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Rain-derived particles and CDOM distribution along the East Coast of New Caledonia ArchiMer
Dupouy, Cecile; Wattelez, Guillaume; Lefevre, Jerome; Juillot, Farid; Andreoli, Remi; Lille, Didier; Murakami, Hiroshi; Roettgers, Rudiger; Frouin, Robert.
Shortly after strong rains or tropical storms, chlorophyll-a concentration (Chla), turbidity, and colored dissolved organic matter (CDOM) in the lagoon of New Caledonia may be tripled. This effect is visible as far as 50 km offshore. The Eastern Coast of New Caledonia is more impacted than the Western Coast because of its geomorphological structure. Higher frequency and intensity of the rains, and the dominance of highly erosive lateritic formations resulted from deep weathering of ultramafic rocks. At the deeper parts of the lagoon (> 20 m), increases of Chla, turbidity, and CDOM absorption can be detected by satellite imagery with their plumes extending off shore as a result of wind-driven circulation in the lagoon. Such -increases agree with the...
Tipo: Text Palavras-chave: Minerals; Phytoplankton; CDOM; FDOM; Ocean color; Reflectance; New Caledonia; Tropical Pacific Ocean; Lagoons.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00481/59308/62064.pdf
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Production and consumption of B group vitamins in situ. ArchiMer
Kurata, A.
The changes in concentration of thiamine, biotin and vitamin B sub(12) in water of the soaked bottles for 6 h in situ in the north basin of Lake Biwa were examined successively over 30 hours. The concentrations of the vitamins changed comparatively during 6 h. soaking in situ. Generally, the concentrations of thiamine, biotin and vitamin B sub(12) were in high levels in the morning and in low levels in evening both in the soaked bottles and in the surrounding water. The fluctuation ranges in concentration of vitamins in a 5 m deep layer were greater than those in thermocline. From the data obtained with the soaked bottles in situ, it was supposed that the decrease of vitamins in concentration during the daytime surpass consumption of vitamins by...
Tipo: Text Palavras-chave: Phytoplankton; Microorganisms; Bacteria; Metabolism; Biological production; Vitamin B; Fresh water.
Ano: 1984 URL: http://archimer.ifremer.fr/doc/1984/acte-958.pdf
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Phytoplancton des zones myticoles de la baie de Vilaine et intoxication par les coquillages. ArchiMer
Andresen Leitao, Maria Da Paz; Lassus, Patrick; Maggi, Pierre; Le Baut, Claire; Chauvin, Jacky; Truouet, Philippe.
Following 1978 and 1981 human poisoning by mussels in Vilaine Bay (France) a survey of potentially toxic dinoflagellates was conducted in that area in 1982. At the same time paralytic shellfish poison (PSP) analyses were made, the authors studied the dinoflagellates encountered in the intestinal guts of mussels from January to August 1982. Results failed to demonstrate an occurrence of PSP producing species, either by toxicological analysis or dinoflagellate persistency in the mussel guts.
Tipo: Text Palavras-chave: Mytilus edulis; Bivalvia; Marine mollusks; Stomach content; Toxicity; Phytoplankton; Biological poisons; Mussel culture.
Ano: 1982 URL: http://archimer.ifremer.fr/doc/1982/publication-1853.pdf
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Temporal changes in the phytoplankton community along the French coast of the eastern English Channel and the southern Bight of the North Sea ArchiMer
Hernandez- Farinas, Tania; Soudant, Dominique; Barille, Laurent; Belin, Catherine; Lefebvre, Alain; Bacher, Cedric.
Long-term trends in the phytoplankton community along the French coast of the English Channel and southern Bight of the North Sea were studied and related to physico-chemical factors and large-climatic indices. Phytoplankton and hydrological data were acquired through three transects. Sampling took place between 1992 and 2011 as part of the French Phytoplankton Monitoring Network (REPHY) and the Regional Nutrients Monitoring Network (SRN). Trends in time-series were identified with dynamic linear models tailored to environmental monitoring data characteristics (e.g. irregular sampling frequency, missing data). Temporal and spatial patterns in the phytoplankton community were explained with a partial triadic analysis. Relationships between the phytoplankton...
Tipo: Text Palavras-chave: Climatic indicators; Dynamic linear model; Environmental drivers; Multivariate analysis; Phytoplankton.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00195/30619/32177.pdf
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Résultats de la mise en oeuvre des réseaux REPHY et SRN – Zones côtières de la Manche orientale et de la baie sud de la Mer du Nord – Bilan de l’année 2016. ArchiMer
Lefebvre, Alain; Ambiaud, Antonin.
