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Santa Maria di Leuca Province (Mediterranean Sea): Identification of Suitable Mounds for Cold-Water Coral Settlement Using Geomorphometric Proxies and Maxent Methods ArchiMer
Bargain, Annaelle; Marchese, Fabrice; Savini, Alessandra; Taviani, Marco; Fabri, Marie-claire.
The Santa Maria di Leuca (SML) cold-water coral province (northern Ionian Sea) has the largest occurrence of a living white coral community currently known in the Mediterranean Sea. Madrepora oculata and Lophelia pertusa, identified as marking sensitive habitats of relevance by the General Fisheries Commission for the Mediterranean, have been observed heterogeneously distributed on the summits of several mounds. This particularly patchy and uneven distribution in addition to their importance for regional biodiversity highlights the need to better understand their environmental preferences and predict their distribution. Bathymetric data (40 m resolution) was used to derive seafloor characteristics. A fine scale index quantifying the landscape elevation...
Tipo: Text Palavras-chave: Predictive habitat mapping; Maxent; Cold-water coral; Ecological proxies; Santa Maria di Leuca; Mediterranean Sea.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00407/51826/52418.pdf
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Rôle de l’apport atmosphérique sur les processus de biodégradation et la stoechiométrie de la matière organique dissoute en mer Méditerranée ArchiMer
Djaoudi, Kahina.
Establishing a link between atmospheric deposition and the dissolved organic matter (DOM) pool in the Mediterranean Sea is currently hampered by: (1) a poor knowledge on the surface dissolved phosphate (P) pool, mainly due to low concentrations of dissolved inorganic phosphate (DIP), (2) a critical lack of data on atmospheric fluxes of organic C, N and P and (3) the lack of information on their bioavailability. This PhD thesis aimed at filling these gaps. (1) Relying upon a sensitive determination of DIP, the coverage of the valid dissolved organic phosphate data was enhanced up to 70%, revealing a vertical pattern in the dissolved phosphate biogeochemistry in surface waters. (2) Atmospheric fluxes of soluble organic C, N and P were quantified and were 59...
Tipo: Text Palavras-chave: Dépôt atmosphérique; Matière organique dissoute; Rapports C:N:P; Nutriments; Mer Méditerranée; Biodisponibilité.; Atmospheric deposition; Dissolved organic matter; C:N:P ratios; Nutrients; Mediterranean Sea; Bioavailability.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00677/78944/81332.pdf
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Preparing the New Phase of Argo: Scientific Achievements of the NAOS Project ArchiMer
Le Traon, Pierre-yves; D'Ortenzio, Fabrizio; Babin, Marcel; Leymarie, Edouard; Marec, Claudie; Pouliquen, Sylvie; Thierry, Virginie; Cabanes, Cecile; Claustre, Hervé; Desbruyeres, Damien; Lacour, Leo; Lagunas, Jose-luis; Maze, Guillaume; Mercier, Herle; Penkerc'H, Christophe; Poffa, Noe; Poteau, Antoine; Prieur, Louis; Racape, Virginie; Randelhoff, Achim; Rehm, Eric; Schmechtig, Catherine Marie; Taillandier, Vincent; Wagener, Thibaut; Xing, Xiaogang.
Argo, the international array of profiling floats, is a major component of the global ocean and climate observing system. In 2010, the NAOS (Novel Argo Observing System) project was selected as part of the French “Investissements d’Avenir” Equipex program. The objectives of NAOS were to consolidate the French contribution to Argo’s core mission (global temperature and salinity measurements down to 2000 m), and also to develop the future generation of French Argo profiling floats and prepare the next phase of the Argo program with an extension to the deep ocean (Deep Argo), biogeochemistry (BGC-Argo) and polar seas. This paper summarizes how NAOS has met its objectives. The project significantly boosted France’s contribution to Argo’s core mission by...
