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Modelling secondary production in the Norwegian Sea with a fully coupled physical/primary production/individual-based Calanus finmarchicus model system ArchiMer
Hjøllo, Solfrid Sætre; Huse, Geir; Skogen, Morten D.; Melle, Webjørn.
The copepod Calanus finmarchicus is the dominant species of the meso-zooplankton in the Norwegian Sea, and constitutes an important link between the phytoplankton and the higher trophic levels in the Norwegian Sea food chain. An individual-based model for C. finmarchicus, based on super-individuals and evolving traits for behaviour, stages, etc., is two-way coupled to the NORWegian ECOlogical Model system (NORWECOM). One year of modelled C. finmarchicus spatial distribution, production and biomass are found to represent observations reasonably well. High C. finmarchicus abundance is found along the Norwegian shelf-break in the early summer, while the overwintering population is found along the slope and in the deeper Norwegian Sea basins. The timing of the...
Tipo: Text Palavras-chave: Calanus finmarchicus; Zooplankton; IBM; NORWECOM; End-to-end modelling; North-East Atlantic.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00076/18690/16242.pdf
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Surveillance Ecologique du site du Blayais - Année 2011 ArchiMer
Quintin, Jean-yves; Etcheber, Henri; Sottolichio, Aldo; Oggian, Georges; Derriennic, Herve; Mallet, Céline; Roux Ducept, Alexandra; Sautour, Benoît; Parra, René; Bachelet, Guy; Leconte, Michel.
Monitoring n° 34 of the BLAYAIS nuclear power plant takes into account studies conducted between April and November 2011. Physicochemistry, Bathymetry, Contaminants, Bacteriology, Zooplankton, Benthic macrofauna, are reported.
Tipo: Text Palavras-chave: Centrale nucléaire; Pelagos; Physico chimie; Hydrologie; Microbiologie; Estuaire de la Gironde; Surveillance; Bathymétrie; Zooplancton; Macrofaune benthique.; Nuclear power plant; Pelagos; Physico chemistry; Hydrology; Zooplankton; Gironde estuary; Monitoring; Bathymetry; Benthic macrofauna.; Microbiology.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00333/44415/44090.pdf
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Contribution to the understanding of the cycle of the protozoan parasite Marteilia refringens ArchiMer
Arzul, Isabelle; Chollet, Bruno; Boyer, S.; Bonnet, D.; Gaillard, Juliette; Baldi, Yoann; Robert, Maeva; Joly, Jean-pierre; Garcia, Celine; Bouchoucha, Marc.
The paramyxean parasite Marteilia refringens infects several bivalve species including European flat oysters Ostrea edulis and Mediterranean mussels Mytilus galloprovincialis. Sequence polymorphism allowed definition of three parasite types ‘M’, ‘O’ and ‘C’ preferably detected in oysters, mussels and cockles respectively.Transmission of the infection from infected bivalves to copepods Paracartia grani could be experimentally achieved but assays fromcopepods to bivalves failed. In order to contribute to the elucidation of the M. refringens life cycle, the dynamics of the infection was investigated in O. edulis, M. galloprovincialis and zooplankton over one year in Diana lagoon, Corsica (France). Flat oysters appeared non-infected while mussels were infected...
Tipo: Text Palavras-chave: Bivalves; Marteilia refringens; Copepods; Paracartia latisetosa; Zooplankton; Parasite life cycle.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00165/27635/25768.pdf
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Particle flux in the Rainbow hydrothermal vent field (Mid-Atlantic Ridge): Dynamics, mineral and biological composition ArchiMer
Khripounoff, Alexis; Vangriesheim, Annick; Crassous, Philippe; Segonzac, Michel; Colaco, Ana; Desbruyeres, Daniel; Barthelemy, Roxane.
In order to provide information about the export and the distribution of hydrothermal particulate material to the surrounding deep ocean, four moorings were deployed in the vicinity of the hydrothermal Rainbow vent field (Mid-Atlantic Ridge, 36 degrees 14'N, 2250 m depth). The first mooring was a sediment trap with a current meter deployed at 2 m from a chimney of the Rainbow vent field and 1.5 m above the bottom (a.b.) for 16 days. It represented the reference for the initial composition of particles produced by the vent. The total mean mass particle flux (6.9 g m(-2) d(-1)) was distinctly higher than the flux measured at the shallower hydrothermal vents on the MAR segment. This particulate flux showed a high temporal variation at the scale of a few days...
Tipo: Text Palavras-chave: Zooplankton; Biochemistry; Geochemistry; Particle flux; Hydrothermal vent.
