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| Registros recuperados: 99 | |
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| Faria,Danielle Assis de; Guimarães,Simone Eliza Facioni; Lopes,Paulo Sávio; Pires,Aldrin Vieira; Paiva,Samuel Rezende; Sollero,Bruna Pena; Wenceslau,Amauri Arias. |
| The association between G316A growth hormone polymorphism and quantitative traits was investigated in an F2 population of pigs. Association analyses were performed using a statistical model that included genotype, sex, batch and sex by genotype interaction as fixed effects and sire as random effect. The polymorphism was associated with the number of right teats (p = 0.03), heart weight (p = 0.04), lung weight (p = 0.05), carcass length determined by the Brazilian carcass classification method (p = 0.04), picnic shoulder weight (p = 0.07), jowl weight (p = 0.01), pH 24 h after slaughtering (p = 0.03) and drip loss (p = 0.01). Interaction between genotype and sex was observed for six performance traits. The additive effect was significant (p < 0.10) for... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Candidate genes; Divergent cross; Molecular marker; Sex x genotype interaction; Swine. |
| Ano: 2006 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572006000400010 |
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| Silva,Kleibe de Moraes; Paixão,Débora Martins; Silva,Priscila Vendramini; Solero,Bruna Pena; Pereira,Mario Sérgio; Lopes,Paulo Sávio; Guimarães,Simone Eliza Facioni. |
| The objective was to map QTL on porcine chromosome 4 and to associate them with carcass and internal organ traits in an F2 population. The F1 population was produced by outbreed crossing, using two native Brazilian breed Piau boars and 18 commercial sows. A total of 617 F2 animals issued from 11 F1 boars and 54 F1 sows were typed for a total of five microsatellite markers. The data were analyzed by multiple regressions developed for the analysis of crosses between outbred lines, using the QTL Express software. Significant evidence for QTL was found for pig chromosome 4 regarding carcass and internal organ traits. All QTL were detected in the same region of the chromosome, designated FAT1. |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Fatness; Pig production; Divergent crosses; Microsatellite markers; QTL mapping. |
| Ano: 2008 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000300013 |
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| Mota,Rodrigo Reis; Lopes,Paulo Sávio; Marques,Luiz Fernando Aarão; Silva,Luciano Pinheiro da; Resende,Marcos Deon Vilela de; Torres,Robledo de Almeida. |
| The weight records from Simmental beef cattle were used in a genetic evaluation of growth with or without the inclusion of animals obtained by embryo transfer. A multi-trait model in which embryo transfer individuals were excluded (MTM1) contained 29,510 records from 10,659 animals, while another model without exclusion of these animals (MTM2) contained 62,895 weight records from 23,160 animals. The weight records were adjusted for ages of 100, 205, 365, 450, 550 and 730 days. The (co)variance components and genetic parameters were estimated by the restricted maximum likelihood method. The (co)variance components were similar in both models, except for maternal permanent environment variance. Direct heritabilities (h²d) in MTM1 were 0.04, 0.11, 0.20, 0.27,... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Body weight; (co)variance components; Heritability. |
| Ano: 2013 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572013000100007 |
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| Silva,Fabyano Fonseca e; Resende,Marcos Deon V. de; Rocha,Gilson Silvério; Duarte,Darlene Ana S.; Lopes,Paulo Sávio; Brustolini,Otávio J.B.; Thus,Sander; Viana,José Marcelo S.; Guimarães,Simone E.F.. |
| In the current post-genomic era, the genetic basis of pig growth can be understood by assessing SNP marker effects and genomic breeding values (GEBV) based on estimates of these growth curve parameters as phenotypes. Although various statistical methods, such as random regression (RR-BLUP) and Bayesian LASSO (BL), have been applied to genomic selection (GS), none of these has yet been used in a growth curve approach. In this work, we compared the accuracies of RR-BLUP and BL using empirical weight-age data from an outbred F2 (Brazilian Piau X commercial) population. The phenotypes were determined by parameter estimates using a nonlinear logistic regression model and the halothane gene was considered as a marker for evaluating the assumptions of the GS... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Bayesian LASSO; Nonlinear regression; SNP effects. |
