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Otolith growth in trout Oncorhynchus mykiss: supply of Ca2+ and Sr2+ to the saccular endolymph ArchiMer
Payan, P; Borelli, G; Priouzeau, F; De Pontual, Helene; Boeuf, G; Mayer Gostan, N.
Kinetic and pharmacological characteristics of Ca2+ fluxes across the saccular epithelium of trout were studied using a perfused isolated inner ear. Ca-45(2+) influx from the Ringer solution to the endolymph was 3-4 nmoles h(-1) mu(-1) endolymph, which corresponds to a global turnover rate of the endolymph calcium of 200% h(-1). Ca2+ entry into the proximal endolymph was faster than into the distal fluid. Net Ca2+ movement across the saccular epithelium depended on the direction and intensity of the chemical gradient of calcium between the Ringer solution and the endolymph. Increasing the calcium concentration in the Ringer solution up to 4.4 mmol l(-1) provoked an accumulation of Ca2+ in both proximal and distal endolymphs, and equilibrium was reached...
Tipo: Text Palavras-chave: Inner ear; Perfusion; Otolith; Endolymph; Flux; Calcium; Oncorhynchus mykiss; Trout.
Ano: 2002 URL: http://archimer.ifremer.fr/doc/2002/publication-416.pdf
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Reconstructing individual shape histories of fish otoliths: A new image-based tool for otolith growth analysis and modeling ArchiMer
Fablet, Ronan; Chessel, Anatole; Carbini, Sebastien; Benzinou, Abdesslam; De Pontual, Helene.
In this paper is presented a novel image processing tool for the extraction of geometric information in otolith images. It relies on the reconstruction of individual otolith shape histories from otolith images. Based on the proposed non-parametric level-set representation of otolith shape history, applications to the extraction of growth axes and ring structures in otolith images are first considered. A second category of applications concern the analysis of 2D otolith growth. The potential of the proposed framework is illustrated on real otolith images for various species (e.g., cod, pollock) and discussed with a particular emphasis on the genericity of the approach and on applications such as otolith shape analysis, multi-proxy otolith analysis, otolith...
Tipo: Text Palavras-chave: 2D otolith growth; Growth axis extraction; Growth ring extraction; Shape dynamics; Otolith imaging.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6319.pdf
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Growth of European hake (Merluccius merluccius) in the Gulf of Lions based on conventional tagging ArchiMer
Mellon-duval, Capucine; De Pontual, Helene; Metral, Luisa; Quemener, Loic.
Growth of European hake was estimated from the results of a conventional tagging study in the Gulf of Lions, the first tagging experiment to have been undertaken on the species in Mediterranean waters. In all, 4277 hake 15–40 cm long were tagged and released on the inshore fishing grounds during spring 2006. The overall recapture rate was 6.5% and times-at-liberty ranged from 1 to 717 d. Growth rate in hake varied with size and sex. The estimated growth parameter (von Bertalanffy k) was estimated as double previously published values based on size frequency distribution in the area. Compared with recent growth parameters derived from the tagging experiments in the Bay of Biscay, k was estimated to be slightly lower in the Gulf of Lions. With this faster...
Tipo: Text Palavras-chave: Age estimation; European hake; Growth; Mediterranean; Tagging.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00000/11134/11532.pdf
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A HMM-based model to geolocate pelagic fish from high-resolution individual temperature and depth histories: European sea bass as a case study ArchiMer
Woillez, Mathieu; Fablet, Ronan; Tran-thanh Ngo,; Lalire, Maxime; Lazure, Pascal; De Pontual, Helene.
Numerous methods have been developed to geolocate fish from data storage tags. Whereas demersal species have been tracked using tide-driven geolocation models, pelagic species which undertake extensive migrations have been mainly tracked using light-based models. Here, we present a new HMM-based model that infers pelagic fish positions from the sole use of high-resolution temperature and depth histories. A key contribution of our framework lies in model parameter inference (diffusion coefficient and noise parameters with respect to the reference geophysical fields—satellite SST and temperatures derived from the MARS3D hydrodynamic model), which improves model robustness. As a case study, we consider long time series of data storage tags (DSTs) deployed on...
