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Depth gradient on the resource use of a fish community from a semi-enclosed sea ArchiMer
Giraldo, Carolina; Ernande, Bruno; Cresson, Pierre; Kopp, Dorothee; Cachera, Marie; Travers-trolet, Morgane; Lefebvre, Sebastien.
Depth is one of the environmental variables influencing the structure of marine food webs by directly or indirectly influencing benthic-pelagic coupling and predator-prey relationships. In shallow waters, the high degree of connectivity between pelagic and benthic networks results in complex systems with multiple interactions. Digestive tract (DT) and stable isotope (SI) analyses were used to investigate depth-related changes in feeding patterns for 33 fish species (eastern English Channel [EEC]) collected between 5 m and 80 m depth. Fish species were first arranged into functional groups based upon trophic and habitat similarities. DTs were used to determine the general topology of the food web and SIs were used to estimate the contributions of different...
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Ano: 2017 URL: https://archimer.ifremer.fr/doc/00386/49711/52255.pdf
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FISH : shapes and swimming styles ArchiMer
Cachera, Marie; Ernande, Bruno; Villanueva, Ching-maria; Baheux, Mickael; Lefebvre, Sebastien.
By covering 80% of Earth, the global ocean is the most spread ecosystem in the world. Human activities (pollution, fisheries…) have huge impacts on both oceans and marine life. Despites overfishing and intense maritime transport, many fish species remain in the English Channel. A major challenge in biological research is to comprehend and facilitate the emergence of body shape in fishes for understanding how these organisms may respond and persist in complex and multiple environments with predictable and unpredictable perturbations. Body shape in fish is conditioned by several developmental paths and functions depending on multitude behaviours. Fishes body morphology varies in every species and in some cases had been shown to influence their occurrence,...
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Ano: 2012 URL: http://archimer.ifremer.fr/doc/00161/27217/25416.pdf
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Le risque trophique : caractéristiques trophique et hétérogénéité des ressources alimentaires en lien avec les mortalités ostréicoles ArchiMer
Ropert, Michel; Lefebvre, Sebastien; Soletchnik, Patrick; Blin, J. L.; Faury, Nicole; Struski, Caroline.
The "trophic risk" has been demonstrated in the bioenergetic model developed in vivo and based on various diet conditions similar to those of different types of oyster culture basins (eutrophic, heterotrophic and oligotrophic) [22, 23]. The trophic resource – mortality relationship differs from one basin to another, according to the quantity of this resource. Multy-varied analysis (ACP) conducted on a total of 11 oyster culture sites and handled in a database matching mortality and environmental data, show that the trophic indicator "chlorophyll a" (often coupled with temperature) is involved in a positive correlation with the mortality of both age classes (1 and 2 years old). The stock transfer from the Bay of Veys to the west coast of Cotentin in spring...
Tipo: Text Palavras-chave: MOREST; Crassostrea gigas; Physiologie; Phéopigments; Ressources trophiques; Modèle bioénergétique; Mortalités; Huîtres.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/2004/acte-3410.pdf
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La forme du poisson: Permet-elle de déduire les guildes trophiques ArchiMer
Chambord, Sophie; Villanueva, Ching-maria; Ernande, Bruno; Lefebvre, Sebastien.
Les réseaux trophiques engendrent tous les transferts d’énergies et de matières au sein d’un écosystème, ce qui expliquent l’intérêt de leur compréhension. Ces réseaux dépendent essentiellement des relations proies-prédateurs, il est donc important de connaître les processus les déterminants. La morphométrie peut être un processus déterminants les relations proies-prédateurs. Ces travaux ont permis d’identifier les relations entre les caractéristiques morphologiques des individus et leur régime alimentaire chez deux espèces relativement contrastée en termes de guilde trophique, à savoir Pleuronectes platessa (plie, Linné 1758) et Dicentrarchus labrax (bar commun, Linné 1758).
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00143/25417/23568.pdf
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Modelling the spatial heterogeneity of ecological processes in an intertidal estuarine bay: dynamic interactions between bivalves and phytoplankton ArchiMer
Grangere, Karine; Lefebvre, Sebastien; Bacher, Cedric; Cugier, Philippe; Menesguen, Alain.
Spatial patterns in ecological communities result from a combination of physical and biological factors. In an estuarine intertidal bay, spatial differences have been found in the structure of phytoplanktonic communities and in the biological performance of cultivated oysters. It has been hypothesised that trophic heterogeneity exists, although the mechanisms controlling it remain undefined. Spatial and temporal interactions in the structure of phytoplanktonic biomass and in the biological performance of cultivated oysters were highlighted in this estuarine intertidal bay using a 2-dimensional hydrodynamic model coupled to a nutrient-phytoplankton-zooplankton bivalve food web model. The coupled models allowed a reproduction in space and time of variations...