| Ano: 2013 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572013000400010 |
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| Fonseca,Isabela; Silva,Priscila Vendramini; Lange,Carla Christine; Guimarães,Marta F.M.; Weller,Mayara Morena Del Cambre Amaral; Sousa,Katiene Régia Silva; Lopes,Paulo Sávio; Guimarães,José Domingos; Guimarães,Simone E.F.. |
| In order to characterize the expression of genes associated with immune response mechanisms to mastitis, we quantified the relative expression of the IL-2, IL-4, IL-6, IL-8, IL-10, IFN-γ and TNF-α genes in milk cells of healthy cows and cows with clinical mastitis. Total RNA was extracted from milk cells of six Black and White Holstein (BW) cows and six Gyr cows, including three animals with and three without mastitis per breed. Gene expression was analyzed by real-time PCR. IL-10 gene expression was higher in the group of BW and Gyr cows with mastitis compared to animals free of infection from both breeds (p < 0.05). It was also higher in BW Holstein animals with clinical mastitis (p < 0.001), but it was not significant when Gyr cows with and... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Cytokine; Gene expression; Immune response; Real-time PCR. |
| Ano: 2009 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572009000400018 |
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| Araújo,Adriana Mello de; Guimarães,Simone Eliza Facioni; Machado,Thea Mírian Medeiros; Lopes,Paulo Sávio; Pereira,Carmen Silva; Silva,Francisco Luiz Ribeiro da; Rodrigues,Marcelo Teixeira; Columbiano,Virgínia de Souza; Fonseca,Cleusa Graça da. |
| Brazilian naturalized goat breeds are adapted to the semiarid conditions prevalent in the Northeast region of the country (which has the largest Brazilian goat heard) and represent an as yet uninvestigated source of genetic diversity. Currently, imported goat breeds are crossed with Brazilian naturalized goat breeds, endangering the genetic potential of the naturalized breeds. We used 11 microsatellite markers to determine the genetic diversity among imported (non-naturalized) dairy Alpine and Saanen goats and naturalized Brazilian Moxotó goats. We genotyped 292 goats from three herds (one private, one from the University of Minas Gerais and the Moxotó conservation herd from Embrapa Caprinos) and found that the general heterozygosity was 0.6952 for Alpine,... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Conservation; DNA microsatellite; Genetic distance; Genetic diversity; Goats. |
| Ano: 2006 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572006000100014 |
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| Cobuci,Jaime Araujo; Euclydes,Ricardo Frederico; Lopes,Paulo Sávio; Costa,Claudio Napolis; Torres,Robledo de Almeida; Pereira,Carmen Silva. |
| Test-day milk yield records of 11,023 first-parity Holstein cows were used to estimate genetic parameters for milk yield during different lactation periods. (Co)variance components were estimated using two random regression models, RRM1 and RRM2, and the restricted maximum likelihood method, compared by the likelihood ratio test. Additive genetic variances determined by RRM1 and additive genetic and permanent environmental variances estimated by RRM2 were described, using the Wilmink function. Residual variance was constant throughout lactation for the two models. The heritability estimates obtained by RRM1 (0.34 to 0.56) were higher than those obtained by RRM2 (0.15 to 0.31). Due to the high heritability estimates for milk yield throughout lactation and... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Random regression models; REML method; Genetic parameters; Test-day milk yield; Holstein cows. |
| Ano: 2005 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572005000100013 |
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| Band,Guilherme de Oliveira; Guimarães,Simone Eliza Facioni; Lopes,Paulo Sávio; Schierholt,Alex Sandro; Silva,Kleibe Moraes; Pires,Aldrin Vieira; Benevenuto Júnior,Augusto Aloísio; Gomide,Lúcio Alberto de Miranda. |