Tipo: Text Palavras-chave: Profiling floats; Deep ocean; Biogeochemistry; Mediterranean Sea; Arctic; Atlantic; Argo.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00654/76584/77729.pdf
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Influence of shellfish farming activities on nitrification, nitrate reduction to ammonium and denitrification at the water-sediment interface of the Thau lagoon, France ArchiMer
Gilbert, F; Souchu, Philippe; Bianchi, M; Bonin, P.
The seasonal patterns of nitrification, denitrification and dissimilatory ammonium production (DAP) rates were studied in the sediment of 2 stations in the Thau lagoon (south of France). The station ZA was located within the shellfish farming zone and the station B was the reference site. A marked effect of shellfish fanning on bacterial activities was observed. Spatial differences were associated with discrepancies in the organic content and the reduction state of sediments, i.e. highest reductive processes (denitrification and DAP) were noted in shellfish farming area, whereas the oxidative process (nitrification) was predominant outside the farming zone. At both stations, the DAP activity increased in September (autumn) concomitant with an increase of...
Tipo: Text Palavras-chave: Shellfish farming; Nitrogen bacterial processes; Nitrification; Nitrate reduction to ammonium; Denitrification; Thau lagoon; Mediterranean Sea; Sediment-water exchanges.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00070/18145/15697.pdf
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Feeding ecology and trophic position of three sympatric demersal chondrichthyans in the northwestern Mediterranean ArchiMer
Albo-puigserver, Marta; Navarro, Joan; Coll, Marta; Aguzzi, Jacopo; Cardona, Luis; Saez-liante, Raquel.
Understanding how marine predators interact is a scientific challenge. In marine ecosystems, segregation in feeding habits has been largely described as a common mechanism to allow the coexistence of several competing marine predators. However, little is known about the feeding ecology of most species of chondrichthyans, which play a pivotal role in the structure of marine food webs worldwide. In this study, we examined the trophic ecology of 3 relatively abundant chondrichthyans coexisting in the Mediterranean Sea: the blackmouth catshark Galeus melastomus, the velvet belly lanternshark Etmopterus spinax and the rabbit fish Chimaera monstrosa. To examine their trophic ecology and interspecific differences in food habits, we combined the analysis of...
Tipo: Text Palavras-chave: Feeding niche; Isotope analysis; Mediterranean Sea; Galeus melastomus; Etmopterus spinax; Chimaera monstrosa.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00266/37721/73392.pdf
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Spatio-temporal organization patterns of demersal assemblages of the east coast of Corsica (Mediterranean Sea) ArchiMer
Gaertner, Jean-claude; Bertrand, Jacques; Samani, D; Souplet, Arnauld.
The paper deals with the spatio-temporal organization patterns demersal assemblages along the east coast of Corsica. We analysed data collected by the first standardized experimental bottom trawl surveys performed in this region from 1994 to 1999 (MEDITS programme). The use of a multiway table method (STATIS-CoA) showed that the spatial organization pattern of the demersal assemblages of eastern Corsica was highly stable during the period studied. This pattern was structured around three bathymetric areas (i) the continental shelf (between 50 to 200 m depth), (ii) the upper slope (from 200 to 500 m) and (iii) the deeper slope (from 500 to 800 m), but it did not show any heterogeneity in relation with latitude. Along the cast coast of Corsica-characterized...
Tipo: Text Palavras-chave: Corsica; Mediterranean Sea; Stability; Multiway table analysis; Trawl surveys; Fish assemblages; Spatial structures.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-692.pdf
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Space invaders; biological invasions in marine conservation planning ArchiMer
Giakoumi, Sylvaine; Guilhaumon, Francois; Kark, Salit; Terlizzi, Antonio; Claudet, Joachim; Felline, Serena; Cerrano, Carlo; Coll, Marta; Danovaro, Roberto; Fraschetti, Simonetta; Koutsoubas, Drosos; Ledoux, Jean-batiste; Mazor, Tessa; Merigot, Bastien; Micheli, Fiorenza; Katsanevakis, Stelios.