Tipo: Text Palavras-chave: Fish movement; Archival tagging; Migration; Population structure; Hidden Markov Model (HMM); State-space model.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00300/41097/40270.pdf
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Daily variations of the saccular endolymph and plasma compositions in the turbot Psetta maxima: relationship with the diurnal rhythm in otolith formation ArchiMer
Edeyer, Anaick; De Pontual, Helene; Payan, P; Troadec, Herve; Severe, Armelle; Mayer-gostan, N.
We studied the circadian variations of the ionic composition ([Na+], [K+], [Cl-]), total CO2 ([tot CO2]), and protein concentration ([protein]) in the plasma and endolymph in the distal and proximal sides of the sacculus in the turbot Psetta maxima. Daily variations in total plasma calcium ([tot Ga]) were also recorded. Significant diurnal fluctuations occurred in most parameters and the spatial heterogeneity of the endolymph composition was maintained throughout a 24 h period. The main parameters implicated in otolith calcification, endolymph [tot CO2] and endolymph [protein], fluctuated diurnally, [tot CO2] was highest and [protein] lowest at night; the relative concentrations were reversed during the day. The inverse, alternating relationship of maximal...
Tipo: Text Palavras-chave: Daily cycle; Endolymph; Otolith; Chemical composition; Teleost.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00000/10572/7603.pdf
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What can exploratory modelling tell us about the ecobiology of European sea bass ( Dicentrarchus labrax ): a comprehensive overview ArchiMer
Lopez, Romain; De Pontual, Helene; Bertignac, Michel; Mahevas, Stephanie.
European sea bass, Dicentrarchus labrax, is a highly valuable species in Europe, both for aquaculture in the Mediterranean Sea and for commercial and recreational fisheries in the North East Atlantic Ocean. Subjected to increasing fishing pressure, the wild population has recently experienced significant recruitment fluctuation as well as a northward extension of its distribution area in the North Sea. While the nature of the ecological and/or physiological processes involved remains unresolved, ontogenetic habitat shifts and adult site fidelity could increase the species’ vulnerability to climate change and overfishing. As managers look for expert information to propose management scenarios leading to sustainable exploitation, exploratory modelling...
Tipo: Text Palavras-chave: Population dynamics; Essential habitats; Connectivity; Bioenergetic modeling; Phenotypic plasticity; Life cycle adaptation.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00341/45258/44699.pdf
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Growth of Northwest Iberian juvenile hake estimated by combining sagittal and transversal otolith microstructure analyses ArchiMer
Pineiro, C; Rey, J; De Pontual, Helene; Garcia, A.
Daily growth of Atlantic juvenile hake from Northwest Iberia has been estimated employing a new approach combining analyses of transversal and sagittal sections of the otoliths along the ventral radius. Age of juvenile hake ranging from 3 to 25 cm collected during a spring 2002 survey was estimated. Somatic growth followed a power fit: Fish size (TL) = 3.3254*age(0.7336) (r(2) =0.87, p < 0.001, n = 76). yielding an average individual growth rate of 0.66 mm/day (0.06). The growth model indicates that after a year's life a juvenile can reach 25 cm. Otolith ventral radius ranged from 401 to 1842 mu m and daily increments were between 104 and 387. Fish growth and otolith growth were closely related (r(2) = 0.92 p < 0.001, n = 76). These first results of...
Tipo: Text Palavras-chave: NW Iberian waters; Seasonal variation; Daily growth; Otolith microstructure; Juvenile hake.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-6111.pdf
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TNPC software - Traitement Numérique des Pièces Calcifiées / Numerical Treatment of Calcified Structures : Développement d’un logiciel dédié à l’analyse des pièces calcifiées : ArchiMer
Fave, Sébastien; Crepin, Emeline; Magalhaes, José Ramos; Ogor, Andre; De Pontual, Helene; Mahe, Kelig.
Chaque année, près d’1 million de pièces calcifiées (dont 35 000 en France) sont analysées pour l’évaluation de l’état des ressources marines. De plus, beaucoup de thématiques de recherche nécessitent elles-aussi l’utilisation de ces pièces calcifiées. Ainsi, depuis plus de 20 ans, un partenariat entre la société VSG (Visualization Sciences Group anciennement Noesis) et l’institut de recherche IFREMER (Institut Français de Recherche pour l'Exploitation de la Mer) a permis de développer le logiciel d'analyse d'images dédié aux pièces calcifiées, nommé TNPC (Traitement Numérique des Pièces Calcifiées, www.tnpc.fr). Divers projets de recherche et collaborations en particulier avec l’ENIB (Ecole Nationale des Ingénieurs de Brest) ont été nécessaires pour...