The coastal zone of the Nord – Pas de Calais / Picardie showed dysfonctioning patterns of the ecosystem considered to be link to human activities along shores. These results in regular massive development of species, such as the phytoplanktonic seaweed, Phaeocystis sp. which life cycle was partly linked to nutrients availability and consequently to anthropogenic inputs. As part of the evaluation of the influence of continental inputs on the marine environment (nitrates, phosphates,…) and on potential eutrophication processes, of the estimation of the efficiency of the sewage treatments plants in the possible elimination of dumpings and in order to establish a long-term survey to follow up the change in coastal waters quality, the regional nutrients...
Tipo: Text Palavras-chave: Manche Orientale; Baie sud de la Mer du Nord; Hydrologie; Phytoplancton; Phaeocystis globosa; Eastern English Channel – southern bight of the North Sea; Hydrology; Phytoplankton; Phaeocystis globosa.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00396/50746/51459.pdf
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Dynamics of particulate organic matter delta N-15 and delta C-13 during spring phytoplankton blooms in a macrotidal ecosystem (Bay of Seine, France) ArchiMer
Savoye, N; Aminot, Alain; Treguer, Paul; Fontugne, M; Naulet, N; Kerouel, Roger.
Two cruises (April and June 1997) were carried out in the Bay of Seine, a nitrate- and ammonium-enriched ecosystem of Western Europe, to identify the major mechanisms that control delta(15)N and VC in spring particulate organic matter (POM). Particulate organic nitrogen (PON) delta(15)N ranged between 0.8 and 5.2parts per thousand in April and between 2.2 and 6.2parts per thousand in June, while particulate organic carbon (POC) delta(13)C ranged between -24.3 and -19.7parts per thousand, and between -20.0 and -16.2parts per thousand during the same periods. During spring 1997, POM was highly dominated by autochthonous phytoplankton. It is shown that the variation of PON delta(15)N is due to both nitrate mixing between river and marine waters and...
Tipo: Text Palavras-chave: C and N stable isotopes; Phytoplankton; Coastal ecosystem; Nitrate utilization; Bay of Seine.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/00000/10645/7593.pdf
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Evaluation de la qualité des eaux littorales de la France métropolitaine pour l'élément de qualité Phytoplancton dans le cadre de la DCE. Etat des lieux des règles d’évaluation, et résultats pour la période 2007‐2012. Tome 1 ‐ Etat des lieux, méthodes et synthèse des résultats ArchiMer
Belin, Catherine; Lamoureux, Alice; Soudant, Dominique.
Ce rapport en deux tomes détaille les résultats de l’évaluation, avec les règles de la DCE (Directive Cadre sur l’Eau), de l’élément de qualité phytoplancton dans les masses d’eau de la France métropolitaine. Cette évaluation est réalisée à partir des données acquises sur la période 2007-2012. Le tome 1 contient également un état des lieux des grilles d’évaluation de l’indicateur phytoplancton qui sont applicables en 2014 pour les eaux littorales, et replace cette évaluation dans son contexte réglementaire, en rappelant les exigences de la DCE pour l’élément de qualité phytoplancton, et en donnant des informations sur l'historique et l’avancement des travaux d’inter-calibration et l’état des décisions au niveau européen. Il fait le point sur l’avancement...
Tipo: Text Palavras-chave: DCE; Phytoplancton; Évaluation qualité; Masses d’eau; Métriques d’évaluation; Grilles d’évaluation; Valeurs de référence; WFD; Phytoplankton; Quality assessment; Water bodies; Evaluation metrics; Evaluation grids; Reference values.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00394/50490/51227.pdf
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Application of a digital pattern recognition system to Dinophysis acuminata and D-sacculus complexes ArchiMer
Truquet, Philippe; Lassus, Patrick; Honsell, Giorgio; Le Dean, Loic.
An image discrimination technique was developed to improve specific identification of some toxic Dinophysis cells (marine dinoflagellates involved in diarrhoeic shellfish poisoning), especially the ''acuminata'' and ''sacculus'' groups, which can be present at different ratios in natural sea-water samples collected during toxic episodes. This work was performed with image analysis software SAMBA (TITN Alcatel) using preserved cells directly observed through an inverted microscope and recorded with a video camera before further processing. All morphometric parameters used for discrimination of 7 different species or morphotypes of Dinophysis were tested with discriminant analysis. This study indicates that Dinophysis sp. and D. pavillardi seem well...