Ano: 2001 URL: https://archimer.ifremer.fr/doc/2001/publication-801.pdf
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Proposal of a trophic relationship between Chaetognatha and Cnidaria based on Mitochondrial COI sequences ArchiMer
Da Mota Melo, Danielle Caroline; Costa Brandao, Manoela; De Albuquerque, Simone Maria; Neumann-leitão, Sigrid.
This is the first study in Brazil to propose a trophic relationship between Chaetognatha and Cnidaria based on molecular data (COI gene - DNA barcode). Cnidaria COI sequences were detected in tissue samples from two specimens of Flaccisagitta enflata collected in the surroundings of Fernando de Noronha archipelago, Tropical Western Atlantic. The methodology used followed all the requirements for a safe molecular manipulation, making the possibility of contamination unlikely. A search carried in BLAST showed that both sequences provided here presented a combination of highest query coverage and match identity with Nemopilema nomurai (Cnidaria: Scyphozoa), supporting the hypothesis that they belong to a species of jellyfish. Since gelatinous taxa are known...
Tipo: Text Palavras-chave: DNA barcode; Food item; Oceanic island; Tropical Atlantic; Zooplankton; Cytochrome oxidase subunit I gene.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00628/74057/73490.pdf
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Composition en cires, triglycérides, protéines et sucres du mésozooplancton ArchiMer
Alayse-danet, Anne-marie; Daniel, Jean-yves; Le Coz, Jean-rene.
Analyses effectuées sur le zooplancton total des pêches verticales au WP2 et sur des animaux triés à partir des pêches horizontales (Campagne RCA sur les côtes Atlantiques du Portugal). On ne signale pas de différence significative entre la composition biochimique des populations du large et de la côte
Tipo: Text Palavras-chave: Zooplancton; Milieu marin; Composition chimique; Glucide; Cire animale; Triglycéride; Protéine; Océan Atlantique Nord; Upwelling; Méiofaune; Portugal; France; Zone côtière; Zooplankton; Marine environment; Chemical composition; Carbohydrate; Animal wax; Triglyceride; Proteins; North Atlantic; Upwelling; Meiofauna; Portugal; France; Coastal zone.
Ano: 1983 URL: http://archimer.ifremer.fr/doc/00189/29976/28429.pdf
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Surveillance Ecologique du site du "Blayais" - année 2007 ArchiMer
Quintin, Jean-yves; Castaing, P; Jouanneau, J. M.; Oggian, G; Chaurial, B; Gournier, N; Sautour, B; Parra, R; Bachelet, G; Leconte, M.
Monitoring n° 30 of the BLAYAIS nuclear power plant takes into account studies conducted between April and November 2007. Physicochemistry, Bathymetry, Hydrobiology, Bacteriology, Zooplankton, Benthic macrofauna, are reported.
Tipo: Text Palavras-chave: Benthic macrofauna; Zooplankton; Microbiology; Hydrology; Bathymetry; Physico chemistry; Pelagos; Monitoring; Gironde estuary; Nuclear power plant; Macrofaune benthique; Zooplancton; Microbiologie; Hydrologie; Bathymétrie; Physico chimie; Pelagos; Surveillance; Estuaire de la Gironde; Centrale nucléaire.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/rapport-5373.pdf
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A Global Plankton Diversity Monitoring Program ArchiMer
Batten, Sonia D.; Abu-alhaija, Rana; Chiba, Sanae; Edwards, Martin; Grahams, George; Jyothibabu, R.; Kitchener, John A.; Koubbis, Philippe; Mcquatters-gollop, Abigail; Muxagata, Erik; Ostle, Clare; Richardson, Anthony J.; Robinson, Karen, V; Takahashi, Kunio T.; Verheye, Hans M.; Wilson, Willie.
Plankton are the base of marine food webs, essential to sustaining fisheries and other marine life. Continuous Plankton Recorders (CPRs) have sampled plankton for decades in both hemispheres and several regional seas. CPR research has been integral to advancing understanding of plankton dynamics and informing policy and management decisions. We describe how the CPR can contribute to global plankton diversity monitoring, being cost-effective over large scales and providing taxonomically resolved data. At OceanObs09 an integrated network of regional CPR surveys was envisaged and in 2011 the existing surveys formed the Global Alliance of CPR Surveys (GACS). GAGS first focused on strengthening the dataset by identifying and documenting CPR best practices,...