AimBiological invasions are major contributors to global change and native biodiversity decline. However, they are overlooked in marine conservation plans. Here, we examine for the first time the extent to which marine conservation planning research has addressed (or ignored) biological invasions. Furthermore, we explore the change of spatial priorities in conservation plans when different approaches are used to incorporate the presence and impacts of invasive species. LocationGlobal analysis with a focus on the Mediterranean Sea region. MethodsWe conducted a systematic literature review consisting of three steps: (1) article selection using a search engine, (2) abstract screening and (3) review of pertinent articles, which were identified in the second...
Tipo: Text Palavras-chave: Alien species; Biological invasions; Conservation planning; Impacts; Management actions; Marine biogeographic regions; Marine protected areas; Mediterranean Sea.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00359/47001/74196.pdf
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Monitoring and Assessment guidelines for Marine Litter in Mediterranean MPAs ArchiMer
Galgani, Francois; Deidun, Alan; Liubartseva, Svitlana; Gauci, Adam; Doronzo, Bartholomeo; Brandini, Carlo; Gerigny, Olivia.
As part of the AMARE project, the main purpose of this report is to provide advice and practical guidance, for establishing programmes to monitor and assess the distribution and abundance of marine litter in MPAs. The present document build on relevant existing monitoring and assessment practices in the Mediterranean, such as the existing monitoring practices in UNEP/MAP and within the Marine Strategy Framework Directive. The proposed strategy (defining the sampling scheme, the environmental compartment to monitor and the protocols to be used) is also based on recommendations of the UN GESAMP report on monitoring marine litter (GESAMP, 2019). In addition, it is based on the experience of ongoing monitoring and assessment activities under various scientific...
Tipo: Text Palavras-chave: Marine Litter; Mediterranean Sea; Marine protected areas; Monitoring.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00487/59840/62987.pdf
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ROSACE: A Proposed European Design for the Copernicus Ocean Colour System Vicarious Calibration Infrastructure ArchiMer
Antoine, David; Vellucci, Vincenzo; Banks, Andrew C.; Bardey, Philippe; Bretagnon, Marine; Bruniquel, Véronique; Deru, Alexis; Hembise Fanton D’andon, Odile; Lerebourg, Christophe; Mangin, Antoine; Crozel, Didier; Victori, Stéphane; Kalampokis, Alkiviadis; Karageorgis, Aristomenis P.; Petihakis, George; Psarra, Stella; Golbol, Melek; Leymarie, Edouard; Bialek, Agnieszka; Fox, Nigel; Hunt, Samuel; Kuusk, Joel; Laizans, Kaspars; Kanakidou, Maria.
The European Copernicus programme ensures long-term delivery of high-quality, global satellite ocean colour radiometry (OCR) observations from its Sentinel-3 (S3) satellite series carrying the ocean and land colour instrument (OLCI). In particular, the S3/OLCI provides marine water leaving reflectance and derived products to the Copernicus marine environment monitoring service, CMEMS, for which data quality is of paramount importance. This is why OCR system vicarious calibration (OC-SVC), which allows uncertainties of these products to stay within required specifications, is crucial. The European organisation for the exploitation of meteorological satellites (EUMETSAT) operates the S3/OLCI marine ground segment, and envisions having an SVC infrastructure...
Tipo: Text Palavras-chave: Satellite ocean colour; System vicarious calibration; Fiducial reference measurements; Radiometry; SI-traceability; Uncertainty budget; Mediterranean Sea; BOUSSOLE; MSEA.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00629/74136/73601.pdf
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Does phosphate adsorption onto Saharan dust explain the unusual N/P ratio in the Mediterranean Sea? ArchiMer
Ridame, C; Moutin, T; Guieu, C.
A Saharan soil, considered as a proxy for Saharan aerosols, was used to perform radio-labelled phosphate adsorption experiments using (33)PO(4)(3-): leached particles were exposed to poisoned western Mediterranean seawater for varying lengths of time. The measured adsorption capacity of Saharan dust for phosphate was 0.13 mumol g(-1). Considering this value and an annual Saharan dust deposition of 12.5 t km(-2) year(-1), we show that Saharan particles do not represent a significant sink for seawater phosphate in the western Mediterranean Sea. This result is in agreement with that determined from a similar approach conducted in the eastern basin. As a consequence, the unusual NIP ratio measured in the whole Mediterranean Sea (up to 29) cannot be explained...
