several single nucleotide polymorphisms (SNP) into the information of a haplotype block, reducing the number of SNPs in a coherent way for consideration in GWA and genomic selection studies. Results: The maximum average LD, measured by r2 varied between 0.33 to 0.40 at a distance of < 2.5 kb, and the minimum average values of r2 varied between 0.05 to 0.07 at distances... |
Tipo: Artigo de periódico |
Palavras-chave: Polimorfismo de nucleotídeo único; Genome wide association studies; Desequilíbrio de ligação; Gado de corte; Beef cattle; Single nucleotide polymorphism; Linkage disequilibrium. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1003463 |
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MOKRY, F. B.; BUZANSKAS, M. E.; MUDADU, M. de A.; GROSSI, D. do A.; HIGA, R. H.; VENTURA, R. V.; LIMA, A. O. de; SARGOLZAEI, M.; MEIRELLES, S. L. C.; SCHENKEL, F. S.; SILVA, M. V. G. B.; NICIURA, S. C. M.; ALENCAR, M. M. de; MINARI, D. P.; REGITANO, L. C. de A.. |
Abstract. Background: The development of linkage disequilibrium (LD) maps and the characterization of haplotype block structure at the population level are useful parameters for guiding genome wide association (GWA) studies, and for understanding the nature of non-linear association between phenotypes and genes. The elucidation of haplotype block structure can reduce the information of several single nucleotide polymorphisms (SNP) into the information of a haplotype block, reducing the number of SNPs in a coherent way for consideration in GWA and genomic selection studies. Results: The maximum average LD, measured by r2 varied between 0.33 to 0.40 at a distance of < 2.5 kb, and the minimum average values of r2 varied between 0.05 to 0.07 at distances... |
Tipo: Separatas |
Palavras-chave: Composite; Desequilíbrio de ligação; Genome wide association studies; Halplotype block; Linjage disequilibirium; Polimorfismo de nucleotídeo único.; Gado de corte.; Beef cattle; Linkage disequilibrium; Single nucleotide polymorphism.. |
Ano: 2014 |
URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1006604 |
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Registros recuperados: 16 | |
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