Tipo: Text Palavras-chave: Spatial heterogeneity; Hydrodynamics; Ecosystem model; Food supply; Bivalves; Dynamic energy budget model; Physiological status; Baie des Veys.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00017/12854/9819.pdf
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Effluents from land based marine farms: nature, treatment, valorisation, modelisation. Applications to fish and shrimp rearing ArchiMer
Hussenot, Jerome; Lefebvre, Sebastien; Martin, Jean-louis.
Fish culture (seabass, turbot...) on the French metropolitan coast, and shrimp culture in the overseas territories (essentially New Caledonia and Tahiti) are subject to a regular development through land based farms. Three thematic of research on aquaculture ponds are carried out in CREMA-L’Houmeau, in collaboration with producers. The aim of the first one is to determine the optimal rearing conditions (stocking density, water renewal rate, input of oxygen, rate of feeding...) which allow to minimise the quantity of wastes for a similar final biomass. The second part aims to reduce the nutrient loading in the effluent, through open-air treatments: sedimentation ponds, foam fractionation, mass production of phytoplankton, and rearing of molluscs on the...
Tipo: Text Palavras-chave: Fish; Shrimp; Pond management; Effluents; Treatment.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00016/12728/9650.pdf
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Shift in benthic assemblages and organisms’ diet at salmon farms: community structure and stable isotope analyses ArchiMer
Callier, Myriam; Lefebvre, Sebastien; Dunagan, Mary K.; Bataille, Marie-paule; Coughlan, Jennifer; Crowe, Tasman P..
The extent of the influence of salmon farming on the environment and on the uptake of particulate and dissolved effluents by benthic organisms was assessed using community structure and stable isotope analyses. Sediment cores were collected in 2 directions: perpendicular and parallel to the main residual current, 0, 25 and 200 m from 2 salmon farms (Millstone and Cranford) located in Mulroy Bay, Ireland. In addition, artificial substrates were placed for 2 mo at 1 m depth 0, 25 and 200 m from one farm to trace the uptake of farm-related nutrients by fouling organisms. The extent of measurable change in benthic communities (abundance, diversity, structure, trophic composition) depended on residual current direction. Intraspecific variation in isotopic...
Tipo: Text Palavras-chave: Aquaculture; Organic matter; Stable isotope; Community structure; Diet shift; Trophic structure.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00144/25481/23634.pdf
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Linking life-history traits, spatial distribution and abundance of two species of lugworms to bait collection: A case study for sustainable management plan ArchiMer
De Cubber, Lola; Lefebvre, Sebastien; Fisseau, Charline; Cornille, Vincent; Gaudron, Sylvie Marylene.
Arenicola spp. are marine benthic polychaetes dug for bait by anglers. Without regulation, this activity can lead to the decrease of lugworms' population meanwhile affecting the physical characteristics of the beach and the biodiversity. Here, we identified through morphology and genetics two species of lugworms, Arenicola marina and A. defodiens, within a Marine Protected Area of the Eastern English Channel (France). For each species, abundance and spatial distribution were assessed using a stratified random sampling and interpolation at four studied sites, as well as some life-history traits. These data were compared to lugworms' collection data to estimate its sustainability and to provide potential management measures. At one site, A. marina was...
Tipo: Text Palavras-chave: Arenicola marina; Arenicola defodiens; Spawning; Population structure; Size at first maturity; Recreational fisheries; Conservation; English channel.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00451/56284/60474.pdf
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Does the positive body-size-trophic level relationship hold at the species level? ArchiMer
Kopp, Dorothee; Lefebvre, Sebastien; Villanueva, Ching-maria; Ernande, Bruno.
The structure, dynamics and productivity of marine ecosystems depend mainly on their underlying food webs. In temperate marine ecosystems, specifically in the English Channel, strong seasonality, habitat diversity and variability in the sources of available organic matters are controlling factors affecting the trophodynamics of these networks. Exploitation through fisheries may also alter these food webs. During the last decade, the study of trophic ecology has greatly benefited from the use of stable isotope analysis (SIA) that integrates diet information over long time periods and complements gut content analysis. Applied in complex ecosystems, such as the English Channel, SIA may help to detect nutrient pathways and trophic links. Stable isotopic...
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00161/27213/25412.pdf
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Modelling the effects of macrofauna on sediment transport and bed elevation: Application over a cross-shore mudflat profile and model validation ArchiMer
Orvain, Francis; Le Hir, Pierre; Sauriau, Pierre-guy; Lefebvre, Sebastien.