Tipo: Text Palavras-chave: Poussières sahariennes; Adsorption; Phosphate; Rapport N/P; Méditerranée; Saharan dust; Adsorption; Phosphate; N/P ratio; Mediterranean Sea.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/00321/43254/42985.pdf
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Modelling the accumulation of PSP toxins in Thau Lagoon oysters (Crassostrea gigas) from trials using mixed cultures of Alexandrium catenella and Thalassiosira weissflogii ArchiMer
Lassus, Patrick; Amzil, Zouher; Baron, Regis; Sechet, Veronique; Barille, Laurent; Abadie, Eric; Bardouil, Michele; Sibat, Manoella; Truquet, Philippe; Berard, Jean-baptiste; Gueguen, Marielle.
In October and November 2003 a bloom of the toxic dinoflagellate Alexandrium catenella was observed in the North-east zone of Thau lagoon (French Mediterranean coast). Sea water samples were collected every hours to evaluate time-related variations of phytoplankton concentrations and to compare the relative ratio of A. catenella versus other phytoplankton species during the outbreak. From these observations, trials using recirculated sea water systems were performed to: i) evaluate the physiological effects on oyster of increasing proportions of A. catenella within a mixed microalgal diet where the non-toxic diatom Thalassiosira weissflogii was present at concentration: 1500 cells ml(-1), ii) compare the effect of two temperatures (12 degrees C and 18...
Tipo: Text Palavras-chave: Mediterranean Sea; Alexandrium catenella; Toxin content; Model; Crassostrea gigas; Paralytic shellfish poisoning.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-2624.pdf
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Marine pollution: Let us not forget beach sand ArchiMer
Galgani, Francois; Ellerbrake, Katrin; Fries, Elke; Goreux, Chantal.
Background: Assessing the chemical or bacterial contamination in marine waters and sediments is a very common approach to evaluate marine pollution and associated risks. However, toxicity and organic pollution of beach sands have not yet been considered, except in adjacent waters. In the present study, the toxicity and the chemical contamination of natural beach sands collected 20 m from the shoreline at two sites located on the Mediterranean Sea (Marseille and La Marana, Corsica) were studied. Results: Up to 16.93% (net percentage) abnormal or dead larvae was observed in elutriates prepared from the urban beach sand sample (Marseille); no significant toxicity was observed in the sample collected from the reference beach in La Marana. Results of Fourier...
Tipo: Text Palavras-chave: Oyster larvae biotests; Sediments; Infrared spectroscopy; Gas chromatography-mass spectrometry; Microplastics; Polycyclic aromatic hydrocarbons; Mediterranean Sea; Bioavailability; Organic contaminants.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00353/46442/46186.pdf
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ProVal: A New Autonomous Profiling Float for High Quality Radiometric Measurements ArchiMer
Leymarie, Edouard; Penkerc'H, Christophe; Vellucci, Vincenzo; Lerebourg, Christophe; Antoine, David; Boss, Emmanuel; Lewis, Marion R.; D'Ortenzio, Fabrizio; Claustre, Herve.
An efficient system to produce in situ high quality radiometric measurements is compulsory to rigorously perform the vicarious calibration of satellite sensors dedicated to Ocean Color Radiometry (OCR) and to validate their derived products. This requirement is especially needed during the early stages of an OCR satellite activity or for remote areas poorly covered by oceanographic cruises with possible bio-optical anomalies. Taking advantage of Argo's profiling float technology, we present a new autonomous profiling float dedicated to in situ radiometric measurements. The float is based on the Provor CTS5 (manufacturer NKE) with an added novel two protruding arm design allowing for sensor redundancies, shading mitigation and near-surface data. Equipped...
Tipo: Text Palavras-chave: Autonomous profiling floats; Remote sensing reflectance; Ocean color; Validation; System vicarious calibration; Austral ocean; Mediterranean Sea; Radiometric measurement.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00585/69694/67579.pdf
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Shallow rocky bottom benthic assemblages as calcium carbonate producers in the Alboran Sea (southwestern Mediterranean) ArchiMer
Cebrian, E; Ballesteros, E; Canals, M.
