| Registro completo |
| Provedor de dados: |
ArchiMer
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| País: |
France
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| Título: |
Human-Driven Microbiological Contamination of Benthic and Hyporheic Sediments of an Intermittent Peri-Urban River Assessed from MST and 16S rRNA Genetic Structure Analyses
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| Autores: |
Marti, Romain
Ribun, Sebastien
Aubin, Jean-baptiste
Colinon, Celine
Petit, Stephanie
Marjolet, Laurence
Gourmelon, Michele
Schmitt, Laurent
Breil, Pascal
Cottet, Marylise
Cournoyer, Benoit
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| Data: |
2017-01
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| Ano: |
2017
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| Palavras-chave: |
Peri-urban river
Benthic and hyporheic sediments
Microbial community
High throughput sequencing (HTS)
Fecal contamination
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| Resumo: |
Rivers are often challenged by fecal contaminations. The barrier effect of sediments against fecal bacteria was investigated through the use of a microbial source tracking (MST) toolbox, and by Next Generation Sequencing (NGS) of V5-V6 16S rRNA gene (rrs) sequences. Non-metric multi-dimensional scaling analysis of V5-V6 16S rRNA gene sequences differentiated bacteriomes according to their compartment of origin i.e., surface water against benthic and hyporheic sediments. Classification of these reads showed the most prevalent operating taxonomic units (OTU) to be allocated to Flavobacterium and Aquabacterium. Relative numbers of Gaiella, Haliangium, and Thermoleophilum OTU matched the observed differentiation of bacteriomes according to river compartments. OTU patterns were found impacted by combined sewer overflows (CSO) through an observed increase in diversity from the sewer to the hyporheic sediments. These changes appeared driven by direct transfers of bacterial contaminants from wastewaters but also by organic inputs favoring previously undetectable bacterial groups among sediments. These NGS datasets appeared more sensitive at tracking community changes than MST markers. The human-specific MST marker HF183 was strictly detected among CSO-impacted surface waters and not river bed sediments. The ruminant-specific DNA marker was more broadly distributed but intense bovine pollution was required to detect transfers from surface water to benthic and hyporheic sediments. Some OTU showed distribution patterns in line with these MST datasets such as those allocated to the Aeromonas, Acinetobacter, and Pseudomonas. Fecal indicators (Escherichia coli and total thermotolerant coliforms) were detected all over the river course but their concentrations were not correlated with MST ones. Overall, MST and NGS datasets suggested a poor colonization of river sediments by bovine and sewer bacterial contaminants. No environmental outbreak of these bacterial contaminants was detected.
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| Tipo: |
Text
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| Idioma: |
Inglês
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| Identificador: |
http://archimer.ifremer.fr/doc/00378/48886/49316.pdf
http://archimer.ifremer.fr/doc/00378/48886/49317.pdf
http://archimer.ifremer.fr/doc/00378/48886/49318.pdf
http://archimer.ifremer.fr/doc/00378/48886/49319.pdf
http://archimer.ifremer.fr/doc/00378/48886/49320.pdf
http://archimer.ifremer.fr/doc/00378/48886/49321.pdf
http://archimer.ifremer.fr/doc/00378/48886/49322.pdf
http://archimer.ifremer.fr/doc/00378/48886/49323.pdf
http://archimer.ifremer.fr/doc/00378/48886/49324.tif
http://archimer.ifremer.fr/doc/00378/48886/49325.tif
http://archimer.ifremer.fr/doc/00378/48886/49326.tif
DOI:10.3389/fmicb.2017.00019
http://archimer.ifremer.fr/doc/00378/48886/
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| Editor: |
Frontiers Media Sa
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| Formato: |
application/pdf
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| Fonte: |
Frontiers In Microbiology (1664-302X) (Frontiers Media Sa), 2017-01 , Vol. 8 , N. 19 , P. 1-15
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| Direitos: |
2017 Marti, Ribun, Aubin, Colinon, Petit, Marjolet, Gourmelon, Schmitt, Breil, Cottet and Cournoyer. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which
info:eu-repo/semantics/openAccess
restricted use
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