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| Registros recuperados: 67 | |
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| Fischer Le Saux, Marion; Hervio Heath, Dominique; Loaec, Solen; Colwell, Rita; Pommepuy, Monique. |
| The objective of this study was to develop a molecular detection method that better estimates the potential risk associated with the presence of Vibrio vulnificus. For that purpose, we applied seminested reverse transcription-PCR (RT-PCR) to viable but nonculturable (VBNC) populations of V. vulnificus and targeted the cytotoxin-hemolysin virulence gene vvhA. Three strains, two environmental, IF Vv10 and IF Vv18, and one clinical, C7184, were used in this study. Artificial seawater, inoculated with mid-log-phase cells, was maintained at 4degreesC. VBNC cells resulted after 3, 6, and 14 days for C7184, IF Vv18, and IF Vv10, respectively. Our data indicate that seminested RT-PCR is sensitive for the detection of vvhA mRNA in artificial seawater when... |
| Tipo: Text |
Palavras-chave: Artificial seawater; Reverse transcription PCR; Cytotoxin Hemolysin; Molecular detection method; Vibrio vulnificus. |
| Ano: 2002 |
URL: https://archimer.ifremer.fr/doc/2002/publication-1269.pdf |
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| Le Saux, Jean-claude; Hervio Heath, Dominique; Pommepuy, Monique; Le Guyader, Soizick. |
| En 2006, le nombre d'informations recensées par Ifremer, relatives aux toxi-infections alimentaires collectives (TIAC) liées à la consommation de coquillages vivants en France a triplé par rapport aux années précédentes, avec 45 foyers suspectés ou confirmés pour environ 400 cas estimés. Pendant cette même période, les alertes européennes sont restées au même niveau que les années antérieures avec 22 notifications communautaires. Majoritairement, ces TIAC ont été déclarées au cours du premier trimestre de l'année avec comme vecteur alimentaire incriminé principalement les huîtres et comme agent causal suspecté ou identifié les norovirus et un virus émergent, le virus Aichi. Sur l'ensemble de ces TIAC, seul un nombre très limité d'entre elles a pu faire... |
| Tipo: Text |
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| Ano: 2007 |
URL: http://archimer.ifremer.fr/doc/00306/41708/40919.pdf |
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| Le Guyader, Soizick; Haugarreau, Larissa; Miossec, Laurence; Dubois, Eric; Pommepuy, Monique. |
| The main pathogenic enteric viruses able to persist in the environment, such as hepatitis A virus (HAV), Norwalk-like virus (NLV), enterovirus (EV), rotavirus (RV), and astrovirus (AV), were detected by reverse transcription-PCR and hybridization in shellfish during a 3-year study. Oyster samples (n = 108), occasionally containing bacteria, were less frequently contaminated, showing positivity for AV (17%), NLV (23%), EV (19%), and RV (27%), whereas mussel samples, collected in areas routinely impacted by human sewage, were more highly contaminated: AV (50%), HAV (13%), NLV (35%), EV (45%), and RV (52%). Sequences obtained from HAV and NLV amplicons shelved a great variety of strains, especially for NLV (strains close to Mexico, Snow Mountain Agent, or... |
| Tipo: Text |
Palavras-chave: Molecular technique; Seasonal variation; Human pathology; Viral contamination; Shellfish; Enteric virus. |
| Ano: 2000 |
URL: http://archimer.ifremer.fr/doc/2000/publication-1363.pdf |
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| Pommepuy, Monique. |
| Le devenir des bactéries entériques rejetées en mer a été étudié sur cinq zones côtières du littoral français : la côte Ouest du Cotentin, la rade de Brest, l'estuaire de Morlaix, la rade de Toulon et la Baie de Fort de France. Sur chaque site, une étude a permis de déterminer les concentrations en coli formes thermotolérants et en streptocoques fécaux dans les principaux apports. Les salmonelles ont également été recherchées sur trois de ces secteurs. Un calcul de flux permet d'apprécier l'importance des rejets urbains. Dans ces eaux généralement très chargées en contamination fécale, la présence de salmonelles a presque toujours été détectée. La qualité des eaux littorales et des sédiments côtiers a ensuite fait l'objet d'observations. Les... |
