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Molecular evolution of the ent-kaurenoic acid oxidase gene in Oryzeae 74
Yang,Yanhua; Chen,Keping.
We surveyed the substitution patterns in the ent-kaurenoic acid oxidase (KAO) gene in 11 species of Oryzeae with an outgroup in the Ehrhartoidaea. The synonymous and non-synonymous substitution rates showed a high positive correlation with each other, but were negatively correlated with codon usage bias and GC content at third codon positions. The substitution rate was heterogenous among lineages. Likelihood-ratio tests showed that the non-synonymous/synonymous rate ratio changed significantly among lineages. Site-specific models provided no evidence for positive selection of particular amino acid sites in any codon of the KAO gene. This finding suggested that the significant rate heterogeneity among some lineages may have been caused by variability in the...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Codon usage bias; Ent-kaurenoic acid oxidase (KAO); Positive selection; Rate heterogeneity; Substitution rate.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000300011
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