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00148/25905/23922.pdf
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A comparison of two techniques to discriminate continental origin of Atlantic salmon (Salmo salar L.) off West Greenland ArchiMer
Reddin, David; De Pontual, Helene; Prouzet, Patrick.
Two techniques of stock discrimination both utilizing scales, i. e. termed as classical technique and shape analysis, are compared for discriminating between North American and European Atlantic salmon (Salmo salar L.) caught off West Greenland. Three scales from each of 60 salmon were analyzed: 30 from North American and 30 from European-origin salmon collected from home rivers in 1982. The best results indicated misclassification and error rates of 0% for shape analysis and 5.0% and ± 1.7%, respectively, for the classical technique. A nested ANOVA indicated that variation was greater between scales of salmon of North American and European origin than from several scales from the same salmon. It was concluded that shape analysis with computer-aided...
Tipo: Text Palavras-chave: Salmo salar; Scalimétrie; Analyse de forme; Discrimination; Salmo salar; Meristics; Shape analysis; Discrimination.
Ano: 1992 URL: http://archimer.ifremer.fr/doc/00189/30073/28561.pdf
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Contribution of a bioenergetics model to investigate the growth and survival of European seabass in the Bay of Biscay – English Channel area ArchiMer
Dambrine, Chloe; Huret, Martin; Woillez, Mathieu; Pecquerie, Laure; Allal, Francois; Servili, Arianna; De Pontual, Helene.
The European seabass (Dicentrarchus labrax) is a species of particular ecological and economic importance. Stock assessments have recently revealed the worrying state of the “Northern stock”, probably due to overfishing and a series of poor recruitments. The extent to which these poor recruitments are due to environmental variability is difficult to assess, as the processes driving the seabass life cycle are poorly known. Here we investigate how food availability and temperature may affect the growth and survival of wild seabass at the individual scale. To this end, we developed a bioenergetics model based on the Dynamic Energy Budget (DEB) theory. We applied it to seabass population of the Northeast Atlantic region (Bay of Biscay – English Channel area)...
Tipo: Text Palavras-chave: Dicentrarchus labrax Northeast Atlantic Dynamic Energy Budget theory Growth; Starvation Early-life stages.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00612/72397/71341.pdf
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Programme Charente-Marennes-Oléron Volet Maritime ArchiMer
Heral, Maurice; Bacher, Cedric; Razet, Daniel; Prou, Jean; Deslous-paoli, Jean-marc; De Pontual, Helene; Raillard, Olivier; Maestrini, Serge; Mornet, Francoise; Menesguen, Alain; Sautour, Benoit; Robert, Jean-michel.
Les termes du contrat passé entre le Fond de la Recherche et de la Technologie et l'IFREMER précisent qu ele programmer a pour objectif une gestion rationnelle du milieu conchylicole avec notamment une mise au point de modèles (voir notification de l'aide en annexe). Un premier modèle appelé modèle global par analogie avec les modèles de pêche met en évidence la limite de la capacité trophique du bassin de Marennes-Oléron pour les huîtres cultivées. Un modèle analytique avec un modèle physique simple permet dans un premier temps de développer un modèle de croissance des huîtres en fonction de la nourriture disponible et d'effectuer des simulations qui confirment l'influence du stock sur les performances de croissance des bivalves. Un troisième approche...
Tipo: Text Palavras-chave: Modèle production; Biomasse; Huître creuse; Crassostrea gigas; Modèle énergétique; Croissance; Modèle multiboîte; Marennes Oléron; Modèle trophique; Marennes Oléron.
Ano: 1986 URL: http://archimer.ifremer.fr/doc/00048/15908/13337.pdf
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Analyse des potentielles mesures de gestion du bar ArchiMer
Le Goff, Ronan; Drogou, Mickael; De Pontual, Helene; Talidec, Catherine; Berthou, Patrick; Biseau, Alain.
