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Echantillonnage des debarquements en criee pour l'etude des structures demographiques. Sources de variabilite et optimisation du plan de sondage ArchiMer
Chevalier, Robert.
The author analyzed problems encountered in selecting a sampling design for estimating the age structures of landings. He studied the effects of various factors of variability on the optimal values of the sampling rates. The method used for this analysis could be employed to define an optimal sampling strategy to assess the age structures of landings from fish markets.
Tipo: Text Palavras-chave: Statistical sampling; Fish; Population structure; Age composition; Landing statistics.
Ano: 1985 URL: http://archimer.ifremer.fr/doc/1985/publication-1772.pdf
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Donnees nouvelles sur le germon Thunnus alalunga Bonnaterre 1788 dans le Nord-Est Atlantic. 2eme partie. Les populations de germons Thunnus alalunga dans le Nord-Est Atlantique. ArchiMer
Aloncle, Henri; Delaporte, Francis.
In this, the 2nd part of a study of Thunnus alalunga in the north-east Atlantic, populations and migrations are considered. The term 'population' is defined. The utilization of H. fusca as a biological 'marker' is considered and tagging experiments are described. Modal classes are examined: summary analysis, detailed analysis of fisheries. Internal temps and regulation are studied. The types of watering are defined and described and a statistical analysis as a function of the watering is made. An attempt at synthesis is made: Azorian, standard. Migratory determinism is examined.
Tipo: Text Palavras-chave: ANE; Thunnus alalunga; Population structure; Tagging; Migrations; Ecological distribution.
Ano: 1974 URL: http://archimer.ifremer.fr/doc/1974/publication-2043.pdf
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Lessons from the past: investigating historical data from bluefin tuna fisheries ArchiMer
Fromentin, Jean-marc.
In 1963, the leading fisheries targeting Atlantic bluefin tuna (Thunnus thynnus) in the Norwegian Sea and North Sea suddenly collapsed without any warning. Little is known about this collapse and several hypotheses have been put forward, such as changes in migratory routes, recruitment failure or eradication of a sub-population: all of these hypotheses could result from natural causes and/or from overfishing. To help explain this mysterious event, an original data set of the main bluefin tuna fisheries of the 20th century, including total catch and size composition of the catch, has been compiled and analysed. The results reveal a strong and unambiguous link between the Nordic purse seine and Spanish trap fisheries during the 1950s and 1960s. However, this...
Tipo: Text Palavras-chave: Thunnus thynnus; Retrospective analysis; Population structure; Migration patterns; Fisheries collapse.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6425.pdf
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Estimation des stocks de poisson des lagons de Nouvelle-Calédonie : 1 – Structure et stocks des communautés des poissons de récifs. ArchiMer
Letourneur, Y; Kulbicki, M; Labrosse, Pierre.
Lagoon fish in New Caledonia are mainly caught by artisanal fisheries and subsistence fishing. Reef fish are the major component of this catch. The present study aimed at estimating these reef fish standing stocks and at finding the main factors influencing the distribution of these fish. Sampling of 904 stations was stratified according to three zones (north, east and west) and three reef types (barrier, intermediate and fringing). Fish communities exhibited strong heterogeneity in their distribution, showing higher biomass (maximum of 447 g.m(-2)) and total standing stock (43 000 tonnes) in the north zone than in the east and west zones. Similarly, observed patterns were dependent on reef types: higher biomass and total standing stock being observed on...
Tipo: Text Palavras-chave: Poissons de récifs; Poissons démersaux commerciaux; Structure de population; Nouvelle-Calédonie; Océan Pacifique; Reef fish; Commercial demersal fish; Population structure; New Caledonia; SW Pacific Ocean.
Ano: 2000 URL: https://archimer.ifremer.fr/doc/00608/71968/70658.pdf
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Otolith shape variation provides a marker of stock origin for north Atlantic bluefin tuna (Thunnus thynnus) ArchiMer
Brophy, Deirdre; Haynes, Paula; Arrizabalaga, Haritz; Fraile, Igaratza; Fromentin, Jean-marc; Garibaldi, Fulvio; Katavic, Ivan; Tinti, Fausto; Karakulak, F. Saadet; Macias, David; Busawon, Dheeraj; Hanke, Alex; Kimoto, Ai; Sakai, Osamu; Deguara, Simeon; Abid, Nouredinne; Santos, Miguel Neves.
