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Potential environmental drivers of a regional blue mussel mass mortality event (winter 2014, Breton Sound, France) ArchiMer
Polsenaere, Pierre; Soletchnik, Patrick; Le Moine, Olivier; Gohin, Francis; Robert, Stephane; Pepin, Jean-francois; Stanisiere, Jean-yves; Dumas, Franck; Bechemin, Christian; Goulletquer, Philippe.
In the context of global change, increasing mariculture production has raised particular concerns regarding its environmental impact and sustainability. Molluscs and particularly blue mussel account for a significant part of this total production. Although blue mussels are considered as pretty resilient to environmental disturbances, we report in this study an unprecedented mussel mortality event that occurred during the winter 2014 in the Breton Sound. 9000 metric tonnes of mussels were lost and mortality rates up to 100% were recorded at some farming areas. Through a coupling approach, the present work aimed to better understand the potential environmental drivers associated to those mortalities. Firstly we analysed long-term in situ and satellite data...
Tipo: Text Palavras-chave: Mytilus edulis mortalities; Climate change; Breton sound; Long-term monitoring; Hydrodynamic modelling; Vibriosis.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00376/48708/49083.pdf
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Circulation around La Reunion and Mauritius islands in the south-western Indian Ocean: A modeling perspective ArchiMer
Pous, Stephane; Lazure, Pascal; Andre, Gael; Dumas, Franck; Halo, Issufo; Penven, Pierrick.
Circulation around both islands is dominated by westward propagating features The predominant time scale of variability of currents and SSH is 60 days There is local generation of eddies in the lee of the islands due to topography
Tipo: Text Palavras-chave: Ocean circulation; Hydrodynamic model; La Reunion; Eddies; Rossby waves.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00195/30624/29073.pdf
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DILEMES - DIspersion LarvairE de Mytilus Edulis en baie de Seine. Rapport final ArchiMer
Le Gendre, Romain; Morin, Jocelyne; Maheux, Frank; Fournier, Florent; Simon, Benjamin; Cochard, Marie-laure; Pierre-duplessix, Olivier; Dumas, Franck; Harmel, Béatrice; Paul, Catherine; Riou, Philippe.
Ce rapport est constitué de deux volumes : - Document 1 : ≪ Rapport principal ≫ qui presente les travaux realises et les résultats obtenus - Document 2 : ≪ Annexes ≫ qui contient l’ensemble des cartes, graphiques et documents de communication...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00188/29916/28376.pdf
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Circulation and suspended sediment transport in a coral reef lagoon: The south-west lagoon of New Caledonia ArchiMer
Ouillon, S.; Douillet, Pascal; Lefebvre, J. P.; Le Gendre, Romain; Jouon, Aymeric; Bonneton, P.; Fernandez,; Chevillon, C.; Magand, O.; Lefevre, J.; Le Hir, Pierre; Laganier, R.; Dumas, Franck; Marchesiello, P.; Madani, A. Bel; Andrefouet, S.; Panche, J. Y.; Fichez, R..
The south-west lagoon of New Caledonia is a wide semi-open coral reef lagoon bounded by an intertidal barrier reef and bisected by numerous deep inlets. This paper synthesizes findings from the 2000-2008 French National Program EC2CO-PNEC relative to the circulation and the transport of suspended particles in this lagoon. Numerical model development (hydrodynamic, fine suspended sediment transport, wind-wave, small-scale atmospheric circulation) allowed the determination of circulation patterns in the lagoon and the charting of residence time, the later of which has been recently used in a series of ecological studies. Topical studies based on field measurements permitted the parameterisation of wave set-up induced by the swell breaking on the reef barrier...
Tipo: Text Palavras-chave: Hydrodynamics; Suspended sediment; New Caledonia; Coral reef lagoon; Sediment; Turbidity; Resuspension.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00014/12526/9401.pdf
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Modelling larval dispersal of the king scallop (Pecten maximus) in the English Channel: examples from the bay of Saint-Brieuc and the bay of Seine ArchiMer
Nicolle, Amandine; Dumas, Franck; Foveau, Aurelie; Foucher, Eric; Thiebaut, Eric.