Une réunion technique a été organisée le 21 mai 2013 par la Commission européenne afin de faire le point sur l’état du stock de bar commun (Dicentrarchus labrax) dans les eaux européennes de l’Atlantique du Nord Est. Cette réunion a conclu que le stock de bar peut être considéré comme dans un état « alarmant », et la Commission a demandé aux Etats membres d’identifier les mesures de gestion qu’ils seraient à même de mettre en place dans les meilleurs délais pour obtenir une diminution des captures de 20%. C’est dans ce contexte que la DPMA a adressé à l’Ifremer la présente saisine, en attendant plus particulièrement de l’Institut : - de lister les mesures concrètes applicables aux pêcheries françaises et permettant de réduire les captures et donc la...
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Ano: 2013 URL: https://archimer.ifremer.fr/doc/00165/27657/25827.pdf
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Characterising Essential Fish Habitat using spatio‐temporal analysis of fishery data: A case study of the European seabass spawning areas ArchiMer
Dambrine, Chloe; Woillez, Mathieu; Huret, Martin; De Pontual, Helene.
Fish habitats sustain essential functions for fish to complete their life cycle, such as feeding, growing and spawning. Conservation is crucial to maintain fish populations and their exploitation. Since 2013, the spawning stock biomass of the northern stock of European seabass (Dicentrarchus labrax) has been in a worrying state. A series of low recruitments with a persistently high level of fishing has been blamed, raising concerns about the processes involved in seabass reproduction and settlement in nurseries. Here, we characterise seabass spawning areas along the French Atlantic coast using vessel monitoring system (VMS) data. A non‐linear geostatistical approach was applied, from 2008 to 2014, to detect locations where seabass aggregate for spawning....
Tipo: Text Palavras-chave: Bay of Biscay; Bayesian spatio‐temporal modelling; Dicentrarchus labrax; English Channel; European sea bass; Non‐linear geostatistics; Spawning grounds.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00668/77997/80218.pdf
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Aide à l'estimation des stocks d'huîtres en élevage par télédétection basse altitude: étude de faisabilité ArchiMer
De Pontual, Helene.
Existing methods to assess the biomass of reared oyster's stocks are ail based on aerial photographs and field data. In this study, we propose an automatic processing of the digitized aerial photographs making use of advanced vision tools such as mathematical morphology. The implemented a1gorithms are described. They give enough convincing results to suggest further developments. However, this method requires the use of digital images. To this respect, a part of this paper deals with data acquisition problems. We particularly study the feasibility of using airborne video recording system. Such device should give a quite accurate information, easier to process than the classical aerial photographs.
Tipo: Text Palavras-chave: Huître; Estimation des stocks; Photographie aérienne; Vidéo aéroportée; Analyse d'images numériques; Oysters; Stock assessment; Aerial pholographs; Airborne videography; Digital image processing.
Ano: 1989 URL: http://archimer.ifremer.fr/doc/00105/21669/19247.pdf
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Synthèse des informations disponibles sur le Bar : flottilles, captures, marché ArchiMer
Drogou, Mickael; Biseau, Alain; Berthou, Patrick; De Pontual, Helene; Habasque, Jeremie; Le Grand, Christelle; Pitel-roudaut, Mathilde.
Les résultats de ce travail sont établis en France métropolitaine (façades Manche/ Mer du Nord / Atlantique. La structure du rapport comprend d’une part une présentation des données disponibles en 2009 de la pêche professionnelle inscrite au fichier Flotte de Pêche Communautaire (FPC), et d’autre part les résultats de la dernière enquête sur la pêche plaisance réalisée entre 2009 et 2011. En fin de document une présentation des conclusions du groupe de travail du CIEM (WGNEW 2010) est faite en indiquant les données manquantes à collecter pour l’amélioration des diagnostics. Une réflexion concernant les mesures de gestion est ensuite menée à l’aide des résultats disponibles.
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00035/14577/11879.pdf
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Manual of Fish Sclerochronology ArchiMer
Panfili, Jacques; De Pontual, Helene; Troadec, Herve; Wrigh, Peter J..
Sclerochronology, the study of calcified structures to reconstruct the past history of living organisms, is central to fish biology and fisheries management. This manual aims to provide an overview of the current theoretical and practical aspects of sclerochronological studies. By providing information on the nature of calcified structures (otoliths, scales, skeleton), their uses in fish research and methods for preparation and examination, the manual constitutes a comprehensive guide for researchers, technicians and students either new to the field or interested in expanding their range of expertise. The enclosed multimedia version (DVD) is supplemented by videos illustrating the main technical procedures with an alternative navigation mode based on...