| The PSS genotypes of 596 F2 pigs produced by initial mating of Brazilian commercial sows and native boars were characterized by PCR-RFLP and the pork quality traits were evaluated. Among the 596 pigs studied, 493 (82.7%) were NN and 103 (17.3%) were Nn. There were no differences between NN and Nn pigs in the following pork qualities: pHu (5.71 ± 0.16 vs 5.70 ± 0.11), intramuscular fat (1.55 ± 0.64% vs 1.65 ± 0.67%), shear force (5552 ± 878 g/1.2 cm vs 5507 ± 826 g/1.2 cm), lightness (44.96 ± 2.05 vs 45.01 ± 1.92), redness (0.64 ± 0.60 vs 0.79 ± 0.55), yellowness (6.62 ± 0.56 vs 6.65 ± 0.48), hue (84.28 ± 5.53 vs 83.41 ± 4.85), or chroma (6.68 ± 0.52 vs 6.73 ± 0.52). However, pork from Nn pigs had a significantly (p < 0.05) lower pH45 (6.41 ± 0.27 vs... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Meat quality; PCR-RFLP; Pork; PSE; PSS; Pig. |
| Ano: 2005 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572005000100015 |
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| Band,Guilherme de Oliveira; Guimarães,Simone Eliza Facioni; Lopes,Paulo Sávio; Peixoto,Jane de Oliveira; Faria,Danielle Assis; Pires,Aldrin Vieira; Figueiredo,Frederico de Castro; Nascimento,Carlos Souza do; Gomide,Lúcio Alberto de Miranda. |
| The PSS genotypes of 596 F2 pigs produced by initial mating of Brazilian native boars commercial sows and were characterized by PCR-RFLP and their carcass and performance traits were evaluated. Among the 596 animals analyzed, 493 (82.72%) were characterized as NN and 103 (17.28%) as Nn. With respect to carcass traits, Nn animals presented higher (p < 0.05) right half carcass weight, left half carcass weight, loin depth and loin eye area, and lower shoulder backfat thickness, backfat thickness between last and next to last but one lumbar vertebrae and backfat thickness after last rib at 6.5 cm from the midline compared to NN animals. Nn animals also showed (p < 0.05) higher values for most of the cut yields, indicating higher cutting yields for... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Carcass; Performance; PSS gene; PCR-RFLP; Pig. |
| Ano: 2005 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572005000100016 |
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| Torres Filho,Rodolpho de Almeida; Torres,Robledo de Almeida; Lopes,Paulo Sávio; Pereira,Carmen Silva; Euclydes,Ricardo Frederico; Araújo,Cláudio Vieira de; Silva,Martinho de Almeida e. |
| The selection and evaluation of breeds and purebred lines to be used as the parental stock is an important step for the success of any animal breeding program. In this study, the feed:gain ratio, backfat thickness corrected for 100 kg, age to 100 kg, average daily gain, and age of sow at first farrowing were used to evaluate the genetic trends for direct and maternal additive genetic values in Large White pigs. The total number of piglets born or born alive and the litter weight at birth were used as indicators of the genetic trends for the direct additive values. The genetic trends were calculated by regression of the average predicted genetic values per year for each trait versus the offspring's year of birth (for performance traits) or versus the dam... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Average daily gain; Backfat thickness; Birth litter weight. |
| Ano: 2005 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572005000100017 |
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| Carmo,Fausto Moreira da Silva; Guimarães,Simone Eliza Facioni; Lopes,Paulo Sávio; Pires,Aldrin Vieira; Guimarães,Marta Fonseca Martins; Silva,Marcos Vinícius Gualberto Barbosa da; Schierholt,Alex Sandro; Silva,Kleibe de Moraes e; Gomide,Lúcio Alberto de Miranda. |
| We studied the phenotypic effects of polymorphisms at the MYF5 gene in a divergent F2 swine population and found that one polymorphism was due to an insertion and another to a deletion. The genotypes of 359 F2 animals were obtained and the Normal/Normal (NN) and Normal/Insertion (NI) genotypes analyzed to determine associations with phenotypic data for performance, carcass and meat quality traits. Significant differences were observed (p < 0.05) between NN and NI animals for drip (NN = 3.14 ± 1.56; NI = 3.69 ± 2.78%), cooking (NN = 32.26 ± 2.41; NI = 33.21 ± 2.31%) and total loss (NN = 34.16 ± 2.63 and NI = 34.97 ± 2.08%). The Deletion marker was not statistically tested. The results indicate that the allelic variant Insertion is associated with a... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Myogenesis; DNA sequencing; Pig production; PCR. |