Tipo: Text Palavras-chave: Dinophysis sp.; Analyse d'image; Taxonomie; Phytoplancton; Dinophysis sp; Image analysis; Taxonomy; Phytoplankton.
Ano: 1996 URL: http://archimer.ifremer.fr/doc/00188/29890/28337.pdf
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Algal toxin profiles in Nigerian coastal waters (Gulf of Guinea) using passive sampling and liquid chromatography coupled to mass spectrometry ArchiMer
Zendong, Suzie Zita; Kadiri, Medina; Herrenknecht, Christine; Nezan, Elisabeth; Mazzeo, Antonia; Hess, Philipp.
Algal toxins may accumulate in fish and shellfish and thus cause poisoning in consumers of seafood. Such toxins and the algae producing them are regularly surveyed in many countries, including Europe, North America, Japan and others. However, very little is known regards the occurrence of such algae and their toxins in most African countries. This paper reports on a survey of phytoplankton and algal toxins in Nigerian coastal waters. Seawater samples were obtained from four sites for phytoplankton identification, on three occasions between the middle of October 2014 and the end of February 2015 (Bar Beach and Lekki in Lagos State, Port Harcourt in Rivers State and Uyo in Akwa Ibom State). The phytoplankton community was generally dominated by diatoms and...
Tipo: Text Palavras-chave: Dinoflagellates; Dinophysis; Phycotoxins; Untargeted analysis; Phytoplankton.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00314/42521/41893.pdf
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Similar patterns of patterns of community organization characterize distinct groups of different trophic levels in the plankton of the NW Mediterranean Sea ArchiMer
Raybaud, V.; Tunin-ley, A.; Ritchie, M. E.; Dolan, J. R..
Planktonic populations were sampled over a 4 week period in the NW Mediterranean, at a site subject to little vertical advection during the Dynaproc 2 cruise in 2004. The characteristics of the phytoplankton, the tintinnid community and the zooplankton have recently been described in detail. Based on these studies, we compared the characteristics of 3 well-circumscribed assemblages of different trophic levels: Ceratium of the phytoplankton, herbivorous tintinnids of the microzooplankton, and large (> 500 mu m) omnivorous and carnivorous copepods of the metazoan zooplankton. In all three groups, diversity as H' or species richness, was less variable than concentration of organisms. Plotting time against species accumulation, the curves approached plateau...
Tipo: Text Palavras-chave: Species abundance distributions; Diversity; Zooplankton; Microzooplankton; Phytoplankton; Biodiversity.
Ano: 2009 URL: https://archimer.ifremer.fr/doc/00208/31970/30411.pdf
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Phytoplankton Diversity in the Mediterranean Sea From Satellite Data Using Self-Organizing Maps ArchiMer
El Hourany, Roy; Abboud-abi Saab, Marie; Faour, Ghaleb; Mejia, Carlos; Crepon, Michel; Thiria, Sylvie.
We present a new method to identify phytoplankton functional types (PFTs) in the Mediterranean Sea from ocean color data (GlobColour data in the present study) and AVHRR sea surface temperature. The principle of the method is constituted by two very fine clustering algorithms, one mapping the relationship between the satellite data and the pigments and the other between the pigments and the PFTs. The clustering algorithms are constituted of two efficient self-organizing maps, which are neural network classifiers. We were able to identify and estimate the percentage of six PFTs: haptophytes, chlorophytes, cryptophytes, Synechococcus, Prochlorococcus, and diatoms. We found that these PFTs present a peculiar variability due to the complex physical and...
Tipo: Text Palavras-chave: Phytoplankton; Secondary phytoplankton pigments; Self-organizing maps; Classification; Mediterranean Sea; Remote sensing.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00589/70145/68135.pdf
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Impact of Contrasted Weather Conditions on CDOM Absorption/Fluorescence and Biogeochemistry in the Eastern Lagoon of New Caledonia ArchiMer
Dupouy, Cécile; Röttgers, Rüdiger; Tedetti, Marc; Frouin, Robert; Lantoine, François; Rodier, Martine; Martias, Chloe; Goutx, Madeleine.