Zonation patterns and species composition of the different assemblages encountered along the bathymetric axis are considered in order to quantify the biomass and calcium carbonate content of communities thriving in rocky bottoms of La Herradura (southwestern Mediterranean) between 0 and 50 m depth. Algal biomass is lower but total biomass is slightly higher to values recorded in other Mediterranean areas due to the high biomass of suspension feeders. Since most of the animals and algae with high biomass have calcareous skeletons, the calcimass is rather high (1 100 to 2400 g . CaCO3.m(-2)) when compared to other temperate and Mediterranean sites. A tentative estimate of yearly carbonate production yields 1 000 g . CaCO3.m(-2).y(-1) for the rocky bottoms of...
Tipo: Text Palavras-chave: Carbonate; Fonds rocheux; Communautés benthiques; Production; Mer Méditerranée; Calcium carbonate; Rocky bottoms; Benthic assemblages; Production; Mediterranean Sea.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00324/43565/44062.pdf
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Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus) ArchiMer
Dalongeville, Alicia; Benestan, Laura; Mouillot, David; Lobreaux, Stephane; Manel, Stephanie.
Background: Adaptive genomics may help predicting how a species will respond to future environmental changes. Genomic signatures of local adaptation in marine organisms are often driven by environmental selective agents impacting the physiology of organisms. With one of the highest salinity level, the Mediterranean Sea provides an excellent model to investigate adaptive genomic divergence underlying salinity adaptation. In the present study, we combined six genome scan methods to detect potential genomic signal of selection in the striped red mullet (Mullus surmuletus) populations distributed across a wide salinity gradient. We then blasted these outlier sequences on published fish genomic resources in order to identify relevant potential candidate genes...
Tipo: Text Palavras-chave: Adaptive genomics; Genome scan; Candidate genes; Mediterranean Sea; Mullus surmuletus; Salinity.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00438/54992/75081.pdf
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Characterizing, modelling and understanding the climate variability of the deep water formation in the North-Western Mediterranean Sea ArchiMer
Somot, Samuel; Houpert, Loic; Sevault, Florence; Testor, Pierre; Bosse, Anthony; Taupier-letage, Isabelle; Bouin, Marie-noelle; Waldman, Robin; Cassou, Christophe; Sanchez-gomez, Emilia; Durrieu De Madron, Xavier; Adloff, Fanny; Nabat, Pierre; Herrmann, Marine.
Observing, modelling and understanding the climate-scale variability of the deep water formation (DWF) in the North-Western Mediterranean Sea remains today very challenging. In this study, we first characterize the interannual variability of this phenomenon by a thorough reanalysis of observations in order to establish reference time series. These quantitative indicators include 31 observed years for the yearly maximum mixed layer depth over the period 1980–2013 and a detailed multi-indicator description of the period 2007–2013. Then a 1980–2013 hindcast simulation is performed with a fully-coupled regional climate system model including the high-resolution representation of the regional atmosphere, ocean, land-surface and rivers. The simulation reproduces...
Tipo: Text Palavras-chave: Deep water formation; Open-sea deep convection; Interannual variability; Mediterranean Sea; Regional climate models; Climate trends.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00348/45948/45654.pdf
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Habitat suitability modelling for sardine juveniles (Sardina pilchardus) in the Mediterranean Sea ArchiMer
Giannoulaki, Marianna; Pyrounaki, Maria M.; Liorzou, Bernard; Leonori, Iole; Valavanis, Vasilis D.; Tsagarakis, Konstantinos; Bigot, Jean-louis; Roos, David; De Felice, Andrea; Campanella, Fabio; Somarakis, Stylianos; Arneri, Enrico; Machias, Athanassios.