Tipo: Text Palavras-chave: Continuous Plankton Recorder; Zooplankton; Phytoplankton; Global monitoring; Biodiversity; Ocean observing; Essential ocean variables.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00689/80060/83064.pdf
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Variations of zooplankton in the frontal area of the Alboran sea (Mediterranean sea) in winter 1997 ArchiMer
Youssara, F; Gaudy, R.
Zooplankton from the upper 200 m of the Almeria-Oran frontal region, (east of the Alboran sea, western Mediterranean) was sampled during winter 1997, using two nets equipped with 200 and 80 mum mesh. Eight sites representative of the different hydrodynamic structures (Mediterranean water, geostrophic Atlantic jet, associated anticyclonic gyre) were investigated over 2 d, using two day- and two night-samples per site. Zooplankton biomass was correlated to chlorophyll abundance, with lowest values in the oligotrophic Mediterranean water and highest in Atlantic water. The high biomass resulted from the enhancement of the secondary production, as indicated by the greater proportion of nauplii and the increase of zooplankton metabolism and feeding. Total...
Tipo: Text Palavras-chave: Mer d’Alboran; Distribution; Front; Zooplancton; Alboran sea; Distribution; Front; Zooplankton.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/00322/43348/42878.pdf
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Surveillance écologique du site du Blayais - année 2012 ArchiMer
Quintin, Jean-yves; Sottolichio, Aldo; Derriennic, Hervé; Schmidt, Sabine; Mallet, Céline; Roux Ducept, Alexandra; Sautour, Benoît; Parra, René; Dindinaud, François; Bachelet, Guy; Leconte, Michel.
Monitoring n° 35 of the BLAYAIS nuclear power plant takes into account studies conducted between April and November 2012. Physicochemistry, Bathymetry, Hydrobiology, Bacteriology, Zooplankton, Benthic macrofauna, are reported.
Tipo: Text Palavras-chave: Centrale nucléaire; Estuaire de la Gironde; Surveillance; Pelagos; Physico chimie; Bathymétrie; Hydrologie; Microbiologie; Zooplancton; Macrofaune benthique; Nuclear power plant; Gironde estuary; Monitoring; Pelagos; Physico chemistry; Bathymetry; Hydrology; Microbiology; Zooplankton; Benthic macrofauna.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00141/25181/23287.pdf
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Small-scale variability of zooplankton pyruvate kinase activity in the Gironde Estuary plume (Atlantic French Coast): A case study under unusually low freshwater discharge ArchiMer
Bergeron, Jean-pierre.
Pyruvate kinase (PK) activity measurements are used to assess the role of carbohydrates in global feeding of mesozooplankton communities inhabiting an estuary plume. As a consequence of a remarkably low freshwater discharge rate, the sea surface layers of the area under estuarine influence showed a very moderate salinity fall and a nearly total depletion in nitrates, whereas higher levels of these nutrients were found in deeper, more saline, layers. Small-scale PK activity variations in mesozooplankton appear to be closely correlated to nitrate integration values within the water column. The results were analysed in comparison with literature reports. The study produced a coherent overall interpretation, which strongly supports the reliability of this new...
Tipo: Text Palavras-chave: Gironde Estuary; Bay of Biscay; Pyruvate kinase; Pyruvate kinase; Carbohydrates; Zooplankton; Phytoplankton; Chlorophyll; Inorganic nutrients.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1745.pdf
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Ecotron - Embiez 7 - Evolution qualitative et quantitative du zooplancton dans les bassins de culture ArchiMer
Gaudy, R..
The qualitative and quantitative evolution of a zooplanktonic population growing in a concrete tank after enrichment and production of a phytoplanktonic bloom has been followed during a time exceeding six weeks. After an initial unsteady period and a temporary peak of rotiferas, a progressive increase of organism abundance was observed, with a corresponding re­duction of their specific diversity. During the last phase of the experiment, the zooplankton community was qualitatively similar with the populations described in harbour waters or other semi-closed or closed marine spaces characterized by eutrophy and pollution. It was chiefly composed of copepods from Acartia, Tisbe and Oithona generas. The numerical density of organisms was,to a great...
Tipo: Text Palavras-chave: Zooplancton; Culture; Physionomie des populations; Zooplankton; Culture; Population physiognomy.
Ano: 1979 URL: http://archimer.ifremer.fr/doc/00305/41671/40880.pdf
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Evolution de la biomasse et de la physiologie du zooplancton sur la côte nord de Bretagne en relation avec l'échouage de l'Amoco Cadiz : résultats préliminaires pour la période du 16 mars au 20 mai 1978 ArchiMer
Samain, Jean-francois; Le Fevre, J.; Moal, J.; Daniel, J.y.; Boucher, Jean.