Tipo: Text Palavras-chave: Age; Age determination; Biological aging; Chemistry; Growth; Otolith reading; Otoliths; Scale reading; Scales; Skeleton.
Ano: 2002 URL: http://archimer.ifremer.fr/doc/00017/12801/9742.pdf
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Characterization and variations of organic parameters in teleost fish endolymph during day-night cycle, starvation and stress conditions ArchiMer
Guibbolini, M; Borelli, G; Mayer Gostan, N; Priouzeau, F; De Pontual, Helene; Allemand, D; Payan, P.
The aim of the present work was to examine the modifications of the organic composition of fish endolymph under environmental conditions (day-night cycle, starvation and Cl-2-Stress) known to modify otolith growth. Endolymph electrophoretic patterns were compared. An antibody raised against the trout otolith organic matrix allowed examining the variations of organic matrix precursors in the endolymph under the above conditions. Western blot analysis showed bands around 60-80 kDa. A 50% decrease of immunolabelling was observed during the night whereas increases were seen after starvation (factor 3) or stress (factor 2) suggesting that these variations could be related to the organic matrix deposit. A factor retarding in vitro CaCO3 crystallization (FRC) was...
Tipo: Text Palavras-chave: Turbot; Trout; Stress; Starvation; Day night cycle; Organic matrix; Otolith calcification; In vitro crystallization; Endolymph.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1875.pdf
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La détermination de l'âge par scalimétrie chez le saumon atlantique (Salmo salar) dans son aire de répartition méridionale : utilisation pratique et difficultés de la méthode ArchiMer
Baglinière, J. L.; Bomassi, P.; Bousquet, B.; Chancerel, F.; De Pontual, Helene; Dumas, J.; Euzenat, G.; Fontenelle, G.; Fournel, F.; Gayou, F.; Luquet, J. F.; Maisse, G.; Martin Ventura, J. A.; Marty, A.; Nihouarn, A.; Porcher, J. P.; Prevost, E.; Prouzet, Patrick; Pustelnik, G.; Richard, A.; Troadec, Herve.
This report confirms interpretation criteria used in scale reading for age determination of Atlantic Salmon in freshwater and in sea water with typical examples. The difficulties for age determination of wild and reared populations by showing atypical examples are presented. Finally some recommandations to a better knowledge of Atlantic salmon population in south distribution area are proposed.
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Ano: 1985 URL: https://archimer.ifremer.fr/doc/00480/59127/61755.pdf
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Elaboration d'un plan de gestion du bar ArchiMer
Drogou, Mickael; Biseau, Alain; Berthou, Patrick; De Pontual, Helene; Habasque, Jeremie; Le Grand, Christelle; Pitel-roudaut, Mathilde.
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00049/16007/14661.pdf
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Do environmental conditions (temperature and food composition) affect otolith shape during fish early-juvenile phase? An experimental approach applied to European Seabass (Dicentrarchus labrax) ArchiMer
Mahé, Kelig; Gourtay, Clemence; Bled--defruit, Geoffrey; Chantre, Celina; De Pontual, Helene; Amara, Rachid; Claireaux, Guy; Audet, C.; Zambonino-infante, Jose-luis; Ernande, Bruno.
Otolith shape is an efficient tool for fish stock discrimination. Therefore, it is crucial to identify the environmental parameters that could influence otolith morphogenesis and growth. Current global ocean warming negatively affects the production of polyunsaturated fatty acids (EPA and DHA) by phytoplankton and thus their availability in marine food webs. As EPA and DHA are essential nutrients for most fish species, their deficiency could affect many aspects of fish physiology, notably otolith morphogenesis. The goal of this study was to assess experimentally the combined influences of temperature (T) and dietary polyunsaturated fatty acid (PUFA) content on European seabass (Dicentrarchus labrax) otolith morphogenesis during early life stages. 300...
Tipo: Text Palavras-chave: N-3 polyunsaturated fatty acids; Otolith shape; Temperature effect; Elliptic Fourier descriptors; Multivariate mixed-effects models; Directional asymmetry.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00588/70054/68017.pdf
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