| Ano: 2005 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572005000300004 |
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| Santos,Patricia Mendes dos; Nascimento,Ana Carolina Campana; Nascimento,Moysés; Silva,Fabyano Fonseca e; Azevedo,Camila Ferreira; Mota,Rodrigo Reis; Guimarães,Simone Eliza Facioni; Lopes,Paulo Sávio. |
| Abstract: The objective of this work was to evaluate the use of regularized quantile regression (RQR) to predict the genetic merit of pigs for asymmetric carcass traits, compared with the Bayesian lasso (Blasso) method. The genetic data of the traits carcass yield, bacon thickness, and backfat thickness from a F2 population composed of 345 individuals, generated by crossing animals from the Piau breed with those of a commercial breed, were used. RQR was evaluated considering different quantiles (τ = 0.05 to 0.95). The RQR model used to estimate the genetic merit showed accuracies higher than or equal to those obtained by Blasso, for all studies traits. There was an increase of 6.7 and 20.0% in accuracy when the quantiles 0.15 and 0.45 were considered in... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Sus scrofa; Blasso; Shrinkage. |
| Ano: 2018 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2018000901011 |
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| Rossi,Robson Marcelo; Martins,Elias Nunes; Lopes,Paulo Sávio; Silva,Fabyano Fonseca e. |
| O objetivo deste trabalho foi apresentar modelagens alternativas, uni e bivariadas, para avaliação da conversão alimentar (CA) de suínos da raça Piau, com uso de inferência bayesiana. Os efeitos de sexo e genótipo sobre a CA dos animais foram avaliados por meio de procedimentos de simulação de Monte Carlo via cadeias de Markov (MCMC) e de integração aproximada aninhada de Laplace (INLA). O modelo univariado foi avaliado com diferentes distribuições para o erro - normal (gaussiana), t de Student, gama, log-normal e skew-normal -, enquanto, para o modelo bivariado, considerou-se o erro normal. A distribuição skew-normal foi o modelo mais parcimonioso para inferir sobre a resposta direta (univariada) da CA aos efeitos de sexo e genótipo, os quais não foram... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Análise multivariada; Desempenho nutricional; INLA; MCMC; Síndrome do estresse suíno.. |
| Ano: 2014 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2014001000754 |
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| Pinheiro,Valeria Rosado; Silva,Fabyano Fonseca e; Guimarães,Simone Eliza Facioni; Resende,Marcos Deon Vilela de; Lopes,Paulo Sávio; Cruz,Cosme Damião; Azevedo,Camila Ferreira. |
| O objetivo deste trabalho foi avaliar eficiência de modelos de regressão aleatória (MRA) para detectar locus de características quantitativas (QTL) para características de crescimento, em suínos. Utilizou-se uma população divergente F2 Piau x Comercial. A eficiência da metodologia proposta na detecção de QTL foi comparada à da metodologia tradicional de regressão por intervalo de mapeamento. Para tanto, utilizaram-se MRA com efeitos aleatórios poligênicos, de ambiente permanente e de QTL, tendo-se utilizado o enfoque de matriz de covariância "identical‑by‑descent" associada aos efeitos de QTL. Testou-se a significância dos efeitos de QTL mediante a razão de verossimilhanças, tendo-se considerado o modelo como completo quando houve efeito de QTL, ou nulo,... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Sus scrofa; Curvas de crescimento; Dados longitudinais; "identical‑by‑descent"; Locos de características quantitativas; Seleção assistida por marcadores. |
| Ano: 2013 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2013000200009 |
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| Silva,Delvan Alves da; Silva,Fabyano Fonseca e; Ventura,Henrique Torres; Junqueira,Vinícius Silva; Silva,Alessandra Alves da; Mota,Rodrigo Reis; Lopes,Paulo Sávio. |