First results about distribution and changes of biomass (dry weight and total soluble proteins), physiology (amylase, trypsin) and faunistic composition of zooplankton are reported for the two months period following the spill of AMOCO CADIZ on the Britany Northern coast. A shortage of biomass in the aber area is attributed to hydrocarbons. The low level of the mean value of biomasse on the North coasts, and the pecularities of estuarine station of the Lannion bay and of Trieux area are reported and discussed.
Tipo: Text Palavras-chave: Amoco Cadiz; Zooplancton; Biomasse; Physiologie; Marée noire; Amoco Cadiz; Zooplankton; Biomass; Physiology; Spill.
Ano: 1978 URL: http://archimer.ifremer.fr/doc/00306/41728/40939.pdf
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210Po and 210Pb trophic transfer within the phytoplankton–zooplankton–anchovy/sardine food web: a case study from the Gulf of Lion (NW Mediterranean Sea) ArchiMer
Strady, Emilie; Harmelin-vivien, Mireille; Chiffoleau, Jean-francois; Veron, Alain; Tronczynski, Jacek; Radakovitch, Olivier.
The transfer of 210Po and 210Pb in the food web of small pelagic fishes (from phytoplankton and zooplankton to anchovy Engraulis encrasicolus and sardine Sardina pilchardus) is investigated in the Gulf of Lion (GoL). We present original data of 210Po and 210Pb activity concentrations, C and N stable isotope ratios, measured (i) from different size classes of phytoplankton and zooplankton during spring and winter in different environments of the GoL, and (ii) in two fish species. Significant spatial patterns based on 210Po, 210Pb activity concentrations and 210Po/210Pb ratios in the different plankton size classes are evidenced by hierarchical clustering, both in spring and winter. This variability, also observed for C and N stable isotopes ratios, is...
Tipo: Text Palavras-chave: Po-210; Pb-210; Phytoplankton; Zooplankton; Pelagic fishes; Mediterranean Sea.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00255/36609/35264.pdf
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Environmental control of mesozooplankton community structure in the Seine estuary (English Channel) ArchiMer
Mouny, P; Dauvin, Jc.
This paper is the first to describe the spatio-temporal changes of mesozooplankton in the Seine estuary. Monthly samples were collected along the estuary in 1996 in order to analyse the seasonal changes of the mesozooplankton community and to identify the major environmental parameters that may influence the spatial distribution of zooplankton in this megatidal estuary. Statistical analysis (canonical correspondence analysis) showed that salinity was the main factor correlated with the longitudinal distribution of zooplankton. Marine species (Temora longicornis, barnacle larvae...) were located in the outer part of the estuary, while more oligohaline species (Eurytemora affinis) were recorded in the inner part of the estuary. A mixed zone was characterised...
Tipo: Text Palavras-chave: Zooplancton; Eurytemora affinis; Cycle annuel; Facteurs environnementaux; Estuaire de la Seine; Zooplankton; Eurytemora affinis; Annual cycle; Environmental parameters; Seine estuary.
Ano: 2002 URL: http://archimer.ifremer.fr/doc/00322/43325/42929.pdf
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First record of a Marteilia parasite (Paramyxea) in zooplankton populations from a natural estuarine environment ArchiMer
Carrasco, Noelia; Lopez, Immaculada; Alcaraz, M; Furones, M. Dolores; Berthe, Franck; Arzul, Isabelle.
The life cycle of the species forming the genus Marteilia (Phylum Paramyxea), which are marine protozoan parasites of molluscs, is still poorly known, although there is evidence of the need for intermediate hosts. To date, only the calanoid copepod Acartia (Paracartia) grani has been demonstrated to be involved in the life cycle of the parasite infecting flat oysters growing in ponds with a low biodiversity. However, no complex natural environments, such as bays or estuaries, have been studied for a similar purpose. Therefore, a survey for the presence of the protozoan Marteilia was conducted by PCR on the zooplankton community of a natural ecosystem, the Alfacs and Fangar bays in the Delta de l'Ebre (NW Mediterranean). Identification of zooplankton...