Tipo: Text Palavras-chave: Modelling; Sediment dynamics; Erodability; Bioturbation; Macrofauna; Biota; Sediment stability.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00079/19055/18610.pdf
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Trophic ecology of European sardine Sardina pilchardus and European anchovy Engraulis encrasicolus in the Bay of Biscay (north-east Atlantic) inferred from delta C-13 and delta N-15 values of fish and identified mesozooplanktonic organisms ArchiMer
Chouvelon, Tiphaine; Chappuis, A.; Bustamante, Paco; Lefebvre, Sebastien; Mornet, Francoise; Guillou, G.; Violamer, L.; Dupuy, Christine.
European sardine (Sardina pilchardus) and European anchovy (Engraulis encrasicolus) are two species of economical and ecological significance in the Bay of Biscay (north-east Atlantic). However, the trophic ecology of both species is still poorly known in the area, and more generally, few studies have considered the potential trophic overlap between sardines and anchovies worldwide. This study aims to highlight the trophic links between the mesozooplankton and adults of these two pelagic fish in the Bay of Biscay, through carbon and nitrogen stable isotope analysis (SIA). Mesozooplankton and individuals of sardines and anchovies were collected during one season (spring 2010), over spatially contrasted stations within the study area. First, the potential...
Tipo: Text Palavras-chave: Plankton preservation; Plankton delipidation; Pelagic fish; Trophic interactions; Spatial variability; Isotopic mixing model.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00176/28741/27280.pdf
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Storage of Pacific oysters Crassostrea gigas in recirculating tank: ammonia excretion and potential nitrification rates ArchiMer
Buzin, Florence; Dupuy, Beatrice; Lefebvre, Sebastien; Barille, Laurent; Haure, Joel.
In response to the closure of shellfish production sites due to increasing occurrence of toxic algal blooms, land-based recirculating aquaculture systems (RAS) could be used by producers to store a proportion of their stock temporarily. An RAS prototype was tested in this study to store Pacific oyster Crassostrea gigas over a range of temperatures. In such systems, the water temperature is a variable that could influence the bivalve excretion rate of ammonia, the concentration of which may become critical for the water quality. In this study, we first estimated the total ammonia nitrogen (TAN, N-NH4+ + N-NH3) excretion of the Pacific oyster and then investigated whether the bacterial population associated with the oysters could act as a natural biofilter...
Tipo: Text Palavras-chave: Crassostrea gigas; Ammonia excretion; Nitrification rate; Recirculating system; Temperature.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00248/35889/34409.pdf
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Understanding the dynamics of δ13C and δ15N in soft tissues of the bivalve Crassostrea gigas facing environmental fluctuations in the context of Dynamic Energy Budgets (DEB) ArchiMer
Emmery, Antoine; Lefebvre, Sebastien; Alunno-bruscia, Marianne; Kooijman, S. A. L. M..
We studied the dynamics of stable isotopes δ13C and δ15N of an opportunistic suspension feeder the Pacific oyster (Crassostrea gigas) to better understand the factors that influence the trophic enrichment (trophic-shift, Δ) between primary producers and consumers. Most of the previous studies on this topic do not quantify mass fluxes or isotopic discrimination phenomena in the organism, which are two pillars in isotope ecology. We used a dynamic energy budget (DEB) approach (Kooijman, 2010) to quantify i) the fluxes of elements and isotopes in C. gigas soft tissues and ii) the impact of the scaled feeding level, the organism mass and the isotopic ratio of food on the "trophic-shift" Δ, and isotope turnover in tissues. Calibration and parametrization...
Tipo: Text Palavras-chave: Oyster; Isotopic ratio; Discrimination; Trophic-shift; Diet; DEB theory.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00043/15434/12784.pdf
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Conception et réalisation de bancs automatisés pour les mesures écophysiologiques des mollusques filtreurs en condition contrôlée à La Station Expérimentale d'Argenton ArchiMer
Fagon, N.; Le Souchu, Pierrick; Lefebvre, Sebastien; Pouvreau, Stephane.
Force est de constater que, malgré un intérêt croissant depuis les 20 dernières années en matière d'écophysiologie des mollusques, il n'existe, à notre connaissance, aucun système réellement adapté à la mesure en continu et de façon concomitante des principales fonctions écophysiologies des mollusques filtreurs (notamment consommation et filtration). Faisant suite à la réalisation d'un cahier des charges et d'une version préliminaire d'un système, le but du présent projet est de doter la Station Expérimentale d'Argenton (entité expérimentale de l'UMR « Physiologie et Ecophysiologie des Mollusques Marins) de deux systèmes automatisés et opérationnels de mesures de l'écophysiologie des mollusques filtreurs. Après un bref rappel des principes de mesures des...
