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| Registros recuperados: 63 | |
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| Mira, Sara; Arnaud-haond, Sophie; Palma, Luis; Cancela, Maria Leonor; Beja, Pedro. |
| In bird species that have a high movement capacity, dispersal may connect subpopulations over vast geographical regions, with important consequences for the design of conservation management strategies. Here we used a molecular approach to infer the patterns and rates of dispersal among eight Mediterranean subpopulations of the endangered Bonelli's Eagle, based on 245 individuals screened at 17 microsatellite loci. There was moderate genetic differentiation between subpopulations sampled in the western (Iberia and Morocco) and eastern (Cyprus) Mediterranean, whereas differentiation among subpopulations in the former region was weak to moderate and followed a pattern of isolation by distance. Within the western Mediterranean, the small, peripheral and... |
| Tipo: Text |
Palavras-chave: Dispersal; Ecological divergence; Metapopulation; Philopatry; Population fragmentation. |
| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00148/25924/24018.pdf |
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| Becheler, Ronan; Cassone, Anne-laure; Noel, Philippe; Mouchel, Olivier; Morrison, Cheryl L.; Arnaud-haond, Sophie. |
| Sampling in the deep sea is a technical challenge, which has hindered the acquisition of robust datasets that are necessary to determine the fine-grained biological patterns and processes that may shape genetic diversity. Estimates of the extent of clonality in deep-sea species, despite the importance of clonality in shaping the local dynamics and evolutionary trajectories, have been largely obscured by such limitations. Cold-water coral reefs along European margins are formed mainly by two reef-building species, Lophelia pertusa and Madrepora oculata. Here we present a fine-grained analysis of the genotypic and genetic composition of reefs occurring in the Bay of Biscay, based on an innovative deep-sea sampling protocol. This strategy was designed to be... |
| Tipo: Text |
Palavras-chave: Cold-water coral; Lophelia pertusa; Madrepora oculata; Clonality; Fine-grained spatial genetic structure; Standardized sampling. |
| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00300/41117/40291.pdf |
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| Nikolic, Natacha; Devloo-delva, Floriaan; Bailleul, Diane; Noskova, Ekaterina; Rougeux, Clément; Liautard-haag, Cathy; Hassan, Mohamad; Marie, Amandine; Borsa, Philippe; Feutry, Pierre; Grewe, Peter; Davies, Campbell; Farley, Jessica; Fernando, Daniel; Biton Porsmoguer, Sébastien; Poisson, Francois; Parker, Denham; Aulich, Jorden; Lansdell, Matt; Marsac, Francis; Arnaud-haond, Sophie. |
| The blue shark Prionace glauca is a cosmopolitan species that inhabits all oceans worldwide except the poles. Several IUCN regional assessments have classified it as Near Threatened, mostly due to overfishing. Previous genetic studies that have used classical genetic markers failed to reject the hypothesis that the species is a single worldwide population (panmixia). As such, the blue shark was proposed to be an archetype of the ‘grey zone of population differentiation’, named to signify those cases common in the marine realm, where the split among population is too recent or too faint to be detected using classical genetic markers. Here, samples collected across the majority of the global range of blue shark were sequenced (using a specific genome scan... |
| Tipo: Text |
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| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00645/75701/76606.pdf |
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| Van Dover, C. L.; Arnaud-haond, Sophie; Gianni, M.; Helmreich, S.; Huber, J. A.; Jaeckel, A. L.; Metaxas, A.; Pendleton, L. H.; Petersen, S.; Ramirez-llodra, E.; Steinberg, P. E.; Tunnicliffe, V.; Yamamoto, H.. |
| There is increasing interest in mining minerals on the seabed, including seafloor massive sulfide deposits that form at hydrothermal vents. The International Seabed Authority is currently drafting a Mining Code, including environmental regulations, for polymetallic sulfides and other mineral exploitation on the seabed in the area beyond national jurisdictions. This paper summarizes 1) the ecological vulnerability of active vent ecosystems and aspects of this vulnerability that remain subject to conjecture, 2) evidence for limited mineral resource opportunity at active vents, 3) non-extractive values of active vent ecosystems, 4) precedents and international obligations for protection of hydrothermal vents, and 5) obligations of the International Seabed... |
| Tipo: Text |
