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| Registros recuperados: 117 | |
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| Kivela, Mikko; Arnaud-haond, Sophie; Saramaki, Jari. |
| The recent application of graph-based network theory analysis to biogeography, community ecology and population genetics has created a need for user-friendly software, which would allow a wider accessibility to and adaptation of these methods. EDENetworks aims to fill this void by providing an easy-to-use interface for the whole analysis pipeline of ecological and evolutionary networks starting from matrices of species distributions, genotypes, bacterial OTUs or populations characterized genetically. The user can choose between several different ecological distance metrics, such as Bray-Curtis or Sorensen distance, or population genetic metrics such as FST or Goldstein distances, to turn the raw data into a distance/dissimilarity matrix. This matrix is... |
| Tipo: Text |
Palavras-chave: Biogeography; Biological communities; Graph theory; Microbial ecology; Network analysis; Population genetics. |
| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00197/30853/29217.pdf |
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| Huvet, Arnaud; Lapegue, Sylvie; Magoulas, A; Boudry, Pierre. |
| The respective status of the Portuguese oyster, Crassostrea angulata, and the Pacific oyster, Crassostrea gigas, has long been a matter of controversy. Morphological and physiological similarities, homogeneity of allozyme allelic frequencies between populations of the two taxa and the demonstration of hybridization lead most authors to suggest that they should be regrouped within the same species. The risk of introgression and the present expansion of C. gigas aquaculture in Europe raises the question of the need for preservation of C. angulata in Europe, as only a few populations remain. We studied European and Asian populations of C. gigas and C. angulata using microsatellite and mitochondrial DNA markers to estimate their genetic diversity and... |
| Tipo: Text |
Palavras-chave: Phylogeography; Population genetics; Microsatellites; Crassostrea gigas; Crassostrea angulata. |
| Ano: 2000 |
URL: https://archimer.ifremer.fr/doc/2000/publication-707.pdf |
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| Feis, Marieke E.; Thieltges, David W.; Olsen, Jeanine L.; De Montaudouin, Xavier; Jensen, K. Thomas; Bazairi, Hocein; Culloty, Sarah C.; Luttikhuizen, Pieternella C.. |
| Although molecular ecology of macroparasites is still in its infancy, general patterns are beginning to emerge, e.g. that the most vagile host in a complex life cycle is the main determinant of the population genetic structure of their parasites. This insight stems from the observation that populations of parasites with only freshwater hosts are more structured than those with terrestrial or airborne hosts. Until now, the same has not been tested for marine systems, where, in theory, a fully marine life cycle might sustain high dispersal rates because of the absence of obvious physical barriers in the sea. Here, we tested whether a marine trematode parasite that utilises migratory birds exhibited weaker population genetic structure than those whose life... |
| Tipo: Text |
Palavras-chave: Marine ecology; Population genetics; Parasite; Host parasite dynamics; Trematode; Invertebrates; Gymnophallus choledochus; Bucephalus minimus. |
| Ano: 2015 |
URL: https://archimer.ifremer.fr/doc/00375/48625/49417.pdf |
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| Bachelet, G; Simon-bouhet, B; Desclaux, C; Garcia-meunier, P; Mairesse, G; De Montaudouin, X; Raigne, H; Randriambao, K; Sauriau, Pierre-guy; Viard, F. |
| The distribution area of the nassariid gastropod Cyclope neritea (L.) includes the Mediterranean and the Black Sea, as well as the Atlantic coasts of the southern Iberian Peninsula. The species has spread north to the eastern Bay of Biscay (Arcachon Bay in 1976, Marennes-Oleron area and Morbihan Gulf in 1983-84). This spread might be explained either by (1) a natural spread favoured by environmental changes (e.g. an increase of temperature) or (2) a sudden range expansion due to the introduction of individuals from distant native populations. Molecular genetic analyses based on mitochondrial markers suggest that the present C. neritea population in Arcachon Bay has been introduced, probably unintentionally with oyster transfers, from several source... |