New Caledonia (Southwest Pacific), like all tropical Pacific Island countries, is impacted by weather events, climate change, and local anthropogenic forcing. Strong erosion of particles and dissolved organic matter (DOM) from ultramafic rocks, associated with trace metals dissemination (i.e., nickel, manganese and cobalt), potentially affects lagoon waters and coral reefs surrounding the main island. The CALIOPE (CALedonian Inherent Optical PropErties) cruises were performed along the Eastern Lagoon of New Caledonia (ELNC) (400 km, 13 transects from Bay to open ocean, 51 stations) during contrasted meteorological conditions: a dry period (October 2011), a windy situation (March 2014), and a strong rainy event (March 2016). CDOM absorption and fluorescence...
Tipo: Text Palavras-chave: Chromophoric dissolved organic matter; Fluorescence; New Caledonia; Tropical Pacific; Lagoons; Biooptics; Phytoplankton; Rivers.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00620/73166/72352.pdf
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Spatial variation in stable isotopes and fatty acid trophic markers in albacore tuna (Thunnus alalunga) from the western Indian Ocean ArchiMer
Dhurmeea, Zahirah; Pethybridge, Heidi; Langlais, Clothilde; Somes, Christopher J.; Nikolic, Natacha; Bourjea, Jerome; Appadoo, Chandani; Bodin, Nathalie.
Albacore tuna (Thunnus alalunga) is a highly economically important species in the western Indian Ocean. However, knowledge of its ecological and nutritional characteristics, essential for proper management of the species, is lacking in the region. The trophodynamics of the Indian Ocean albacore was thus examined using known fatty acid trophic markers (FATMs) of primary producers, nutritional condition indices (NCIs) (omega-3/omega-6 ratio and total fatty acid content (TFA)), and baseline and lipid corrected stable isotope of carbon (δ13Ccorr) and nitrogen (δ15Ncorr), measured in the muscle tissue. We applied generalized additive mixed models to understand the spatiotemporal patterns and drivers of these tracers, taking into consideration several intrinsic...
Tipo: Text Palavras-chave: Trophodynamics; Phytoplankton; Environmental parameters; Climate change.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00623/73497/72787.pdf
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Premières propositions pour un indice de composition du phytoplancton, basé sur les résultats des méthodes pigments et diversité génétique. Action 3 - Indice Composition - Livrable 1. Rapport final, mars 2015. ArchiMer
Siano, Raffaele; Delmas, Daniel; Lampert, Luis.
Tipo: Text Palavras-chave: Phytoplancton; Pigments; Indice composition; Diversité pigmentaire; Metabarcoding; Picoplancton; Mamiellophyceae; Chlb; Golfe de Gascogne; Panache de la Gironde; Phytoplankton; Pigments; Composition index; Pigment diversity; Metabarcoding; Picoplankton; Mamiellophyceae; Chlb; Gulf of Biscay; River Gironde plume.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00361/47263/47228.pdf
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Pyruvate kinase activity as index of carbohydrate assimilation by mesozooplankton: an early field implementation in the Bay of Biscay, NE Atlantic ArchiMer
Bergeron, Jean-pierre; Herbland, Alain.
Estimates of carbohydrate assimilation within the mesozooplankton compartment are a fundamental concern in oceanography because they give a general expression of the biologically-regulated incorporation of metabolic fuel produced from inorganic nutrients by phytoplankton in the sea. A new tool is proposed for the assessment of such processes. It is based on the measurement of the activity of an enzyme, pyruvate kinase (PK), on samples of the whole mesozooplankton community. Here, the results are presented of an early attempt at such an implementation in the Bay of Biscay (north-east Atlantic) in springtime. A main area situated in front of an estuary (Gironde) has been extensively studied-the same sampling grid was covered on three occasions (two 20 day...
Tipo: Text Palavras-chave: Bay of Biscay; Zooplankton; Phytoplankton; Pyruvate kinase; Carbohydrate.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/2001/publication-452.pdf
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Bilan des perturbations phytoplanctoniques observées sur les côtes françaises en 1986 ArchiMer
Belin, Catherine; Berthome, Jean-paul.
In 1986, 23 discolored waters were observed ; dinoflagellates often were the cause of them. Many developments of Prorocentrum minimum occured ; two of them were associated with shel1fishes mortalities. At contrary, other species which are suspected to be toxic for shellfishes, as Gyrodinium aureolum and Gyrodinium spirale, have not been associated with mortalities, although they have been observed in several areas. The developments of Dinophysis (cf. acuminata or sacculus) caused provisional prohibitions of shellfishes selling, especially in the south of Brittany. Another specie was also implicated in toxicities : Prorocentrum lima. Human intoxications and economic consequences were rather important.