Palavras-chave: Polymetallic sulfides; Seafloor Massive Sulfides (SMS); International Seabed Authority (ISA); Convention on Biological Diversity (CBD); Vulnerable Marine Ecosystems (VME); Precautionary approach; Deep-sea conservation. |
| Ano: 2018 |
URL: http://archimer.ifremer.fr/doc/00425/53627/54454.pdf |
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| Usandizaga, Sara; Buschmann, Alejandro H.; Camus, Carolina; Kappes, José Luis; Arnaud-haond, Sophie; Mauger, Stéphane; Valero, Myriam; Guillemin, Marie Laure. |
| The objective of this study was to test, using a field experiment, the effect of genotypic diversity on productivity of farmed populations (Ancud and Chaica, Chile) of the domesticated red alga Agarophyton chilense (formerly known as Gracilaria chilensis), a species considered as economically important in Chile. Monoclonal and polyclonal (4 and 8 genotypes) subplots were outplanted into the mid intertidal in Metri Bay (Puerto Montt, Chile) during summer, a season in which A. chilense face higher temperatures (>18°C) and low nitrogen availability (<4.00 μmol). Ancud farm genotypes show higher growth rates in the monoclonal rather than the two polyclonal subplots. A similar tendency, yet not significant, was discernible in Chaica. In addition, whatever... |
| Tipo: Text |
Palavras-chave: Domestication; General‐purpose genotypes; Genotypic diversity; Productivity; Seaweed. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00605/71727/70197.pdf |
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| Arrieta, Jesus M.; Arnaud-haond, Sophie; Duarte, Carlos M.. |
| The marine realm represents 70% of the surface of the biosphere and contains a rich variety of organisms, including more than 34 of the 36 living phyla, some of which are only found in the oceans. The number of marine species used by humans is growing at unprecedented rates, including the rapid domestication of marine species for aquaculture and the discovery of natural products and genes of medical and biotechnological interest in marine biota. The rapid growth in the human appropriation of marine genetic resources (MGRs), with over 18,000 natural products and 4,900 patents associated with genes of marine organisms, with the latter growing at 12% per year, demonstrates that the use of MGRs is no longer a vision but a growing source of biotechnological and... |
| Tipo: Text |
Palavras-chave: Marine protected areas; Marine reserves; Natural products; Gene patents; Law of the sea. |
| Ano: 2010 |
URL: https://archimer.ifremer.fr/doc/00018/12897/9935.pdf |
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| Aires, Tania; Serrao, Ester A.; Kendrick, Gary; Duarte, Carlos M.; Arnaud-haond, Sophie. |
| Biological invasions rank amongst the most deleterious components of global change inducing alterations from genes to ecosystems. The genetic characteristics of introduced pools of individuals greatly influence the capacity of introduced species to establish and expand. The recently demonstrated heritability of microbial communities associated to individual genotypes of primary producers makes them a potentially essential element of the evolution and adaptability of their hosts. Here, we characterized the bacterial communities associated to native and non-native populations of the marine green macroalga Caulerpa racemosa through pyrosequencing, and explored their potential role on the strikingly invasive trajectory of their host in the Mediterranean. The... |
| Tipo: Text |
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| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00157/26791/24886.pdf |
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| Lagabrielle, Erwann; Crochelet, Estelle; Andrello, Marco; Schill, Steven R.; Arnaud-haond, Sophie; Alloncle, Neil; Ponge, Benjamin. |
| Connectivity is a crucial process underpinning the persistence, recovery, and productivity of marine ecosystems. The Convention on Biological Diversity, through the Aichi Target 11, has set the ambitious objective of implementing a ‘well connected system of protected areas’ by 2020. This paper identifies eight challenges toward the integration of connectivity into MPA network management and planning. A summary table lists the main recommendations in terms of method, tool, advice, or action to address each of these challenges. Authors belong to a science–management continuum including researchers, international NGO officers, and national MPA agency members. Three knowledge challenges are addressed: selecting and integrating connectivity measurement metrics;... |
| Tipo: Text |
Palavras-chave: Ocean; Coastal; Conservation evaluation; Marine protected areas; Spatial modelling; Fishing. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00226/33742/33891.pdf |
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| Aires, Tania; Marba, Nuria; Serrao, Ester A.; Duarte, Carlos M.; Arnaud-haond, Sophie. |