The king scallop (Pecten maximus) is one of the most important benthic species of the English Channel as it constitutes the first fishery in terms of landings in this area. To support strategies of spatial fishery management, we develop a high-resolution biophysical model to study scallop dispersal in two bays along the French coasts of the English Channel (i.e. the bay of Saint-Brieuc and the bay of Seine) and to quantify the relative roles of local hydrodynamic processes, temperature-dependent planktonic larval duration (PLD) and active swimming behaviour (SB). The two bays are chosen for three reasons: (1) the distribution of the scallop stocks in these areas is well known from annual scallop stock surveys, (2) these two bays harbour important fisheries...
Tipo: Text Palavras-chave: King scallop; English Channel; Numerical model; Lagrangian transport; Planktonic larval duration; Swimming behaviour.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00146/25705/26396.pdf
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Suspended Sediment Dynamics in the Macrotidal Seine Estuary (France) - Part 1: Numerical Modeling of Turbidity Maximum Dynamics ArchiMer
Grasso, Florent; Verney, Romaric; Le Hir, Pierre; Thouvenin, Benedicte; Schulz, Elisabeth; Kervella, Youenn; Fard, I. Khojasteh Pour; Lemoine, J. -p.; Dumas, Franck; Garnier, Valerie.
Tidal pumping, baroclinic circulation and vertical mixing are known to be the main mechanisms responsible for the estuarine turbidity maximum (ETM) formation. However, the influence of hydro-meteorological conditions on ETM dynamics is still not properly grasped and requires further investigation to be quantified. Based on a realistic 3-dimensional numerical model of the macrotidal Seine Estuary (France) that accounts for mud and sand transport processes, the objective of this study is to quantify the influence of the main forcing (river flow, tides, waves) on the ETM location and mass changes. As expected, the ETM location is strongly modulated by semidiurnal tidal cycles and fortnightly timescales with a high sensitivity to river flow variations. The ETM...
Tipo: Text Palavras-chave: Estuary; Mud; Sand; Hydrodynamics; Turbidity maximum; Waves; Measurement; Modeling.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00416/52770/53638.pdf
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PREVIMER: Improvement of surge, sea level and currents modelling ArchiMer
Pineau-guillou, Lucia; Dumas, Franck; Theetten, Sebastien; Ardhuin, Fabrice; Lecornu, Fabrice; Le Roux, Jean-francois; Idier, Deborah; Muller, Heloise; Pedreros, Rodrigo.
The pre-operational system PREVIMER provides coastal observations and forecasts along French coasts. It provides, among other variables, currents, sea levels, surges and waves. This paper describes the development and validation of a high temporal (15 minutes) and spatial (250 m) resolution modeling system, based on MARS hydrodynamic model (Lazure and Dumas 2008), along the Atlantic and English Channel coasts. Models benefi t from experiments developed during the PREVIMER project by: (1) taking better into account wind and wave actions (improving surface drag coeffi cient parameterization), (2) taking into account a better meteorological forcing (improving spatial and temporal meteorological resolution). These high resolution models have been integrated in...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00189/30036/28522.pdf
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Mixed Layer formation and restratification in presence of mesoscale and submesoscale turbulence ArchiMer
Couvelard, Xavier; Dumas, Franck; Garnier, Valerie; Ponte, Aurelien; Talandier, Claude; Treguier, Anne-marie.
Recent realistic high resolution modeling studies show a net increase of submesoscale activity in fall and winter when the mixed layer depth is at its maximum. This submesoscale activity increase is associated with a reduced deepening of the mixed layer. Both phenomena can be related to the development of mixed layer instabilities, which convert available potential energy into submesoscale eddy kinetic energy and contribute to a fast restratification by slumping the horizontal density gradient in the mixed layer. In the present work, the mixed layer formation and restratification was studied by uniformly cooling a fully turbulent zonal jet in a periodic channel at different resolutions, from eddy resolving (10 km) to submesoscale permitting (2 km). The...
Tipo: Text Palavras-chave: Barticlinic jet; Mixed layer instabilities; Restratification; Mixedlayer depth; Vertical mixing; NEMO.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00286/39714/38169.pdf
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Numerical Wave Modeling in Conditions with Strong Currents: Dissipation, Refraction, and Relative Wind ArchiMer
Ardhuin, Fabrice; Roland, Aron; Dumas, Franck; Bennis, Anne-claire; Sentchev, Alexei; Forget, Philippe; Wolf, Judith; Girard, Francoise; Osuna, Pedro; Benoit, Michel.