Tipo: Text Palavras-chave: Phytoplancton; Toxicité; Surveillance; Santé publique; Mollusque; Phytoplankton; Toxicity; Survey; Public health; Mollusc.
Ano: 1988 URL: http://archimer.ifremer.fr/doc/00094/20541/18206.pdf
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Maitrise de la culture de masse de la diatomée Skeletonema costatum en système ouvert et continu sur un milieu en "eau de mer" ArchiMer
Brossard, Nicolas; Hussenot, Jerome.
Une culture extérieure en masse de la diatomée Skeletonema costatum, en système ouvert et continu, a été réalisée en automne 1996, au marais expérimental du CREMA I'Houmeau. Le but était d'apporter une nourriture complémentaire aux huîtres en période d'affinage.
Tipo: Text Palavras-chave: Phytoplancton; Microalgues; Diatomées; Skeletonema costatum; Culture de masse; Culture continue; Affinage d'huîtres; Phytoplankton; Diatoms; Skeletonema costatum; Mass culture; Continuous culture; Oyster fattening.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00020/13117/10126.pdf
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Nutrient and microbial dynamics in eutrophying shrimp ponds affected or unaffected by vibriosis ArchiMer
Lemonnier, Hugues; Courties, Claude; Mugnier, Chantal; Torreton, Jean-pascal; Herbland, Alain.
A field survey was conducted on two intensive shrimp farms using similar technical practices: one (DF) historically affected by a vibriosis, the other (HC) in which the pathogen has been observed although no mortality event has occurred. Because historical data suggest that eutrophication process may directly or indirectly play a role in the disease outbreak, we focussed our research on its dynamics. A higher variability of the phytoplanktonic compartment linked to an imbalance in the molar N:P ratio was observed in farm DF compared to farm HC, implying a modification on the linkage between the bacteria and phytoplankton compartments at DF. The beginning of the mortality outbreak at DF followed a shift from picoto nanophytoplankton. The organic matter...
Tipo: Text Palavras-chave: Aquaculture; Shrimp; Eutrophication; Ecosystem shift; Phytoplankton; Vibriosis.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00002/11368/8119.pdf
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Explaining dinophysis cf. acuminata abundance in Antifer (Normandy, France) using dynamic linear regression ArchiMer
Soudant, Dominique; Beliaeff, Benoit; Thomas, G.
Classical regression analysis can be used to model time series. However, the assumption that model parameters are constant over time is not necessarily adapted to the data. In phytoplankton ecology, the relevance of time-varying parameter values has been shown using a dynamic linear regression model (DLRM). DLRMs, belonging to the class of Bayesian dynamic models, assume the existence of a non-observable time series of model parameters, which are estimated on-line, i.e. after each observation. The aim of this paper was to show how DLRM results could be used to explain variation of a time series of phytoplankton abundance. We applied DLRM to daily concentrations of Dinophysis cf. acuminata, determined in Antifer harbour (French coast of the English...
Tipo: Text Palavras-chave: Phytoplankton; Dinophysis; Time series; Regression; Dynamic; Bayesian.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00337/44784/44490.pdf
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Abondance et composition du phytoplancton sur les lagunes méditerranéennes oligo et mésohalines ArchiMer
Derolez, Valerie; Bec, Béatrice; Grillas, Patrice; Sanchez, Ana Elena; Raimbault, Patrick.
In the context of WFD implementation on Mediterranean lagoons, work has been carried out since 2010 by Ifremer, Tour du Valat and IRSTEA (Onema and AERM & C fundings), to assess the relevance of macrophytes and macrofauna indicators for oligohaline and mesohaline lagoons (mean salinity <18 PSU). The question of the relevance of indicator metrics and thresholds for the "phytoplankton" biological quality element also arises, especially due to the confined nature of olgo-mesohaline lagoons. The objective of this study is to characterize the abundance and composition of phytoplankton on 5 oligo and mesohaline lagoons of the French Mediterranean coast (Scamandre, Crey, Charnier, Bolmon and Grand Palun). Analyses of accessory pigments (chlorophyll and...
Tipo: Text Palavras-chave: Lagunes; Méditerranée; Oligohalin; Mésohalin; Phytoplancton; Cytométrie; Pigments chlorophylliens; Lagoons; Mediterranean Sea; Oligohaline; Mesohaline; Phytoplankton; Cytometry; Chlorophyll pigments..
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00357/46816/46682.pdf
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