Tipo: Text Palavras-chave: Zooplankton; Harpaticoida sp.; Oithona sp.; Mollusc parasite; Life cycle; Marteilia.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3050.pdf
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The ZooCAM, a new in-flow imaging system for fast onboard counting, sizing and classification of fish eggs and metazooplankton ArchiMer
Colas, Florent; Tardivel, Morgan; Perchoc, Jonathan; Lunven, Michel; Forest, Bertrand; Guyader, Gerard; Danielou, Marie-madeleine; Le Mestre, Sophie; Bourriau, Paul; Antajan, Elvire; Sourisseau, Marc; Huret, Martin; Petitgas, Pierre; Romagnan, Jean-baptiste.
In this paper we present the ZooCAM, a system designed to digitize and analyse on board large volume samples of preserved and living metazooplankton (i.e. multicellular zooplankton) and fish eggs > 300 µm ESD. The ZooCAM has been specifically designed to overcome the difficulties to analyse zooplankton and fish eggs in the framework of the PELGAS survey, and provide high frequency data. The ZooCAM fish eggs counts were comparable to those done with a dissecting microscope. The ZooCAM enabled the accurate prediction and fast on board validation of staged anchovy and sardine eggs in almost real time after collection. A comparison with the ZooScan, on a more complex zooplanktonic community, provided encouraging results on the agreement between the 2...
Tipo: Text Palavras-chave: ZooCAM; In-flow imaging; Fish eggs; Zooplankton; Ecosystemic survey.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00407/51833/52432.pdf
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Connectivity patterns of anchovy larvae in the Bay of Biscay from a coupled transport-bioenergetic model forced by size-structured zooplankton ArchiMer
Huret, Martin; Vandromme, Pieter; Petitgas, Pierre; Pecquerie, Laure.
Connectivity during early life stages of pelagic fish, defined here by survival probability between spawning and early juvenile habitats, depends on a combination of sufficient food availability and low predator encounter along drift trajectories. For anchovy in the Bay of Biscay, larval transport experiments throughout the spawning season suggest accumulation of early juveniles in the offshore area of the southern Bay, as well as retention over the mid-shelf at mid-latitude. However, late summer-early autumn surveys suggest presence of juveniles only in the former region. From this observation, we set up a bioenergetic individual based model to test for the effect of food availability on survival patterns. The model couples a Lagrangian transport module...
Tipo: Text Palavras-chave: Connectivity; Larval IBM; Bioenergetics; Zooplankton; Bay of Biscay; European anchovy.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00105/21655/19237.pdf
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Variations of zooplankton metabolism and feeding in the frontal area of the Alboran Sea (western Mediterranean) in winter ArchiMer
Gaudy, R; Youssara, F.
Respiration, excretion (NH4 and PO4) and feeding of zooplankton from the upper 200 m of the Almeria-Oran frontal region (western Mediterranean), were studied during winter 1997. Eight sites belonging to the three main hydrodynamic structures of the area (Mediterranean water, geostrophic Atlantic jet and associated anticyclonic gyre) were considered. Lowest values of respiration, PO4 excretion, O/P atomic ratio and particle ingestion were found in Mediterranean waters. At the frontal limit, respiration and ammonium excretion were enhanced compared to the adjacent structures (Mediterranean water and Atlantic jet). In the gyre water, lowest O/N and highest N/P values were observed and maximum faecal pellet production and reproduction activity (inferred from...
Tipo: Text Palavras-chave: Mer d'Alboran; Front; Zooplancton; Métabolisme; Nutrition; Alboran sea; Front; Zooplankton; Metabolism; Feeding.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/00322/43275/43006.pdf
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PCB concentrations in plankton size classes, a temporal study in Marseille Bay, Western Mediterranean Sea ArchiMer
Tiano, Marion; Tronczynski, Jacek; Harmelin-vivien, Mireille; Tixier, Celine; Carlotti, Francois.
PCB levels in plankton were investigated in the Bay of Marseille, Western Mediterranean Sea, between September 2010 and October 2011. Concentrations of PCB congeners (CB 18, CB 52, CB 101, CB 118, CB 138, CB 153, CB 180) were determined in three plankton size-classes (60–200, 200–500 and 500–1000 μm) together with different parameters: chlorophyll content, plankton dry-weight biomass, carbon and nitrogen stable isotope ratios and plankton-community structure. The ∑PCB7 concentrations ranged between 14.2 and 88.1 ng g−1 d.w., for all size classes and all sampling periods. The results do not show the biomass dilution effect and indicate moderate but significant biomagnification with plankton trophic position estimated by δ15N signatures. Equilibrium with...
Tipo: Text Palavras-chave: PCBs; Phytoplankton; Zooplankton; Bioaccumulation; Coastal; Bay of Marseille.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00218/32881/31371.pdf
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