| Tipo: Text |
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| Ano: 1995 |
URL: http://archimer.ifremer.fr/doc/00052/16319/13822.pdf |
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| Riou, Philippe; Le Saux, Jean-claude; Dumas, Franck; Le Guyader, Soizick; Le Goff, R.; Maheux, Frank; Lamort, Laure; Pommepuy, Monique. |
| Climate change contributes to local weather modifications such as storm events and heavy rainfall, and in particular, changes in the frequency and intensity of extreme storm and rainfall events. Observations have indicated that rainfall-runoff processes, like sewage overflow may induce fecal contamination in coastal water. Pathogens present in runoff water could therefore contaminate shellfish and be responsible for food-borne disease outbreaks. Mathematical models for this were used to predict the effect of climate modifications on shellfish quality. Using a hydrodynamic model, simulations of water quality conditions under a variety of storm event scenarios were run and are presented here for a harvesting area in France. Major storm events occurring in... |
| Tipo: Text |
Palavras-chave: Modeling; Seawater fecal contamination; E. coli; Virus; Shellfish; Climate change. |
| Ano: 2008 |
URL: http://archimer.ifremer.fr/doc/00066/17739/15261.pdf |
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| Miossec, Laurence; Besseau, Laetitia; Haugarreau, Larissa; Le Guyader, Francoise; Menard, Dominique; Pommepuy, Monique; Abadie, Eric; Comps, Marie-annick; Guillou, Jean-louis; Le Bec, Claude; Sauvagnargues, Jean-claude; Bon, Fabienne; Jamot, B.; Kohli E, Evelyne; Potier, P.; Daurat, G.; Guyonnet, J.p.. |
| Les microorganismes, bactéries et virus d'origine entérique, sont abondants dans les rejets urbains. Si la charge bactériologique contenue dans les eaux usées est notablement réduite lors des traitements appliqués dans les stations d'épurations, de nombreux microorganismes persistent et sont rejetés avec les eaux épurées dans le milieu récepteur, en rivière ou directement en mer. Le développement de méthodes analytiques basées sur la biologie moléculaire a permis récemment la détection de virus entériques non cultivables dans les échantillons de l'environnement, tels que les entérovirus, le virus de l'hépatite A, les calicivirus, les astrovirus et les rotavirus. En France, les données publiées sur la présence de ces virus entériques, détectés par RTPCR,... |
| Tipo: Text |
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| Ano: 1999 |
URL: http://archimer.ifremer.fr/doc/00044/15552/12941.pdf |
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| Bon, Fabienne; Ambert Balay, K; Giraudon, H; Kaplon, J; Le Guyader, Soizick; Pommepuy, Monique; Gallay, A; Vaillant, V; De Valk, H; Chikhi Brachet, R; Flahaut, A; Pothier, P; Kohli, E. |
| We compiled sequence and epidemiological data from 172 caliciviruses detected in France from December 1998 to February 2004 in sporadic and outbreak cases. The results showed a cocirculation of strains with a majority of genogroup II (GII) noroviruses. Three groups of noroviruses, not detected before in our laboratory, emerged and spread during the period: the recombinant GGIIb and Norwalk-related strains not amplified in the polymerase gene in 2000 and a new Lordsdale variant in 2002. We observed that (I) GII4 noroviruses were predominant in nursing home and hospital outbreaks but rare in oyster- and water-related outbreaks despite continuous circulation in the population; (ii) at the opposite, genogroup I strains were detected in the majority of... |
| Tipo: Text |
Palavras-chave: Genogroup; Cocirculation; Gastroenteritis; Caliciviruses; Epidemiological. |
| Ano: 2005 |
URL: http://archimer.ifremer.fr/doc/2005/publication-723.pdf |
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| Pommepuy, Monique; Le Guyader, F.s; Le Pendu, Jacques; Poncet, D; Thebault, Anne; Le Saux, Jean-claude. |