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Ano: 2000 URL: http://archimer.ifremer.fr/doc/00306/41769/40982.pdf
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Spatial and temporal interaction between sediment and microphytobenthos in a temperate estuarine macro-intertidal bay ArchiMer
Orvain, Francis; Lefebvre, Sebastien; Montepini, J.; Sebire, M.; Gangnery, Aline; Sylvand, B..
Intertidal flats of the estuarine macro-intertidal Baie des Veys (France) were investigated to identify spatial features of sediment and microphytobenthos (MPB) in April 2003. Gradients occurred within the domain, and patches were identified close to vegetated areas or within the oyster-farming areas where calm physical conditions and biodeposition altered the sediment and MPB landscapes. Spatial patterns of chl a content were explained primarily by the influence of sediment features, while bed elevation and compaction brought only minor insights into MPB distribution regulation. The smaller size of MPB patches compared to silt patches revealed the interplay between physical structure defining the sediment landscape, the biotic patches that they contain,...
Tipo: Text Palavras-chave: Benthic diatoms; Benthos; Coastal ecosystems; Intertidal flats; Baie des Veys; Normandie; Spatial pattern; Geostatistics; Kriging.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00088/19945/17598.pdf
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Underestimation of chemical contamination in marine fish muscle tissue can be reduced by considering variable wet:dry weight ratios ArchiMer
Cresson, Pierre; Travers-trolet, Morgane; Rouquette, Manuel; Timmerman, Charles-andre; Giraldo, Carolina; Lefebvre, Sebastien; Ernande, Bruno.
Whether considered as a risk for human health or as ecological tracers, contaminants' concentrations measured in fish muscles are commonly expressed relative to wet or dry mass. Comparison of results required conversion factors (CF) but accurate values are scarce and case-specific. The present paper is aimed at investigating errors linked with the use of the theoretical value. Muscles dry and wet masses were measured in 15 fish species to determine the actual CF. Most CF were lower than the theoretical wet:dry ratio of 5 classically used, with variations at individual and species level. Muscle lipid content (inferred by C/N ratios) was a crucial factor explaining discrepancies, claiming for caution when working with lipid-rich species. The observed...
Tipo: Text Palavras-chave: Wet:dry ratio; Conversion factor; Contaminant concentration; Marine fish; Percentage of humidity.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00396/50736/51456.pdf
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Reorganization of a marine trophic network along an inshore-offshore gradient due to stronger pelagic-benthic coupling in coastal areas ArchiMer
Kopp, Dorothee; Lefebvre, Sebastien; Cachera, Marie; Villanueva, Maria Ching; Ernande, Bruno.
Recent theoretical considerations have highlighted the importance of the pelagic-benthic coupling in marine food webs. In continental shelf seas, it was hypothesized that the trophic network structure may change along an inshore-offshore gradient due to weakening of the pelagic-benthic coupling from coastal to offshore areas. We tested this assumption empirically using the eastern English Channel (EEC) as a case study. We sampled organisms from particulate organic matter to predatory fishes and used baseline-corrected carbon and nitrogen stable isotope ratios (δ13C and δ15N) to determine their trophic position. First, hierarchical clustering on δ13C and δ15N coupled to bootstrapping and estimates of the relative contribution of pelagic and benthic carbon...
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Ano: 2015 URL: https://archimer.ifremer.fr/doc/00226/33765/32191.pdf
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Spatial Variability of Benthic-Pelagic Coupling in an Estuary Ecosystem: Consequences for Microphytobenthos Resuspension Phenomenon ArchiMer
Ubertini, Martin; Lefebvre, Sebastien; Gangnery, Aline; Grangere, Karine; Le Gendre, Romain; Orvain, Francis.
The high degree of physical factors in intertidal estuarine ecosystem increases material processing between benthic and pelagic compartments. In these ecosystems, microphytobenthos resuspension is a major phenomenon since its contribution to higher trophic levels can be highly significant. Understanding the sediment and associated microphytobenthos resuspension and its fate in the water column is indispensable for measuring the food available to benthic and pelagic food webs. To identify and hierarchize the physical/biological factors potentially involved in MPB resuspension, the entire intertidal area and surrounding water column of an estuarine ecosystem, the Bay des Veys, was sampled during ebb tide. A wide range of physical parameters (hydrodynamic...
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Ano: 2012 URL: http://archimer.ifremer.fr/doc/00090/20126/17775.pdf
Registros recuperados: 38
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