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Registros recuperados: 13
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A molecular population genetics approach to trait discovery in rice (Oryza sativa L.) International Rice Research Institute
Garris, Amanda J..
ix, 139 p. : ill. Thesis (Ph.D.) -- Cornell University
Tipo: Thesis Palavras-chave: Rice; Molecular genetics; Chromosome mapping; Nucleotide sequences; Traits; Varieties.
Ano: 2004 URL: http://hdl.handle.net/123456789/394
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Biological and molecular characterization of Brazilian isolates of Zucchini yellow mosaic virus. Repositório Alice
SPADOTTI, D. M. de A.; WASSANO, D. T.; REZENDE, J. A. M.; CAMARGO, L. E. A.; INOUE-NAGATA, A. K..
Tipo: Artigo de periódico Palavras-chave: Potyvirus; Nucleotide sequences; Genetic variation; Zucchini yellow mosaic virus.
Ano: 2015 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1031437
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ConvolutionTR: comprehensive study of SNPs within tandem repeats. Repositório Alice
NARCISO, M. G.; YAMAGISHI, M. E. B.; KUSER-FALCAO, P. R..
P1018.
Tipo: Anais e Proceedings de eventos Palavras-chave: Bioinformática; Sequências de DNA; Algoritmo ConvolutionTR; Bioinformatics; Tandem repeat sequences; Nucleotide sequences; Algorithms.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/932803
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ConvolutionTR: comprehensive study of SNPs within tandem repeats. Repositório Alice
NARCISO, M. G.; YAMAGISHI, M. E. B.; KUSER-FALCAO, P. R..
In this work, we report for the first time a comprehensive study of SNPs within tandem repeats of a model organism. Our results show that, due their widespread occurrence, SNPs within TR deserves attention; even though some of them may be explained by simple base-calling errors.
Tipo: Parte de livro Palavras-chave: Bioinformática; Sequências de DNA; Algoritmo ConvolutionTR; Bioinformatics; Tandem repeat sequences; Nucleotide sequences; Algorithms.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/935333
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Copy number variation discovery in canchim cattle using data from SNP genotyping arrays. Repositório Alice
GONÇALVES, A. R.; PEREIRA, F. C. de P.; REGITANO, L. C. de A.; GIACHETTO, P. F..
Data from cattle genotyping using SNP arrays for genome-wide association studies, is widely available at Embrapa. The objective os this study was to use an open source tool, CNstream, for CNV identification from cattle genotyping using Illumina SNP arrays.
Tipo: Anais e Proceedings de eventos Palavras-chave: Sequência genômica; Bioinformática.; Gado.; Nucleotide sequences; Single nucleotide polymorphism; Cattle; Bioinformatics.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/946491
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Draft genome sequence of Bacillus thuringiensis strain BrMgv02-JM63, a chitinolytic bacterium isolated from oil-contaminated mangrove soil in Brazil. Repositório Alice
MARCON, J.; TAKETANI, R. G.; DINI-ANDREOTE, F.; MAZZERO, G. I.; SOARES JUNIOR, F. L.; MELO, I. S. de; AZEVEDO, J. L.; ANDREOTE, F. D..
Here, we report the draft genome sequence and the automatic annotation of Bacillus thuringiensis strain BrMgv02-JM63. This genome comprises a set of genes involved in the metabolism of chitin and N-acetylglucosamine utilization, thus suggesting the possible role of this strain in the cycling of organic matter in mangrove soils.
Tipo: Separatas Palavras-chave: Bacillus thuringiensis; Genoma; Mangue; Nucleotide sequences; Genome; Mangrove soils.
Ano: 2014 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/997160
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Draft genome sequence of Haloferax sp. strain ATB1, isolated from a semi-arid region in the Brazilian Caatinga. Repositório Alice
CASTRO, W. de O.; TORRES-BALLESTEROS, A. M.; NAKAYAMA. C. R.; MELO, I. S. de; PELLIZARI, V. H.; SILVA, A.; RAMOS, R. T. J..
Organisms in the Haloferax genus are extreme halophiles that grow in environments with pH values between 4 and 12, and temperatures between 0°C and 60°C. In the present study, a draft of the first Haloferax sp. strain ATB1 genome isolated from the region of Cariri (in Paraíba State, Brazil) is presented.
Tipo: Separatas Palavras-chave: Genoma; Microrganismo; Solo; Caatinga; Genome; Semiarid soils; Nucleotide sequences; Haloferax.
Ano: 2014 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1003559
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Draft genome sequence of Pseudomonas sp. strain CMAA 1215, a plant growth-promoting bacterium isolated from a Brazilian mangrove. Repositório Alice
VASCONCELLOS, R. L. F.; MENDES, R.; TAKETANI, R. G.; ZUCCHI, T. D.; MELO, I. S. de.