| Abstract: The objective of this work was to evaluate the criteria for the formation of contemporary groups (CGs) in the genetic evaluation of body weight at weaning in Nellore cattle. A total of 713,474 records from 3,066 herds located in Midwestern and Northern Brazil were used. Data were obtained from the genealogical registry of zebu breeds of the Brazilian association of zebu breeders. Data structures were defined based on the number of standard deviations (SDs) for outlier removal (±2.0, ±2.5, ±3.0, and ±3.5) and on the minimal number of animals per CG (3, 7, and 15). Genetic evaluation was performed with an animal model using Bayesian inference. Data structures with ±3.5 SDs and CG with at least 15 animals presented the highest additive genetic... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Heritability; Outliers; Zebu.. |
| Ano: 2017 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2017000800643 |
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| Azevedo,Camila Ferreira; Resende,Marcos Deon Vilela de; Silva,Fabyano Fonseca e; Lopes,Paulo Sávio; Guimarães,Simone Eliza Facioni. |
| O objetivo deste trabalho foi avaliar a eficiência do método de regressão via componentes independentes (ICR) na estimação de valores genéticos genômicos e dos efeitos de marcadores SNP para características de carcaça de uma população F2 de suínos (Piau x linhagem comercial). Os métodos foram avaliados por meio da concordância entre os valores genéticos preditos e os fenótipos corrigidos, observados por validação cruzada, e também foram comparados com outros métodos geralmente utilizados para os mesmos propósitos, tais como RR-BLUP, PCR e PLS. Os métodos ICR e PCR apresentam resultados similares, mas o método ICR apresenta maiores valores de acurácia. |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Sus scrofa; BLUP; Marcadores SNP; Regressão aleatória; Redução dimensional. |
| Ano: 2013 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2013000600007 |
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| Pereira,Rodrigo Junqueira; Lopes,Paulo Sávio; Verneque,Rui da Silva; Santana Júnior,Mário Luiz; Lagrotta,Marcos Rodrigues; Torres,Robledo de Almeida. |
| O objetivo deste trabalho foi estimar funções de covariância para a produção de leite no dia do controle (PLDC). Foram analisados 27 mil registros de PLDC de 3.362 primeiras lactações de vacas da raça Gir leiteira, paridas entre 1990 e 2007. As PLDC foram agrupadas em vinte classes quinzenais, analisadas por modelos de regressão aleatória, cujos efeitos aleatórios, genético-aditivo e de ambiente permanente foram modelados pelas funções de Wilmink (W) ou Ali & Schaeffer (AS). A modelagem da variância residual (VR) foi ajustada por meio de 1, 4, 6 ou 10 classes. As estimativas de herdabilidade para a PLDC variaram de 0,12 a 0,32, para a função AS, e de 0,09 a 0,33, para a função W, e foram maiores ao início da lactação. As correlações genéticas entre... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Bovinos de leite; Função paramétrica; Inferência bayesiana; Parâmetros genéticos. |
| Ano: 2010 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2010001100011 |
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| Carneiro,Paulo Luiz Souza; Malhado,Carlos Henrique Mendes; Euclydes,Ricardo Frederico; Torres,Robledo de Almeida; Lopes,Paulo Sávio; Carneiro,Antonio Policarpo Souza; Cunha,Elizângela Emídio. |
| O objetivo deste trabalho foi comparar a seleção, utilizando valores genéticos preditos pelo BLUP clássico (BLUP), BLUP marcadores (BLUPM) e pela seleção individual (SI), usando simulação com o programa Genesys. Para obter a matriz de similaridade genética utilizada no BLUPM, foram simulados cem marcadores moleculares do tipo microssatélite (SSR - Simple Sequence Repeat), por meio de um coeficiente de similaridade correspondente à distância euclideana média para dados quantitativos. A fim de comparar os diferentes métodos, utilizaram-se populações com tamanho efetivo de 66,66 e média de 30 repetições, avaliando-se os valores fenotípicos médios. Os ganhos ao longo das 20 gerações de seleção foram maiores para o BLUP em relação ao BLUPM, e este foi superior... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: BLUP; Seleção fenotípica; Simulação; Sistemas de acasalamento. |
| Ano: 2006 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2006000400010 |
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| Registros recuperados: 99 | |
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