Two stocks of bluefin tuna (Thunnus thynnus) inhabit the north Atlantic; the western and eastern stocks spawn in the Gulf of Mexico and the Mediterranean Sea respectively. Trans-Atlantic movements occur outside spawning time whereas natal homing maintains stock structure. Commercial fisheries may exploit a mixed assemblage of both stocks. The incorporation of mixing rates into stock assessment is precluded by uncertainties surrounding stock discrimination. Otolith shape descriptors were used to characterise western and eastern stocks of Atlantic bluefin tuna in the present study and to estimate stock composition in catches of unknown origin. Otolith shape varied with length and between locations and years. Within a restricted size range (200-297-cm fork...
Tipo: Text Palavras-chave: Elliptical Fourier analysis; Population structure; Stock mixture analysis.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00346/45745/45381.pdf
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Atlantic bluefin tuna: population dynamics, ecology, fisheries and management ArchiMer
Fromentin, Jean-marc; Powers, Joseph.
Both old and new information on the biology and ecology of Atlantic bluefin tuna have confronted scientists with research challenges: research needs to be connected to current stock-assessment and management issues. We review recent studies on habitat, migrations and population structure, stressing the importance of electronic tagging results in the modification of our perception of bluefin tuna population dynamics and behaviour. Additionally, we question, from both scientific and management perspectives, the usefulness of the classical stock concept and suggest other approaches, such as Clark's contingent and metapopulation theories. Current biological information confirms that a substantial amount of uncertainty still exists in the understanding of...
Tipo: Text Palavras-chave: Tuna fisheries; Thunnus thynnus; Stock assessment and management; Population structure; Population dynamics; Atlantic bluefin tuna.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-797.pdf
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Le ceteau Dicologoglossa cunetata (Moreau), sa biologie et sa peche dans le sud du golfe de Gasgogne. ArchiMer
Forest, A.
This study deals with D.cuneata, a small soleid listed among the spp of NEAFC Recommendation 2 and exploited by the 'artisanal' trawlers in the South of the Bay of Biscay. The gonads/gutted fish wt ratio has been calculated throughout a yr, and shows that young Dicologoglossa are able to reproduce at age-group II. Spawning takes place during the 3rd quarter. Growth has been determined by otolith reading and length frequency analysis; Bertalanffy's and Gompertz's equations parameters have been studied, and attempts to estimate the instantaneous rate of total mortality have been made. The results are: male Z 3-5=0.74 and 0.83, female Z 3-5=0.96 and 1.35. Selectivity experiments carried out on board of R/V 'La Palagia' give a selection factor of 3.9. The...
Tipo: Text Palavras-chave: Microchirus; Dicologoglossa cuneata; Population structure; Gear selectivity; Total mortality; Population characteristics; Fishing effort; Artisanal fishing; Reproductive organs; Growth; Fishery statistics.
Ano: 1975 URL: http://archimer.ifremer.fr/doc/1975/publication-2003.pdf
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Comparison of methods for stock assessment of European hake Merluccius merluccius in the Gulf of Lions (Northwestern mediterranean) ArchiMer
Aldebert, Yvonne; Recasens, Laura.
European hake Merluccius merluccius is the main commercial demersal species in the Gulf of Lions (Northwestern Mediterranean). This fish is exploited by French and Spanish trawler fleets and by small-scale fisheries using gillnets and longlines. Data on landings and the demography of catches by type of gear are now available for the period 1988-1991. The assessment of the hake stock was carried out using methods of virtual population analysis (VPA), or cohort analysis, based respectively on mean pseudocohorts and cohorts by age. The results of these VPA were then analysed and compared from a methodological point of view. The general results have confirmed previous studies with regard to the level of exploitation of the species. The two methods gave quite...
Tipo: Text Palavras-chave: Merluccius merluccius; Méditerranée; Méthodologie; Évaluation des stocks; Démographie des captures; Mortalité par pêche; Merluccius merluccius; Mediterranean Sea; Methodology; Stock assessment; Population structure; Fishing mortality.
Ano: 1996 URL: http://archimer.ifremer.fr/doc/00188/29886/28341.pdf
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Bilan energetique d'une population naturelle de Crepidula fornicata dans le bassin de Marennes-Oleron ArchiMer
Deslous-paoli, Jean-marc; Heral, Maurice; Masse, H.