| Molecular analyses of bacteria associated with photosynthetic organisms are often confounded by coamplification of the chloroplastidial 16S rDNA with the targeted bacterial 16S rDNA. This major problem has hampered progress in the characterization of bacterial communities associated to photosynthetic organisms and has limited the full realization of the potential offered by the last generation of metagenomics approaches. A simple and inexpensive method is presented, based on ethanol and bleach treatments prior to extraction, to efficiently discard a great part of chloroplastidial DNA without affecting the characterization of bacterial communities through pyrosequencing. Its effectiveness for the description of bacterial lineages associated to the green... |
| Tipo: Text |
Palavras-chave: 16S; Chloroplasts; Elimination; Green algae; Metagenomics. |
| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00076/18739/16464.pdf |
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| Meistertzheim, Anne. -leila; Lartaud, Franck; Arnaud-haond, Sophie; Kalenitchenko, Dimitri; Bessalam, Manon; Le Bris, Nadine; Galand, Pierre E.. |
| Cold-water corals (CWC) are main ecosystem engineers of the deep sea, and their reefs constitute hot-spots of biodiversity. However, their ecology remains poorly understood, particularly, the nature of the holobiont formed by corals with their associated bacterial communities. Here, we analysed Madrepora oculata and Lophelia pertusa samples, collected from one location in a Mediterranean canyon in two different seasons (autumn and spring), in order to test for species specificity and temporal stability of the host-bacteria associations. The 16S rRNA sequencing revealed host-specific patterns of bacterial communities associated with L. pertusa and M. oculata, both in terms of community composition and diversity. All analyzed M. oculata polyps exhibited... |
| Tipo: Text |
Palavras-chave: Deep-Sea corals; Madrepora oculata; Lophelia pertusa; Bacterial communities; Bacterial ecology; Mediterranean Sea; Microbe-microbe and microbe-host interactions. |
| Ano: 2016 |
URL: https://archimer.ifremer.fr/doc/00332/44362/43965.pdf |
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| Arnaud-haond, Sophie; Duarte, Carlos M.; Teixeira, Sara; Massa, Sonia Isabel; Terrados, Jorge; Nguyen Hong, Tri; Phan Nguyen, Hong; Serrao, Ester A.. |
| The widespread use of Agent Orange (a mixture of phenoxyl herbicides) over Southern Vietnam by US Forces led to the decimation of mangrove forests in the Mekong Delta. Mangrove trees Avicennia alba were sampled across the Mekong Delta; their age was assessed using models based on internode growth and samples were genotyped for 6 microsatellite loci. The evolution of genetic diversity over time elapsed since local extinction was reconstructed and compared with the genetic diversity of an unaffected population from Thailand, The results show that genetic diversity of the A. alba population is still increasing in the Mekong Delta 3 decades after the end of the Vietnam War, but is reaching an asymptotic level that is comparable to the adjacent non-affected... |
| Tipo: Text |
Palavras-chave: Agent Orange; Deforestation; Mangrove; Local extinction; Demographic recovery; Genetic recovery; Recolonization genetics. |
| Ano: 2009 |
URL: http://archimer.ifremer.fr/doc/2009/publication-6898.pdf |
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| Morato, Telmo; González‐irusta, José‐manuel; Dominguez‐carrió, Carlos; Wei, Chih‐lin; Davies, Andrew; Sweetman, Andrew K.; Taranto, Gerald H.; Beazley, Lindsay; García‐alegre, Ana; Grehan, Anthony; Laffargue, Pascal; Murillo, Francisco Javier; Sacau, Mar; Vaz, Sandrine; Kenchington, Ellen; Arnaud-haond, Sophie; Callery, Oisín; Chimienti, Giovanni; Cordes, Erik; Egilsdottir, Hronn; Freiwald, André; Gasbarro, Ryan; Gutiérrez‐zárate, Cristina; Gianni, Matthew; Gilkinson, Kent; Wareham Hayes, Vonda E.; Hebbeln, Dierk; Hedges, Kevin; Henry, Lea‐anne; Johnson, David; Koen‐alonso, Mariano; Lirette, Cam; Mastrototaro, Francesco; Menot, Lenaick; Molodtsova, Tina; Durán Muñoz, Pablo; Orejas, Covadonga; Pennino, Maria Grazia; Puerta, Patricia; Ragnarsson, Stefán Á.; Ramiro‐sánchez, Berta; Rice, Jake; Rivera, Jesús; Roberts, J. Murray; Ross, Steve W.; Rueda, José L.; Sampaio, Íris; Snelgrove, Paul; Stirling, David; Treble, Margaret A.; Urra, Javier; Vad, Johanne; Oevelen, Dick; Watling, Les; Walkusz, Wojciech; Wienberg, Claudia; Woillez, Mathieu; Levin, Lisa A.; Carreiro‐silva, Marina. |