| L'objectif général du projet est de comprendre le rôle du milieu marin, et en particulier des coquillages, sur la sélection des souches de norovirus humaines ou animales et sur leur pathogénicité potentielle pour l'homme. Des évènements récents ont montré l 'importance du potentiel zoonotique des virus, par voie directe, mais aussi au travers d'aliments potentiellement infectés ou contaminés [Yazaki et al., 2003] 1; [Stavrinides et Guttman, 2004]. L'analyse de l'évolution des Caliciviridae montre ainsi que le virus de l'exanthème vésiculeux du porc (VESV) serait apparu via l'alimentation contenant des farines de poissons jnfectés [Etherington et al. , 2006]. L'émergence de pathogènes au travers d'un passage inter - espèce correspond à des évènements rares,... |
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| Ano: 2010 |
URL: http://archimer.ifremer.fr/doc/00044/15550/12937.pdf |
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| Alzieu, Claude; Abarnou, Alain; Bassoullet, Philippe; Boutier, Bernard; Chiffoleau, Jean-francois; Crenn, Isabelle; Derrien, Annick; Erard-le Denn, Evelyne; Gourmelon, Michele; Guiliaud, Jean-françois; Silva Jacinto, Ricardo; Le Cann, Pierre; Le Guyader, Françoise; Le Hir, Pierre; L'Yavanc, Jacky; Mauvais, Jean-louis; Menard, Dominique; Michel, Pierre; Monbet, Yves; Pommepuy, Monique; Quiniou, Francoise. |
| Port activities require continuous or occasional dredging of considerable quantities of sediments : approximately 50 million m3 along the French coastline. A large proportion of the dredgings is authorized for dumping at sea in geographically delimited areas and following an impact evaluation of their potential harmfulness to the marine environment. The environmental risks assessment linked to dredging operations relies on knowledge related to several scientific disciplines contributing to changes in the regulations. This work, intended both for managers and for environmental scientists and engineers, is designed to take stock of the current state-of-the-art in the field of sediment contamination and related ecotoxicological hazards, along with a review of... |
| Tipo: Text |
Palavras-chave: Regulations; Management; Impact; Contaminants; Dredging; Réglementation; Gestion; Impact; Contaminants; Dragages. |
| Ano: 1999 |
URL: http://archimer.ifremer.fr/doc/1999/rapport-1040.pdf |
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| Le Saux, Jean-claude; Derolez, Valerie; Brest, G.; Le Guyader, Soizick; Pommepuy, Monique. |
| For shellfish, the viral contamination clearly occurs in the first step of the process i.e. in growing and harvesting areas. As opposed to other foods, there is no proof that other routes (foodhandlers, aerosol), could be at the origin of the seafood contamination (Koopmans & Duizer, 2004). Most of the time, untreated sewage are at the origin of the presence of viruses in shellfish. However, direct contamination by ill people working in the growing area, has also been reported (Berg et al., 2000; Butt et al, 2004). |
| Tipo: Text |
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| Ano: 2004 |
URL: http://archimer.ifremer.fr/doc/00066/17733/15254.pdf |
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| Mieszkin, Sophie; Furet, Jean-pierre; Corthier, Gerard; Pommepuy, Monique; Le Saux, Jean-claude; Bougeard, Morgane; Hervio Heath, Dominique; Gourmelon, Michele. |
| The microbiological quality of coastal waters and shellfish harvesting areas in Brittany (France) can be affected by faecal pollutions from human activities and animal breeding (especially pigs and cattle). To discriminate among faecal pollution of human and animal origin, a library-independent microbial source tracking method was selected: Bacteroidales host-specific 16S rRNA gene markers by real-time Polymerase Chain Reaction (PCR). A human-specific Bacteroidales marker (Hum-1-Bac) was designed. Tested on faecal samples, the Hum-1-Bac marker showed 95 % sensitivity and 95 % specificity (n= 80). Average values (± STD) of the Hum-1-Bac marker were found to be 7.3 ± 1.4 16S rRNA gene copies per g wet faeces in human faeces samples (n=10) and 5.7 ± 1.3 log10... |
| Tipo: Text |
Palavras-chave: Microbial Source Tracking; Host-Specific Bacteroidales Marker; 16S rRNA Gene; Real-Time PCR; Faecal Contamination. |