An energy budget has been evaluated for a natural population of Crepidula fornicata living at low water of spring tides in the oyster farming basin of Marennes-Oleron. This budget of production was estimated according to the position along the chain. The average biomass for an individual representative of the population was equivalent to 1.87 Kjoules, and the annual consumption C was 20.08 Kjoules/year. The energy budget expressed in percent of energy consummates was: C = Pg + Pr + Ps + R + F; 100 = 4.6 + 1.6 + 0.8 + 48 + 45. This budget is compared with literature data on other herbivorous gastropods and with those calculated for Crassostrea gigas in the same locality.
Tipo: Text Palavras-chave: Bivalvia; Crepidula fornicata; Seasonal variations; Population structure; Energy budget; Bassin de Marennes Oléron; Bilan énergétique; Crepidula fornicata.
Ano: 1983 URL: http://archimer.ifremer.fr/doc/1983/acte-1181.pdf
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Sex, size and timing: Sampling design for reliable population genetics analyses using microsatellite data ArchiMer
Dubois, Quentin; Lebigre, Christophe; Schtickzelle, Nicolas; Turlure, Camille.
Population genetics is used in a wide variety of fields such as ecology and biodiversity conservation. How estimated genetic characteristics of natural populations can be influenced by the sampling design has been a long-standing concern. Multiple simulation and empirical studies illustrated the influence of both sample size and polymorphism of markers. However, our review of studies on butterfly population genetics indicates no consensus on sample size for the estimation of genetic diversity or differentiation. Furthermore, other aspects of sampling design (sex ratio and timing of sampling) were not addressed and their potential impact on genetic parameter estimates rarely explored. Using a large empirical dataset (with spatial and temporal replicates)...
Tipo: Text Palavras-chave: Butterfly; Conservation; Genetic diversity; Metapopulation; Number of samples; Period of sampling; Population structure; Sampling scheme optimization; Sex ratio.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00416/52783/53664.pdf
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Depth-dependent gene flow in Gulf of Mexico cold seep Lamellibrachia tubeworms (Annelida, Siboglinidae) ArchiMer
Cowart, Dominique; Halanych, Kenneth M.; Schaeffer, Stephen W.; Fisher, Charles R..
Lamellibrachia vestimentiferan tubeworms form aggregations at hydrocarbon cold seeps in the deep Gulf of Mexico (GoM), creating structures that provide living space for other fauna. In the GoM, three Lamellibrachia taxa vary in morphology and depth ranges: Lamellibrachia luymesi (300–950 m), Lamellibrachia sp. 1 (950–2,604 m), and Lamellibrachia sp. 2 (1,175–3,304 m). While Lamellibrachia sp. 2 is consistently identified as a separate species, L. luymesi and sp. 1 cannot be discriminated using barcoding markers cytochrome oxidase subunit 1 (COI) and large ribosomal subunit rDNA (16S). To determine if limited gene flow was a factor in the formation of these taxa, we employed more quickly evolving markers, including mitochondrial cytochrome B (CYTB),...
Tipo: Text Palavras-chave: Deep sea; Hydrocarbon seep; Microsatellite; Population structure; Siboglinid; Vestimentiferan tubeworm.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00194/30494/29935.pdf
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Restriction to large-scale gene flow vs. regional panmixia among cold seep Escarpia spp. (Polychaeta, Siboglinidae) ArchiMer
Cowart, Dominique; Huang, Chunya; Arnaud-haond, Sophie; Carney, Susan L.; Fisher, Charles R.; Schaeffer, Stephen W..
The history of colonization and dispersal in fauna distributed among deep-sea chemosynthetic ecosystems remains enigmatic and poorly understood because of an inability to mark and track individuals. A combination of molecular, morphological and environmental data improves understanding of spatial and temporal scales at which panmixia, disruption of gene flow or even speciation may occur. Vestimentiferan tubeworms of the genus Escarpia are important components of deep -sea cold seep ecosystems, as they provide long-term habitat for many other taxa. Three species of Escarpia, Escarpia spicata [Gulf of California (GoC)], Escarpia laminata [Gulf of Mexico (GoM)] and Escarpia southwardae (West African Cold Seeps), have been described based on morphology, but...
