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A semi-automated SNP-based approach for contaminant identification in biparental Polyploid Populations of tropical forage grasses. Repositório Alice
MARTINS, F. B.; SOUZA, A. P. DE; VIGNA, B. B. Z.; VALLE, C. B. do; JANK, L.; SANTOS, M. F.; BARRIOS, S. C. L.; SIMEÃO, R. M.; CHIARI, L.; FERREIRA, R. C. U.; AONO, A. H.; MORAES, A. C. L..
Artificial hybridization plays a fundamental role in plant breeding programs since it generates new genotypic combinations that can result in desirable phenotypes. Depending on the species and mode of reproduction, controlled crosses may be challenging, and contaminating individuals can be introduced accidentally. In this context, the identification of such contaminants is important to avoid compromising further selection cycles, as well as genetic and genomic studies. The main objective of this work was to propose an automated multivariate methodology for the detection and classification of putative contaminants, including apomictic clones (ACs), self-fertilized individuals, half-siblings (HSs), and full contaminants (FCs), in biparental polyploid...
Tipo: Artigo de periódico Palavras-chave: GBS; Apomictic clones; Self fertilization; Half sibling; Allele dosage; Clustering analysis; Shiny; Principal component analysis.
Ano: 2021 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1137227
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Genetic Mapping With Allele Dosage Information in Tetraploid Urochloa decumbens (Stapf) R. D. Webster Reveals Insights Into Spittlebug (Notozulia entreriana Berg) Resistance. Repositório Alice
FERREIRA, R. C. U.; LARA, L. A. de C.; CHIARI, L.; BARRIOS, S. C. L.; VALLE, C. B. do; VALERIO, J. R.; TORRES, F. Z. V.; GARCIA, A. A. F.; SOUZA, A. P. de.
Urochloa decumbens (Stapf) R. D. Webster is one of the most important African forage grasses in Brazilian beef production. Currently available genetic-genomic resources for this species are restricted mainly due to polyploidy and apomixis. Therefore, crucial genomic-molecular studies such as the construction of genetic maps and the mapping of quantitative trait loci (QTLs) are very challenging and consequently affect the advancement of molecular breeding. The objectives of this work were to (i) construct an integrated U. decumbens genetic map for a full-sibling progeny using GBS-based markers with allele dosage information, (ii) detect QTLs for spittlebug (Notozulia entreriana) resistance, and (iii) seek putative candidate genes involved in defense against...
Tipo: Artigo de periódico Palavras-chave: Allele dosage; Linkage map; Signalgrass; SNP; Brachiaria; Polyploidy; Quantitative traits.
Ano: 2019 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1106558
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