| Tipo: Text |
Palavras-chave: Introduced species; Scavenging gastropods; Population genetics; Interspecific competition; Behaviour parasites. |
| Ano: 2004 |
URL: http://archimer.ifremer.fr/doc/00000/10848/7582.pdf |
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| Pivotto, I. D.; Nerini, D.; Masmoudi, M.; Kara, H.; Chaoui, L.; Aurelle, D.. |
| Climate change has a strong impact on marine ecosystems, including temperate species. Analysing the diversity of thermotolerance levels within species along with their genetic structure enables a better understanding of their potential response to climate change. We performed this integrative study on the Mediterranean octocoral Eunicella cavolini, with samples from different depths and by means of a common garden experiment. This species does not host photosynthetic Symbiodinium, enabling us to focus on the cnidarian response. We compared the thermotolerance of individuals from 20 m and 40 m depths from the same site and with replicates from the same colony. On the basis of an innovative statistical analysis of necrosis kinetics and risk, we demonstrated... |
| Tipo: Text |
Palavras-chave: Climate change; Adaptation; Acclimatization; Eunicella cavolini; Mediterranean sea; Population genetics. |
| Ano: 2015 |
URL: https://archimer.ifremer.fr/doc/00371/48264/48637.pdf |
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| Borcier, Elodie; Charrier, Gregory; Couteau, Jérôme; Maillet, Géraldine; Le Grand, Fabienne; Bideau, Antoine; Waeles, Mathieu; Le Floch, Stephane; Amara, Rachid; Pichereau, Vianney; Laroche, Jean. |
| The objective of this study was to develop an integrative approach in ecotoxicology (from biomarkers to population genetics) to assess the ecological status of fish populations. Flounders (Platichthys flesus) collected after the spawning season in the heavily polluted Seine estuary were compared with the moderately polluted Bay of Douarnenez. The muscle energetic reserves were highly depleted in Seine vs. Douarnenez fish. The Seine fish displaying a reduced capacity to manage the oxidative stress and a higher energetic metabolism. An increase in the content of muscle membrane phospholipids (sphingomyelin, phosphatidylserine, free sterols) was detected in the Seine vs. Douarnenez fish. The data integration allowed to hypothesize relationships between... |
| Tipo: Text |
Palavras-chave: Platichthys flesus; Estuaries; Biomarkers; Bioenergetics; Polar lipids; Population genetics. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00658/76981/78238.pdf |
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| Boudry, Pierre; Launey, Sophie; Diaz-almela, A.; Naciri-graven, Yamama; Ledu, Christophe; Mira, S.; Taris, Nicolas; Bonhomme, Francois; Lapegue, Sylvie. |
| PCR-based DNA markers enable the study of diversity and differentiation of marine organisms at different stages of their life cycle. Our study of European fiat oyster (Ostrea edulis) populations aimed to describe their spatial and temporal dynamics. First, we analyzed adults sampled over the natural range of the species. An Atlantic/Mediterranean differentiation pattern was observed. Similar patterns of variation were found using allozymes, microsatellites and mitochondrial DNA, aIl which support an isolation by distance model. High variability was observed in the range of diversity between populations using a mitochondrial marker, a reflection of small effective population sizes in sorne locations. A 10fold quantitative difference was observed in Fst,... |
| Tipo: Text |
Palavras-chave: Recruitment; Diversity; Molecular markers; Population genetics; Ostrea edulis; Flat oyster; Dynamique de recrutement; Diversité génétique; Microsatellites; Marqueurs moléculaires; Génétique des populations; Ostrea edulis; Huître plate. |
| Ano: 2003 |
URL: http://archimer.ifremer.fr/doc/2003/acte-2851.pdf |
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| Galaska, Matthew P.; Wethey, David S.; Arias, Andrés; Dubois, Stanislas; Halanych, Kenneth M.; Woodin, Sarah A.. |