Currents effects on waves have led to many developments in numerical wave modeling over the past two decades, from numerical choices to parameterizations. The performance of numerical models in conditions with strong currents is reviewed here, and observed strong effects of opposed currents and modulations of wave heights by tidal currents in several typical situations are interpreted. For current variations on small scales, the rapid steepening of the waves enhances wave breaking. Using different parameterizations with a dissipation rate proportional to some measure of the wave steepness to the fourth power, the results are very different, none being fully satisfactory, which points to the need for more measurements and further refinements of...
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Ano: 2012 URL: http://archimer.ifremer.fr/doc/00130/24159/22254.pdf
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Les risques conchylicoles en Baie de Quiberon. Première partie : le risque de mortalité virale du naissain d’huître creuse Crassostra gigas. Rapport final du projet Risco 2010-2013 ArchiMer
Mazurie, Joseph; Stanisiere, Jean-yves; Langlade, Aime; Bouget, Jean-francois; Dumas, Franck; Treguier, Cathy; Leclerc, Emilie; Ravaud, Emilie; Quinsat, Kevin; Gabellec, Raoul; Retho, Michael; Cochet, Helene; Dreano, Alain.
This study (“Risco”), implicating both industry, socio-economic experts and biologists, was funded by the Regional Council of Brittany, for 3 years (2010-2013), to investigate upon the origin of oysters (Crassostrea gigas) mortalities in the bay of Quiberon (South Brittany, France). Specific mortalities of adult oysters were recorded in this bay in 2006, whereas mortalities of one year old spat were observed since in 2008 in this bay as at a national scale. The experimental protocol in 2010, including a monthly survey of oyster batches at 15 experimental stations, allowed to assess the risk for one-year oysters, due to viral disease. A clear spatial distribution of this risk was evidenced, with a western area spared from contamination and mortality, and a...
Tipo: Text Palavras-chave: Baie de Quiberon; Crassostrea gigas; Mortalité; Herpès-virus; OsHV-1; Épidémiologie; Modèle.; Quiberon bay; Crassostrea gigas; Mortality; Herpes-virus; OsHV-1; Epidemiology; Model.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00179/29043/27528.pdf
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Modelling larval dispersal of Pecten maximus in the English Channel: a tool for the spatial management of the stocks ArchiMer
Nicolle, Amandine; Moitie, Roderic; Ogor, Julien; Dumas, Franck; Foveau, Aurelie; Foucher, Eric; Thiebaut, Eric.
The great scallop Pecten maximus supports one of the most important and valuable commercial fisheries around the British Isles and in the northwest of France, but the resource is mainly managed at the scale of each local fishing ground through a combination of European, national and local measures. To analyse the larval dispersal pathways and connectivity patterns among fishing grounds of the great scallop in the Celtic Sea and the English Channel, a particle tracking model was developed. The model combined a 3D physical circulation model that simulated currents and temperature fields and a scallop larval submodel that took into account a temperature-dependent planktonic larval duration and an active vertical swimming behaviour. Due to the lack of stock...
Tipo: Text Palavras-chave: Connectivity; English Channel; Fishery management; Great scallop; Larval dispersal; Particle-tracking model.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00363/47375/50155.pdf
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TRANSMER, un modèle hydrodynamique rapide et précis pour la simulation à moyen et long terme des transferts de radionucléides en Manche et dans le sud de la Mer du Nord ArchiMer
Bailly Du Bois, Pascal; Dumas, Franck.
TRANSMER hydrodynamic model simulates dispersion of dissolved substances in seawater at the scale of the English Channel and the south of the North Sea with a mesh size of one kilometre and a time step of 30 minutes. It has been qualitatively and quantitatively validated by 1400 measurement of 125Sb in seawater. This model evaluates the medium- and long-term consequences of releases of soluble pollutants in the marine ecosystem under normal or accidental conditions, at a very low computation cost (it takes less than one hour to simulate one year).