Tipo: Text Palavras-chave: Deep sea; Hydrocarbon seep; Microsatellite; Population structure; Siboglinid; Vestimentiferan tubeworm.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00152/26354/24515.pdf
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Large-scale distribution of three deep-water squaloid sharks: Integrating data on sex, maturity and environment ArchiMer
Moura, Teresa; Jones, Emma; Clarke, Maurice W.; Cotton, Charles F.; Crozier, Paul; Daley, Ross K.; Diez, Guzman; Dobby, Helen; Dyb, Jan E.; Fossen, Inge; Irvine, Sarah B.; Jakobsdottir, Klara; Lopez-abellan, Luis J.; Lorance, Pascal; Pascual-alayon, Pedro; Severino, Ricardo B.; Figueiredo, Ivone.
Deep-water sharks exhibit species-specific reproductive strategies, which include segregation by sex, size and reproductive stage. However, due to the wide spatial distribution of most species, available information, usually collected at a regional scale, is usually not adequate to infer species reproductive spatial dynamics. This study draws together information on the distribution of reproductive stages of three species of squaliform sharks: Portuguese dogfish Centroscymnus coelolepis (Somniosidae), leafscale gulper shark Centrophorus squamosus (Centrophoridae) and birdbeak dogfish Deania calcea (Centrophoridae), gathering data from several geographical areas from the Atlantic, Indian and Pacific Oceans. For each species we analysed the sex ratio and the...
Tipo: Text Palavras-chave: Commercial fishery data; Deep-sea; Life stage; Population structure; Survey data.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00188/29902/29420.pdf
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Linking life-history traits, spatial distribution and abundance of two species of lugworms to bait collection: A case study for sustainable management plan ArchiMer
De Cubber, Lola; Lefebvre, Sebastien; Fisseau, Charline; Cornille, Vincent; Gaudron, Sylvie Marylene.
Arenicola spp. are marine benthic polychaetes dug for bait by anglers. Without regulation, this activity can lead to the decrease of lugworms' population meanwhile affecting the physical characteristics of the beach and the biodiversity. Here, we identified through morphology and genetics two species of lugworms, Arenicola marina and A. defodiens, within a Marine Protected Area of the Eastern English Channel (France). For each species, abundance and spatial distribution were assessed using a stratified random sampling and interpolation at four studied sites, as well as some life-history traits. These data were compared to lugworms' collection data to estimate its sustainability and to provide potential management measures. At one site, A. marina was...
Tipo: Text Palavras-chave: Arenicola marina; Arenicola defodiens; Spawning; Population structure; Size at first maturity; Recreational fisheries; Conservation; English channel.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00451/56284/60474.pdf
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Disturbance induced decoupling between host genetics and composition of the associated microbiome ArchiMer
Wegner, Karl Mathias; Volkenborn, Nils; Peter, Hannes; Eiler, Alexander.
Background Studies of oyster microbiomes have revealed that a limited number of microbes, including pathogens, can dominate microbial communities in host tissues such as gills and gut. Much of the bacterial diversity however remains underexplored and unexplained, although environmental conditions and host genetics have been implicated. We used 454 next generation 16S rRNA amplicon sequencing of individually tagged PCR reactions to explore the diversity of bacterial communities in gill tissue of the invasive Pacific oyster Crassostrea gigas stemming from genetically differentiated beds under ambient outdoor conditions and after a multifaceted disturbance treatment imposing stress on the host. Results While the gill associated microbial communities in...
Tipo: Text Palavras-chave: Microbiota; Population structure; Stress; Pathogen; Biological invasion; Pacific oyster; Crassostrea gigas; Vibrio; Mycoplasma.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00171/28202/26430.pdf
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Population structure and recruitment in mytilid bivalves from the Lucky Strike and Menez Gwen hydrothermal vent fields (37°17'N and 37°50'N on the Mid-Atlantic Ridge) ArchiMer
Comtet, Thierry; Desbruyeres, Daniel.
Population structure and recruitment pattern of undescribed mytilid bivalves that dominate the animal communities associated with vents of the Lucky Strike and Menez Gwen hydrothermal vent fields (37 degrees 17' N and 37 degrees 50' N on the Mid-Atlantic Ridge) were studied from size-frequency analyses. Intra-site comparisons reveal that length-frequency distributions differ significantly from one location to the other. This spatial segregation of the sizes could be due to spatio-temporal variability in environmental conditions and to intraspecific competition processes, especially adult-larval interactions (competition for space and food resources, intraspecific larviphagy) that could prevent larvae from settling on surfaces covered by adults. A modal...