| The deep sea plays a critical role in global climate regulation through uptake and storage of heat and carbon dioxide. However, this regulating service causes warming, acidification and deoxygenation of deep waters, leading to decreased food availability at the seafloor. These changes and their projections are likely to affect productivity, biodiversity and distributions of deep‐sea fauna, thereby compromising key ecosystem services. Understanding how climate change can lead to shifts in deep‐sea species distributions is critically important in developing management measures. We used environmental niche modelling along with the best available species occurrence data and environmental parameters to model habitat suitability for key cold‐water coral and... |
| Tipo: Text |
Palavras-chave: Climate change; Cold-water corals; Deep-sea; Fisheries; Fishes; Habitat suitability modelling; Octocorals; Scleractinians; Species distribution models; Vulnerable marine ecosystems. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00610/72211/71007.pdf |
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| Decker, Carole; Olu, Karine; Arnaud-haond, Sophie; Duperron, Sebastien. |
| Vesicomyid clams harbor intracellular sulfur-oxidizing bacteria that are predominantly maternally inherited and co-speciate with their hosts. Genome recombination and the occurrence of non-parental strains were recently demonstrated in symbionts. However, mechanisms favoring such events remain to be identified. In this study, we investigated symbionts in two phylogenetically distant vesicomyid species, Christineconcha regab and Laubiericoncha chuni, which sometimes co-occur at a cold-seep site in the Gulf of Guinea. We showed that each of the two species harbored a single dominant bacterial symbiont strain. However, for both vesicomyid species, the symbiont from the other species was occasionally detected in the gills using fluorescence in situ... |
| Tipo: Text |
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| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00153/26427/24527.pdf |
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| Arnaud-haond, Sophie; Duarte, Carlos M.; Diaz-almela, Elena; Marba, Nuria; Sintes, Tomas; Serrao, Ester A.. |
| The maximum size and age that clonal organisms can reach remains poorly known, although we do know that the largest natural clones can extend over hundreds or thousands of metres and potentially live for centuries. We made a review of findings to date, which reveal that the maximum clone age and size estimates reported in the literature are typically limited by the scale of sampling, and may grossly underestimate the maximum age and size of clonal organisms. A case study presented here shows the occurrence of clones of slow-growing marine angiosperm Posidonia oceanica at spatial scales ranging from metres to hundreds of kilometres, using microsatellites on 1544 sampling units from a total of 40 locations across the Mediterranean Sea. This analysis revealed... |
| Tipo: Text |
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| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00076/18710/16283.pdf |
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| Kivela, Mikko; Arnaud-haond, Sophie; Saramaki, Jari. |
| The recent application of graph-based network theory analysis to biogeography, community ecology and population genetics has created a need for user-friendly software, which would allow a wider accessibility to and adaptation of these methods. EDENetworks aims to fill this void by providing an easy-to-use interface for the whole analysis pipeline of ecological and evolutionary networks starting from matrices of species distributions, genotypes, bacterial OTUs or populations characterized genetically. The user can choose between several different ecological distance metrics, such as Bray-Curtis or Sorensen distance, or population genetic metrics such as FST or Goldstein distances, to turn the raw data into a distance/dissimilarity matrix. This matrix is... |
| Tipo: Text |
Palavras-chave: Biogeography; Biological communities; Graph theory; Microbial ecology; Network analysis; Population genetics. |
| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00197/30853/29217.pdf |
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| Desbruyere, D; Arnaud-haond, Sophie; Fabri, Marie-claire; Guezennec, Jean; Querellou, Joel. |
| Two third of our Planet are covered by oceans more than 3,000m deep (~ 307 millions km2) and the mean depth of the sea is approximately 3,800m. The volume of the deep ocean (aphotic) is about 1,280 Millions of km3 while the volume of terrestrial ecosystems is only 125 Millions of km3. Therefore, the deep-sea ecosystem is by far the largest complex biome on the Earth. However, it suffers from a general disinterest of the public and decision makers due to its remoteness and inaccessibility. Edward Forbes "azoic theory" is still deeply rooted in most people brains and during public conferences, a large part of the audience being still amazed to hear that macroscopic life does exist in the deepest part of the sea floor (11,000m depth). |
| Tipo: Text |