| Aim Evolutionary history of natural populations can be confounded by human intervention such as the case of decorator worm species Diopatra (Onuphidae), which have a history of being transported through anthropogenic activities. Because they build tubes and act as ecosystem engineers, they can have a large impact on the overall ecosystem in which they occur. One conspicuous member, Diopatra biscayensis, which was only described in 2012, has a fragmented distribution that includes the Bay of Biscay and the Normanno‐Breton Gulf in the English Channel. This study explores the origin of these worms in the Normanno‐Breton region, which has been debated to either be the result of a historic range contraction from a relic continuous population or a more recent... |
| Tipo: Text |
Palavras-chave: Bay of Biscay; Convex Hull; Onuphidae; Phylogeography; Population genetics; RADseq. |
| Ano: 2021 |
URL: https://archimer.ifremer.fr/doc/00692/80411/83522.pdf |
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| Shinn, A.P.; Banks, B.A.; Tange, N.; Bron, J.E.; Sommerville, C.; Aoki, T.; Wootten, R.. |
| Genetic differentiation within the salmon louse Lepeophtheirus salmonis (Krøyer, 1837), was investigated by the sequencing of specific nucleotide regions. Partial sequences of the 18S ribosomal RNA gene and the ribosomal internal transcribed spacer (ITS-1) region from single sea lice were amplified by the polymerase chain reaction (PCR). Lice were collected from wild and farmed Atlantic salmon ( Salmo salar L., 1758) from nine selected localities around the Scottish coastline. A 0.9kb fragment of the 18S ribosomal RNA gene was amplified and compared for several samples of lice which showed no observable differences between the lice from different collection sites confirming the absence of cryptic species. The 454 nucleotide ITS-1 sequence showed... |
| Tipo: Article / Letter to the editor |
Palavras-chave: Sea louse; Copepod; Crustacea; Atlantic salmon; Sequencing; 18S ribosomal DNA; Internal transcribed spacer; Population genetics. |
| Ano: 2000 |
URL: http://www.repository.naturalis.nl/record/534343 |
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| Pelser, P.B.; Nickrent, D.L.; Barcelona, J.F.. |
| Rafflesia speciosa is a threatened endo-holoparasitic species. It has several populations in the Central Panay Mountain Range (CPMR) of Panay island and a single population on Negros Island. Because R. speciosa is the only Philippine species of the genus that is not endemic to an individual island, it is a suitable species for improving our understanding of the factors underlying the high island endemism of Philippine Rafflesia. For this purpose and to inform the conservation management of R. speciosa, patterns of genetic diversity and differentiation were studied using 15 microsatellite loci and samples from nine populations. None of these populations shows evidence of inbreeding and R. speciosa has similar levels of heterozygosity as generally observed... |
| Tipo: Article / Letter to the editor |
Palavras-chave: Microsatellites; Conservation; Negros; Panay; Philippines; Population genetics. |
| Ano: 2018 |
URL: http://www.repository.naturalis.nl/record/655789 |
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| Saldamando,Clara I; Vélez-Arango,Ana M. |
| Spodoptera frugiperda (Smith) is a polifagous insect of major economic impact in the western hemisphere and exhibits two strains (i.e., corn and rice) that are morphologically identical but differ in ecology, genetics and physiology. In this work we identified these strains and their respective hybrids by using a PCR-RFLP of the COI gene and PCR of the tandem region FR. Moreover, we performed a population structure analysis by using 253 larvae from Tolima, a region where S. frugiperda is a pest on corn, rice, sorghum and cotton. Corn strain was found on 42% in corn, 34% in cotton, 19% in sorghum and 0.04 % in rice and rice strain on 35% in corn, 0.06% in cotton, 0.06% in sorghum and 53% in rice, demonstrating that corn strain specificity is superior to... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Strain; Population genetics; Pest. |
| Ano: 2010 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1519-566X2010000600012 |
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| Registros recuperados: 117 | |
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