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Characterization of ten novel Ty1/copia-like retrotransposon families of the grapevine genome Inra
Moisy, C.; Garrison, K.; Meredith, C. P.; Pelsy, F..
BACKGROUND: Retrotransposons make a significant contribution to the size, organization and genetic diversity of their host genomes. To characterize retrotransposon families in the grapevine genome (the fourth crop plant genome sequenced) we have combined two approaches: a PCR-based method for the isolation of RnaseH-LTR sequences with a computer-based sequence similarity search in the whole-genome sequence of PN40024.RESULTS: Supported by a phylogenic analysis, ten novel Ty1/copia families were distinguished in this study. To select a canonical reference element sequence from amongst the various insertions in the genome belonging to each retroelement family, the following screening criteria were adopted to identify the element sequence with: (1)...
Tipo: Journal Article Palavras-chave: RETROTRANSPOSON TY1-COPIA Ty1; RETROTRANSPOSON; COPIA-LIKE; GRAPEVINE; GENOME; PCR-BASED; RNASEH-LTR; GENETIC.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20089e1922fe&uri=/notices/prodinra1/2009/11/
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Does probabilistic modelling of linkage disequilibrium evolution improve the accuracy of QTL location in animal pedigree ? Inra
Cierco-Ayrolles, C.; Dejean, C.; Legarra, A.; Gilbert, H.; Druet, T.; Ytournel, F.; Estivals, D.; Oumouhou, N.; Mangin, B..
BACKGROUND: Since 2001, the use of more and more dense maps has made researchers aware that combining linkage and linkage disequilibrium enhances the feasibility of fine-mapping genes of interest. So, various method types have been derived to include concepts of population genetics in the analyses. One major drawback of many of these methods is their computational cost, which is very significant when many markers are considered. Recent advances in technology, such as SNP genotyping, have made it possible to deal with huge amount of data. Thus the challenge that remains is to find accurate and efficient methods that are not too time consuming. The study reported here specifically focuses on the half-sib family animal design. Our objective was to determine...
Tipo: Journal Article Palavras-chave: PROBABILISTIC MODELLING; LINKAGE DISEQUILIBRIUM; QTL; SNP; MARKER; GENETIC; PEDIGREE.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2010dbb9309f&uri=/notices/prodinra1/2010/12/
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Rootstock genetic engineering for GFLV resistance in grapevine Inra
Goldschmidt, V.; Vigne, E.; Marmonier, A.; Komar, V.; Demangeat, G.; Masson, J.; Lemaire, O..
Tipo: Conference Proceedings Palavras-chave: ROOSTOCK; GENETIC; GFLV; GRAPEVINE FANLEAF DISEASE; NEPOVIRUSES.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD201069103b4a&uri=/notices/prodinra1/2011/05/
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