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| Ano: 2007 |
URL: http://archimer.ifremer.fr/doc/00153/26452/24558.pdf |
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| Davies, J. S.; Guillaumont, Brigitte; Tempera, Fernando; Vertino, A.; Beuck, L.; Olafsdottir, S. H.; Smith, C. J.; Fossa, J. H.; Van Den Beld, Inge; Savini, A.; Rengstorf, A.; Bayle, Christophe; Bourillet, Jean-francois; Arnaud-haond, Sophie; Grehan, A.. |
| Cold-water coral (CWC) habitats can form complex structures which provide refuge, nursery grounds and physical support for a diversity of other living organisms, but despite their ecological significance, CWCs are still vulnerable to human pressures such as fishing, pollution, ocean acidification and global warming Providing coherent and representative conservation of vulnerable marine ecosystems including CWCs is one of the aims of the Marine Protected Areas networks being implemented across European seas and oceans under the EC Habitats Directive, the Marine Strategy Framework Directive and the OSPAR Convention. In order to adequately represent ecosystem diversity these initiatives require a standardised habitat classification that organises the variety... |
| Tipo: Text |
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| Ano: 2017 |
URL: http://archimer.ifremer.fr/doc/00383/49474/49961.pdf |
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| Brandt, Miriam; Pradillon, Florence; Trouche, Blandine; Henry, Nicolas; Liautard-haag, Cathy; Cambon-bonavita, Marie-anne; Cueff-gauchard, Valerie; Wincker, Patrick; Belser, Caroline; Poulain, Julie; Arnaud-haond, Sophie; Zeppilli, Daniela. |
| Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories and surveys, yet requires standardized sampling approaches and careful choice of environmental substrate. Here, we aimed to optimize the genetic assessment of prokaryote (16S), protistan (18S V4), and metazoan (18S V1–V2, COI) communities, by evaluating sampling strategies for sediment and aboveground water, deployed simultaneously at one deep-sea site. For sediment, while size-class sorting through sieving had no significant effect on total detected alpha diversity and resolved similar taxonomic compositions at the phylum level for all markers studied, it effectively... |
| Tipo: Text |
Palavras-chave: Biodiversity; Ecological genetics; Microbial ecology; Molecular ecology. |
| Ano: 2021 |
URL: https://archimer.ifremer.fr/doc/00689/80094/83149.pdf |
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| Durand, Lucile; Roumagnac, Marie; Cueff-gauchard, Valerie; Jan, Cyrielle; Guri, Mathieu; Tessier, Claire; Haond, Marine; Crassous, Philippe; Zbinden, Magali; Arnaud-haond, Sophie; Cambon-bonavita, Marie-anne. |
| Rimicaris exoculata is a deep-sea hydrothermal vent shrimp which enlarged gill chamber houses a complex trophic epibiotic community. Its gut harbours an autochthonous and distinct microbial community. This species dominates hydrothermal ecosystems megafauna along the Mid-Atlantic Ridge, regardless of contrasted geochemical conditions prevailing in them. Here, the resident gut epibiont community at four contrasted hydrothermal vent sites (Rainbow/TAG/Logatchev/Ashadze) was analysed and compiled with previous data to evaluate the possible influence of site location, using 16S rRNA surveys and microscopic observations (TEM, SEM and FISH analyses). Filamentous epibionts inserted between the epithelial cells microvilli were observed on all examined samples.... |
| Tipo: Text |
Palavras-chave: Epibiont; Extreme environments; Network analyses; Phylogeography. |
| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00288/39890/38443.pdf |
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| Menot, Lenaick; Van Den Beld, Inge; Arnaud-haond, Sophie; Bourillet, Jean-francois; Davies, J.s.; Guillaumont, Brigitte; Olu, Karine. |
| In the Bay of Biscay, Cold Water Coral (CWC) habitats have been mapped in 24 out of a hundred known submarine canyons. The footprint of ROV or towed-camera transects is small compared to the size of these canyons but still, known CWC habitats totalize a linear of 46 km. The distribution of these habitats, dominated by reef-building scleractinians, antipatharians, alcyonaceans and pennatulids, is however patchy and their median size is small, ranging from 6 to 65 m. While the preservation of these Vulnerable Marine Ecosystems has become essential, all CWC habitats will not be benefit from conservation strategies due to their widespread and patchy distribution. Priorities must thus be defined. Among the criteria for such prioritization, we explore here the... |
| Tipo: Text |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00469/58077/60484.pdf |
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| Registros recuperados: 63 | |
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