| Ano: 2009 |
URL: http://archimer.ifremer.fr/doc/00021/13259/10306.pdf |
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| Pommepuy, Monique; Caprais, Marie-paule; Le Mennec, Cecile; Parnaudeau, Sylvain; Le Guyader, Francoise; Camus, Patrick; Dimeet, Joel; Treguier, Cathy; Bon, Fabienne; Pothier, Pierre; Kohli E, Evelyne; Brachet, R.; Flahault, A.; Sarrette, B.; Vilagines, P.. |
| Le développement des activités humaines dans les régions littorales entraîne le rejet de germes pathogènes d'origine fécale dans l'environnement estuarien et marin. L'amélioration des traitements d'épuration, mais aussi la mise en place de normes bactériologiques pour surveiller les zones de production conchylicole, ont entraîné une diminution des épidémies liées à la consommation de coquillages. Ainsi, à l'heure actuelle, même si l'origine de ces gastro-entérites n'est pas élucidée dans sa globalité (rôle probable des vibrios ou d'autres bactéries), les virus semblent jouer un rôle important et leur implication té clairement établie dans les phénomènes épidémiques (Miossec et Vaillant, 2001) Les principaux virus humains susceptibles d'être détectés dans... |
| Tipo: Text |
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| Ano: 2002 |
URL: http://archimer.ifremer.fr/doc/00044/15549/12936.pdf |
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| Pommepuy, Monique. |
| INTRODUCTION Problématique générale Les zones marines côtières reçoivent des rejets d'eaux urbaines et agricoles qui contiennent de grandes quantités de micro-organismes dont certains sont pathogènes pour l'homme (par ex. virus de l'hépatite A. ..). Dans les environnements hostiles, la dispersion et conditions de survie défavorables (énergies lumineuse importante, eau oligotrophe...) font que les bactéries disparaissent rapidement ou évoluent vers un état non cultivable. Par contre, certains milieux comme les sédiments, les eaux turbides ou eutrophisées, présentent des conditions favorables à la survie des bactéries d'origine entérique et à la protection physique des particules virales. Dans les écosystèmes perturbés de nombreux apports anthropiques, la... |
| Tipo: Text |
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| Ano: 1995 |
URL: http://archimer.ifremer.fr/doc/00040/15117/12453.pdf |
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| Le Guyader, Soizick; Parnaudeau, Sylvain; Schaeffer, Julien; Bosch, Albert; Loisy, Fabienne; Pommepuy, Monique; Atmar, Robert L.. |
| Noroviruses (NoVs) are the most common viral agents of acute gastroenteritis in humans, and high concentrations of NoVs are discharged into the environment. As these viruses are very resistant to inactivation, the sanitary consequences are contamination of food, including molluscan shellfish. There are four major problems with NoV detection in shellfish samples: low levels of virus contamination, the difficulty of efficient virus extraction, the presence of interfering substances that inhibit molecular detection, and NoV genetic variability. The aims of this study were to adapt a kit for use with a method previously shown to be efficient for detection of NoV in shellfish and to use a one step real-time reverse transcription-PCR method with addition of an... |
| Tipo: Text |
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| Ano: 2009 |
URL: http://archimer.ifremer.fr/doc/2009/publication-6137.pdf |
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| Le Guyader, Soizick; Loisy, Fabienne; Atmar, R; Hutson, A; Estes, M; Ruvoen-clouet, N; Pommepuy, Monique; Le Pendu, J. |
| The primary pathogens related to shellfishborne gastroenteritis outbreaks are noroviruses. These viruses show persistence in oysters, which suggests an active mechanism of virus concentration. We investigated whether Norwalk virus or viruslike particles bind specifically to oyster tissues after bioaccumulation or addition to tissue sections. Since noroviruses attach to carbohydrates of the histo-blood group family, tests using immunohistochemical analysis were performed to evaluate specific binding of virus or viruslike particles to oyster tissues through these ligands. Viral particles bind specifically to digestive ducts (midgut, main and secondary ducts, and tubules) by carbohydrate structures with a terminal N-acetylgalactosamine residue in an alpha... |