The aim of this study was to sequence the genome of the plant growth-promoting Pseudomonas sp. strain CMAA 1215, an osmotolerant bacterium isolated from mangrove soil.
Tipo: Separatas Palavras-chave: Pseudomonas sp; Regulador de crescimento; Genoma; Nucleotide sequences.
Ano: 2013 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/979521
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Genome sequences of Burkholderia sp. Strains CCGE1002 and H160, isolated from legume nodules in Mexico and Brazil. Repositório Alice
ORMEÑO-ORRILLO, E.; ROGEL, M. A.; CHUEIRE, L. M. O.; TIEDJE, J. M.; MARTÍNEZ-ROMERO, E.; HUNGRIA, M..
The genome sequences of Burkholderia sp. strains CCGE1002 from Mexico and H160 from Brazil, isolated from legume nodules, are reported. Their gene contents in relation to plant-microbe interactions and xenobiotic degradation are discussed.
Tipo: Separatas Palavras-chave: Fixação de nitrogênio; Nitrogen fixation; Nucleotide sequences.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/942353
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Marker-assisted elimination of drought-susceptible accessions in upland rice breeding. Repositório Alice
VIEIRA, A. F.; PANTALIÃO, G. F.; ABREU, F. M.; SILVEIRA, R. D.; GARCIA, A. L. B.; NEVES, L. G.; VIANELLO, R. P.; CASTRO, A. P. de; BRONDANI, C..
Breeding for water-deficit tolerance is fundamental to guarantee the sustainability of upland rice production, mainly due to the possibility of an increased frequency of drought episodes due to climate change. This work aimed to identify single nucleotide polymorphism (SNP) markers, derived from RNA sequencing (RNA-Seq), genome-wide association study (GWAS) and candidate genes from Arabidopsis, with potential for use in marker-assisted selection (MAS) for drought tolerance. RNA-Seq and GWAS were efficient in identifying useful SNP markers from the data obtained from three years of field experiments for 175 upland rice accessions, which were sequenced using 32 genes by Capture-Seq. Three genes were equally able to generate SNP markers that discriminated 95%...
Tipo: Artigo de periódico Palavras-chave: Genotyping by sequencing.; Arroz; Melhoramento genético vegetal; Resistência a seca; Rice; Plant breeding; Genetic techniques and protocols; Single nucleotide polymorphism; Nucleotide sequences; Sequence analysis; Drought tolerance..
Ano: 2018 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1088846
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Molecular, behavioral and anatomical sophistication in spider webs: insights from spinning gland RNA-seq experiments in primitive and modern spiders. Repositório Alice
PROSDOCIMI, F.; BITTENCOURT, D.; SILVA, F. R. D.; MOTTA, P. C.; RECH, E..
RNA-seq experiments conducted in 454 sequencers were carried out to produce 87.000 short-reads representing the transcriptome of two spiders?spinning glands. We produced sequences from (i) Actinopus sp., a spider from the Mygalomorphae clade, and (ii) Gasteracantha cancriformis , an Orbicularia spider. Mygalomorphae spiders are known to retain a number of primitive morphological and behavioral characters.
Tipo: Anais e Proceedings de eventos Palavras-chave: Sequências de RNA de aranhas; Nucleotide sequences; Gasteracantha cancriformis.
Ano: 2010 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/876397
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RNA-­seq analysis of Eucalyptus genotypes that differ in carbon allocation. Repositório Alice
GERHARDT, I. R.; GIACHETTO, P. F.; YAMAGISHI, M. E. B.; LOBO, F. P.; PENCHEL, R. M.; MISSIAGGIA, A. A.; ZERLOTINI, A.; SILVA, F. R. da.
Carbon allocation is the process of translocation of photosynthate from source to sink organs, and though its physiology is well known, the genetic mechanisms involved in its regulation are still poorly understood. Since differences in levels of gene expression may largely explain the observed phenotypic variation, and there is great variability among species of Eucalyptus, we decided to perform a gene expression analysis of four contrasting Eucalyptus genotypes to gain insight into the mechanisms that lead to differences in carbon allocation.
Tipo: Anais e Proceedings de eventos Palavras-chave: Sequência de RNA; Bioinformática; Alocação de carbono; Eucalyptus; Nucleotide sequences; Bioinformatics.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/949179
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Serendipitomics: a new virus found on an RNA-seq library. Repositório Alice
CASTRO, G. M. de; BOITEUX, L. S.; FONSECA, M. E. de N. F.; LOBO, F.; RECH, E.; SILVA, F. R. da.
P018.
Tipo: Anais e Proceedings de eventos Palavras-chave: Genômica; Genomics; Papaya ringspot virus; Nucleotide sequences.
Ano: 2014 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1008424
Registros recuperados: 13
Primeira ... 1 ... Última
 

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