Tipo: Text Palavras-chave: English Channel; North Sea; Radionuclide; Concentration; Dispersion; Dissolved substances; Seawater; Hydrodynamic model; Modèle; Sb 125; Dispersion; Mer du Nord; Manche.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/2004/acte-563.pdf
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PROTEVS-MED field experiments: very high resolution hydrographic surveys in the Western Mediterranean Sea ArchiMer
Garreau, Pierre; Dumas, Franck; Louazel, Stephanie; Correard, Stéphanie; Fercocq, Solenn; Le Menn, Marc; Serpette, Alain; Garnier, Valerie; Stegner, Alexandre; Le Vu, Briac; Doglioli, Andrea; Gregori, Gerald.
From 2015 to 2018 four field experiments (seven legs) were performed in the Western Mediterranean basin during winter or early spring. The main objectives were the assessment of high-resolution modeling and the observation of mesoscale structure and associated ageostrophic dynamics. Thanks to the intensive use of a towed vehicle undulating in the upper oceanic layer between 0 and 400 m depth (SeaSoar), a large number of very high resolution hydrographic transects (total length about 10 000 km) were measured, observing mesoscale dynamics (slope current and its instabilities, anticyclonic eddies, submesoscale coherent vortices, frontal dynamics, convection events, strait outflows) and submesoscale processes like stirring, mixed-layer or symmetric...
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Ano: 2020 URL: https://archimer.ifremer.fr/doc/00611/72277/71071.pdf
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BMGTools : a community tool to handle model grid and bathymetry ArchiMer
Theetten, Sebastien; Thiebault, Benoit; Dumas, Franck; Paul, Julien.
A software called BathyMeshGridTools is proposed to facilitate the construction of gridded bathymetry data for hydrodynamic ocean models from global to coastal scales. These tools consist of a graphical interface written in Java and a computational core written in FORTRAN, which are freely distributed under LGPL and GPL licenses (http://www.ifremer.fr/bmgtools). The process of gridded bathymetry creation relies on three successive tasks : (1) creation of structured grid using graphic user interface for positioning, resizing and creating a hierarchy of nested model grids on map ; (2) data interpolation using a grid-to-grid interpolation algorithm for interpolation of Digital Terrain Model and kriging algorithm for bathymetric sounding data interpolation ;...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00195/30646/29101.pdf
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PREVIMER: A contribution to in situ coastal observing systems ArchiMer
Charria, Guillaume; Repecaud, Michel; Quemener, Loic; Menesguen, Alain; Rimmelin-maury, Peggy; L'Helguen, Stephane; Beaumont, Laurence; Jolivet, Aurelie; Morin, Pascal; Mace, E; Lazure, Pascal; Le Gendre, Romain; Jacqueline, Franck; Verney, Romaric; Marie, Louis; Jegou, Paul; Le Reste, Serge; Andre, Xavier; Dutreuil, Vincent; Regnault, Jean-pierre; Jestin, Herve; Lintanf, Herve; Pichavant, Pascal; Retho, Michael; Allenou, Jean-pierre; Stanisiere, Jean-yves; Bonnat, Armel; Nonnotte, Lidwine; Duros, Wenceslas; Tarot, Stephane; Carval, Thierry; Le Hir, Pierre; Dumas, Franck; Vandermeirsch, Frederic; Lecornu, Fabrice.
To design a prototype for an Integrated Ocean Observing System (IOOS), at least three components are mandatory: a modeling platform, an in situ observing system and a structure to collect and to disseminate the information (e.g. database, website). The PREVIMER project followed this approach and in order to sustain model applications, PREVIMER has developed, funded and organized part of in situ observing networks in the Bay of Biscay and the Channel. For a comprehensive system, focus was addressed on fi xed platforms (MAREL MOLIT, MAREL Iroise, Island network and D4 for sediment dynamics), ships of opportunity (RECOPESCA program and FerryBoxes), and coastal profi lers (ARVOR-C/Cm). Each system is briefl y described and examples of scientifi c results...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00197/30785/29143.pdf
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General Introduction: PREVIMER, a French pre-operational coastal ocean forecasting capability. ArchiMer
Dumas, Franck; Pineau-guillou, Lucia; Lecornu, Fabrice; Le Roux, Jean-francois; Le Squere, Bruno.
Pre-operational system PREVIMER provides with coastal observations and forecasts along French coasts: currents, waves, sea levels, temperature, salinity, primary production and turbidity. These marine environmental data come from in situ observations, satellite images, and numerical models. They are centralized and archived in PREVIMER databases, then published on website (real time and historical data), and freely available to users, private companies as well as public administrations. This paper describes in details PREVIMER components and users.