| Tipo: Text |
Palavras-chave: Bioaccumulation; Shellfish; Escherichia coli; Pathogen; Oyster digestive tissue; Noroviruses. |
| Ano: 2006 |
URL: http://archimer.ifremer.fr/doc/2006/publication-1542.pdf |
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| Gantzer, Christophe; Dubois, Éric; Crance, Jean-marc; Billaudel, Sylviane; Kopecka, Helena; Schwartzbrod, Louis; Pommepuy, Monique; Le Guyader, Françoise. |
| To improve the knowledge of the survival of enteric viruses in a marine environment, the influence of physico-chemical parameters (temperature, UV, salinity) on the survival of infectious poliovirus 1 and hepatitis A Virus (HAV) in seawater was first studied, the influence of suspended solids (SS) on poliovirus adsorption and survival in seawater was then evaluated and the detection of rotavirus genome in environmental samples (shellfish, river water, treated wastewater) was finally investigated. The results show that temperature has a major impact on virus survival in seawater as the time necessary to inactivate 90 % of the virus (T-90) is 671 days at 4 degrees C and only 25 days at 25 degrees C. Ultraviolet light (42 mW s cm(-2)) rapidly inactivates... |
| Tipo: Text |
Palavras-chave: Environmental factors; Survival; Seawater; Enteric viruses; Facteurs environnementaux; Survie; Eau de mer; Virus entériques. |
| Ano: 1998 |
URL: http://archimer.ifremer.fr/doc/1998/publication-846.pdf |
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| Le Guyader, Soizick; Le Saux, Jean-claude; Ambert-balay, Katia; Krol, Joanna; Serais, Ophelie; Parnaudeau, Sylvain; Giraudon, Helene; Delmas, Gilles; Pommepuy, Monique; Pothier, Pierre; Atmar, Robert L.. |
| Following a flooding event close to a shellfish production lagoon, 205 cases of gastroenteritis were linked to oyster consumption. Twelve stool samples from different individuals were collected. Analysis showed that eight samples were positive for multiple enteric viruses, and one stool sample had seven different enteric viruses. Analysis of shellfish implicated in the outbreak allowed detection of the same diversity of enteric viruses, with some viral genomic sequences being identical to those obtained from stool sample analysis. Shellfish were contaminated by as many as five different enteric viruses. For the first time in Europe, Aichi virus was identified in oyster samples. Shellfish samples collected over 3 weeks following the outbreak showed a... |
| Tipo: Text |
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| Ano: 2008 |
URL: http://archimer.ifremer.fr/doc/2008/publication-6099.pdf |
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| Breton, Marguerite; Caprais, Marie-paule; Derrien, A.; Douillet, P; Dubois, E; Dupray, E; Gourmelon, Michele; Guillerm, Denise; Kempf, Marc; Lazure, P.; Le Guyader, Soizick; Le Menn, Remi; Menard, Dominique; Pommepuy, Monique; Salomon, Jean-claude. |
| Les départements et territoires d'outre mer sont généralement l'objet d'enjeux économiques importants, et de conflits d'activités liés au développement touristique, aquacole, agricole et industriel. Les études font généralement état d'une lente dégradation de l'environnement marin avec diminution des coraux et de la faune associée, au profit d'une augmentation de la couverture algale. On constate parfois un envasement ou un ensablement des sites, la présence dans l'eau de polluants organiques, dont des pesticides, des métaux ainsi que des microorganismes d'origine fécale. En Martinique, ce dernier aspect, lié à l'assainissement des zones rurales, urbaines et touristiques est actuellement considéré comme une préoccupation majeure pour les prochaines années.... |
| Tipo: Text |
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| Ano: 1994 |
URL: http://archimer.ifremer.fr/doc/00132/24303/22301.pdf |
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| Registros recuperados: 67 | |
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