Tipo: Text Palavras-chave: Hydrothermal vents; Mytilidae; Recruitment; Population structure; Size frequency; Spatial segregation; Intraspecific competition; Mid-Atlantic Ridge.
Ano: 1998 URL: https://archimer.ifremer.fr/doc/00446/55799/62521.pdf
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Genetic diversity, multiplicity of infection and population structure of Schistosoma mansoni isolates from human hosts in Ethiopia ArchiMer
Aemero, Mulugeta; Boissier, Jerome; Climent, Deborah; Mone, Helene; Mouahid, Gabriel; Berhe, Nega; Erko, Berhanu.
Background: Human intestinal schistosomiasis caused by Schistosoma mansoni and urinary schistosomiasis caused by Schistosoma haematobium are endemic in Ethiopia. Although schistosomes look morphologically uniform, there is variation in infectivity, egg productivity and virulence due to variation in their genetic make. Knowing the genetic diversity and population structure of S. mansoni isolates will enable to understand and consider the possible variability in terms of infectivity, egg productivity and virulence. Methods: Between 2010 and 2011, genetic diversity and population structure of Schistosoma mansoni isolates from four endemic areas of Ethiopia was assessed using previously published 11 polymorphic microsatellite loci. Miracidia were hatched from...
Tipo: Text Palavras-chave: Schistosoma mansoni; Microsatellite; Genetic diversity; Population structure; Ethiopia.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00302/41369/71868.pdf
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Importance and future of individual markers for the ecosystem approach to fisheries ArchiMer
Fromentin, Jean-marc; Ernande, Bruno; Fablet, Ronan; De Pontual, Helene.
The use of genetic, biochemical and electronic markers in population biology and ecology has been growing tremendously during the last two decades. The first part of this paper aims at reviewing the main principles and advances of these individual markers through a few key applications on exploited marine fish populations. The second part is more prospective and investigates some possibilities that could arise in the near future through: (i) the development of new markers, (ii) the combination of different markers and (iii) the combination of quantitative approaches-whether classical or new-with individual markers. It is finally stressed how crucial individual markers will be to unravel the biocomplexity of wild fish populations and the key role they...
Tipo: Text Palavras-chave: Genetic marker; Biochemical marker; Electronic tag; Otolith; Isotope; Population structure; Statistical and mechanistic model; Fisheries.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00000/11163/7522.pdf
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Preliminary spatially disaggregated stock assessment of northern hake, a widely distributed stock of the north-east Atlantic ArchiMer
Bertignac, Michel; Fernandez, Carmen; Methot, Richard.
European hake (Merluccius merluccius) is widely distributed over the north-east Atlantic shelf, from Norway to Mauritania. Despite its large distribution (covering ICES Division IIIa, Subareas IV, VI and VII and Divisions VIIIa,b,d, from Norway to the Bay of Biscay) and a complex population structure, the so-called northern stock of hake is currently assessed as a single unit, using a spatially aggregated implementation of the Stock Synthesis assessment model. In this study, a preliminary spatially explicit implementation of Stock Synthesis is developed, which accounts for the distribution of the hake population during its life cycle (nurseries and spawning areas) and the distribution of the fleets (trawlers, gillnetters and long-liners) exploiting the...
Tipo: Text Palavras-chave: Northern hake; Spatial dynamics; Population structure; Spatial stock assessment..
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00126/23764/21657.pdf
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Structure et diversité génétique des populations de raie bouclée en Méditerranée ArchiMer
Lecuyer, Romain.
Chondrichtyes are threatened by several disturbances among which is the significant development of fisheries during the 20th century. The Mediterranean sea has long been fished and keeps being intensely so by several nations that seek cost-effectiveness or food security above all. Such a background does not ease data recording and sharing for research purposes. This study mainly aims at assessing the population structure and status of thornback ray so as to avoid its deterioration due to bottom-trawl fisheries pressure, hardly reversible even with a sudden sound management. To do so, an extensive panel of nuclear genetic markers has been developed to analyze underlying structure along with differenciation and genetic diversity of Mediterranean populations....
Tipo: Text Palavras-chave: Méditerranée; Structure de populations; Différenciation; Diversité génétique; SNP; Raja clavata; Mediterranean sea; Population structure; Differenciation; Genetic diversity; SNP; Raja clavata.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00667/77899/80091.pdf
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