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00189/30037/28523.pdf
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Fast hydrodynamic model for medium- and long-term dispersion in seawater in the English Channel and southern North Sea, qualitative and quantitative validation by radionuclide tracers ArchiMer
Bailly Du Bois, Pascal; Dumas, Franck.
The database for medium- and long-term model validation using Sb-125 released by the La Hague reprocessing plant includes 1400 measurements performed between 1987 and 1994 in the English Channel and the North Sea and data for each release since 1982. Antimony-125 has a conservative behaviour in water masses over a period of several years. These data can be used qualitatively and quantitatively to compare the measured concentrations with the calculated ones and quantities of tracers. Tritium measurements are also available for model calibration. A two-dimensional hydrodynamic model has been developed to allow repetitive long-term simulations. This model uses a database of residual tidal currents calculated using the Lagrangian barycentric method [Salomon,...
Tipo: Text Palavras-chave: North Sea; English Channel; European Continental Shelf; Tritium; Sb 125; Radioactive tracer; Wind stress; Calibration; Modelling.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-731.pdf
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Larval Dispersal Modeling of Pearl Oyster Pinctada margaritifera following Realistic Environmental and Biological Forcing in Ahe Atoll Lagoon ArchiMer
Thomas, Yoann; Dumas, Franck; Andrefouet, Serge.
Studying the larval dispersal of bottom-dwelling species is necessary to understand their population dynamics and optimize their management. The black-lip pearl oyster (Pinctada margaritifera) is cultured extensively to produce black pearls, especially in French Polynesia's atoll lagoons. This aquaculture relies on spat collection, a process that can be optimized by understanding which factors influence larval dispersal. Here, we investigate the sensitivity of P. margaritifera larval dispersal kernel to both physical and biological factors in the lagoon of Ahe atoll. Specifically, using a validated 3D larval dispersal model, the variability of lagoon-scale connectivity is investigated against wind forcing, depth and location of larval release, destination...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00197/30843/29210.pdf
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Spectral analysis of mean flow and turbulence forced by waves in a horizontally homogeneous zone of the Iroise sea A comparison with current times series measured by high-frequency radar ArchiMer
Simon, Guillaume; Dumas, Franck; Duhaut, Thomas.
The 1D version of the Model for Applications at Regional Scale is used to parameterize the effects of sea surface waves in 2D in a horizontally homogeneous offshore zone of the Iroise sea. Here we present the first simulation of the Iroise sea including sea surface waves forcing, and more generally, the first study of a boundary layer including the Hasselmann force with a tidal wave. We use a single equation turbulence closure based on a non-local diagnosis for energetic and dissipation length scales. The turbulent energy flux at the surface due to whitecaps and the Hasselmann force induced by Stokes drift are assessed using the whole sea surface waves spectrum given by the Wave Watch Third generation model. The ability of the parameterization to reproduce...
Tipo: Text Palavras-chave: Ocean turbulence; Waves; Stokes drift; Iroise sea; MARS; High-frequency radar; OSCR.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00053/16467/14087.pdf
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Un nouveau modèle couplé vagues-courant 3D : développement et validation ArchiMer
Bennis, Anne-claire; Ardhuin, Fabrice; Odaka, Tina; Dumas, Franck.
A numerical model coupling the three-dimensional oceanic circulation, thanks to the MARS3D model, and the sea state computed by the WAVEWATCH III model, is developed in order to study the hydrodynamic of the nearshore zone. The main principle of the coupled model based on the coupler PALM and the necessary modifications made for the coupling procedure to both numerical codes are described. First tests in horizontal two-dimension are made and they allowed us to develop a primary version. For three-dimensional flow, we show that the coupled model must solve the quasi-Eulerian velocity. In fact, a coherent analytical form of the wave forcing for the Lagrangian velocity does not exist. This point is illustrated by one example with large errors in comparison...
Tipo: Text Palavras-chave: Modélisation couplée; Circulation côtière; MARS3D; WAVEWATCH III.; Wave-current modeling; Nearshore zone; MARS3D; WAVEWATCH III.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00286/39707/38162.pdf
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