Identification of potential juvenile grounds of short-lived species such as European sardine (Sardina pilchardus) in relation to the environment is a crucial issue for effective management. In the current work, habitat suitability modelling was applied to acoustic data derived from both the western and eastern part of the Mediterranean Sea. Early summer acoustic data of sardine juveniles were modelled using generalized additive models along with satellite environmental and bathymetry data. Selected models were used to construct maps that exhibit the probability of presence in the study areas, as well as throughout the entire Mediterranean basin, as a measure of habitat adequacy. Areas with high probability of supporting sardine juvenile presence...
Tipo: Text Palavras-chave: Generalized additive models; Habitat suitability modelling; Mediterranean Sea; Potential juvenile habitat; Sardine juveniles; Small pelagic fish.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00043/15390/12822.pdf
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Diet, feeding behaviour and trophic activity of the anchovy (Engraulis encrasicolus L.) in the Gulf of Lions (Mediterranean Sea) ArchiMer
Plounevez, Serge; Champalbert, Gisèle.
Feeding behaviour of adult European anchovy (Engraulis encrasicolus) was studied in the Gulf of Lions (northwestern Mediterranean Sea) in relation to major abiotic and biotic factors. Observations were made during the main spawning period (summer) for two years, data were collected through hydrological pro-tiling, zooplankton hauls and fish trawling performed in areas of high anchovy density. Temperature, salinity and zooplankton biomass were stratified in the study areas, with cladocerans numerous above the thermocline whereas copepods were dominant below. Engraulis encrasicolus was strictly zooplanctivorous during the main spawning season with copepod and crustacean larvae dominating in stomach contents. Anchovy exhibited high trophic activity during the...
Tipo: Text Palavras-chave: Anchois; Alimentation; Zooplancton; Reproduction; Méditerranée; Anchovy; Feeding; Zooplankton; Spawning; Mediterranean Sea.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00301/41263/40455.pdf
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Co-occurring nematodes and bacteria in submarine canyon sediments ArchiMer
Rzeznik-orignac, Jadwiga; Puisay, Antoine; Derelle, Evelyne; Peru, Erwan; Le Bris, Nadine; Galand, Pierre E..
In submarine canyon sediments, bacteria and nematodes dominate the benthic biomass and play a key role in nutrient cycling and energy transfer. The diversity of these communities remains, however, poorly studied. This work aims at describing the composition of bacteria and nematode communities in the Lacaze-Duthiers submarine canyon in the north-western Mediterranean Sea. We targeted three sediment depths for two consecutive years and investigated the communities using nuclear markers (18S rRNA and 16S rRNA genes). High throughput sequencing combined to maximal information coefficient (MIC) statistical analysis allowed us to identify, for the first time, at the same small scale, the community structures and the co-occurrence of nematodes and bacteria...
Tipo: Text Palavras-chave: Bacteria; Meiofauna; Canyon Lacaze-Duthiers; Metabarcording; Molecular approach; Mediterranean Sea; Nematodes; Marine biodiversity; 18S; 16S.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00454/56586/76447.pdf
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Barriers in the pelagic: population structuring of Calanus helgolandicus and C. euxinus in European waters Naturalis
Yebra, L.; Bonnet, D.; Harris, R.P.; Lindeque, P.K.; Peijnenburg, K.T.C.A..
Molecular studies of marine plankton have shown that ecological and/or environmental barriers play an important role in separating populations. Calanoid copepods are central in marine ecosystems, and dramatic biogeographical shifts in copepod assemblages associated with recent climate warming have been reported. We examined spatial population structuring in European waters of the Atlantic Ocean and Mediterranean Sea of Calanus helgolandicus and its sister species, C. euxi nus, from the Black Sea based on genetic and morphometric characters. The aims were to identify barriers to dispersal, relate these to hydrographic characteristics and infer historical patterns of distribution and demography. We analysed a 408 bp fragment of the mitochondrial 16S gene...
Tipo: Article / Letter to the editor Palavras-chave: Calanus helgolandicus; Calanus euxinus; 16S rDNA; Mediterranean Sea; North Atlantic Ocean; Black Sea; 42.74.
Ano: 2011 URL: http://www.repository.naturalis.nl/record/470574
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