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Suitability of dysphonia measurements for telemonitoring of Parkinson’s disease Nature Precedings
Max A. Little; Patrick E. McSharry; Eric J. Hunter; Jennifer Spielman; Lorraine O. Ramig.
We present an assessment of the practical value of existing traditional and non-standard measures for discriminating healthy people from people with Parkinson?s disease (PD) by detecting dysphonia. We introduce a new measure of dysphonia, Pitch Period Entropy (PPE), which is robust to many uncontrollable confounding effects including noisy acoustic environments and normal, healthy variations in voice frequency. We collected sustained phonations from 31 people, 23 with PD. We then selected 10 highly uncorrelated measures, and an exhaustive search of all possible combinations of these measures finds four that in combination lead to overall correct classification performance of 91.4%, using a kernel support vector machine. In conclusion, we find that...
Tipo: Manuscript Palavras-chave: Neuroscience; Bioinformatics.
Ano: 2008 URL: http://precedings.nature.com/documents/2298/version/1
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Complex Systems Analysis of Arrested Neural Cell Differentiation during Development and Analogous Cell Cycling Models in Carcinogenesis Nature Precedings
V. I. Prisecaru; I C. Baianu.
A new approach to the modular, complex systems analysis of nonlinear dynamics of arrested neural cell Differentiation--induced cell proliferation during organismic development and the analogous cell cycling network transformations involved in carcinogenesis is proposed. Neural tissue arrested differentiation that induces cell proliferation during perturbed development and Carcinogenesis are complex processes that involve dynamically inter-connected biomolecules in the intercellular, membrane, cytosolic, nuclear and nucleolar compartments. Such 'dynamically inter-connected' biomolecules form numerous inter-related pathways referred to as 'molecular networks'. One such family of signaling pathways contains the cell...
Tipo: Manuscript Palavras-chave: Biotechnology; Cancer; Chemistry; Developmental Biology; Genetics & Genomics; Molecular Cell Biology; Neuroscience; Bioinformatics.
Ano: 2012 URL: http://precedings.nature.com/documents/7101/version/2
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Where is the ‘Jennifer Aniston neuron’? Nature Precedings
Dorian Aur.
It is generally believed that spike timing features (firing rate, ISI) are the main characteristics that can be related to neural code. Contrary to this common belief, spike directivity, a new measure that quantifies transient charge density dynamics within action potentials (APs) provides better results in discriminating different categories of visual object recognition. Specifically, intracranial recordings from medial temporal lobe (MTL) of epileptic patients have been analyzed using firing rate, interspike intervals and spike directivity. A comparative statistical analysis of the same spikes from four selected neurons shows that electrical micro-mapped features in neurons display higher separability to input images compared to spike timing features. If...
Tipo: Manuscript Palavras-chave: Neuroscience.
Ano: 2010 URL: http://precedings.nature.com/documents/5345/version/2
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PrionOme: A database of prions and other sequences relevant to prion phenomena Nature Precedings
Djamel Harbi; Marimuthu Parthiban; Deena Gendoo; Sepehr Ehsani; Manish Kumar; Gerold Schmitt-Ulms; Ramanathan Sowdhamini; Paul M. Harrison.
Prions are units of propagation of an altered state of a protein or proteins. Prions can propagate from cell to cell, and from organism to organism, through cooption of other protein copies. Prions contain no necessary nucleic acids, and are important both as both pathogenic agents, and as a potential force in epigenetic phenomena. The original prions were derived from a misfolded form of the mammalian Prion Protein PrP. Infection by these prions causes neurodegenerative diseases. Other prions cause non-Mendelian inheritance in budding yeast, and sometimes act as diseases of yeast. We have compiled a database of >2000 prion-related sequences, called the PrionOme. The database comprises seven PrionOme classification categories: prionogenic...
Tipo: Manuscript Palavras-chave: Neuroscience; Bioinformatics.
Ano: 2011 URL: http://precedings.nature.com/documents/6430/version/1
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Local statistics in natural scenes predict the saliency of synthetic textures Nature Precedings
Gasper Tkacik; Jason S. Prentice; Jonathan D. Victor; Vijay Balasubramanian.
To represent behaviorally relevant information efficiently, neural circuits in sensory periphery are matched to the first and second-order statistical structure of natural inputs. The retina, for example, removes stimulus components that are predictable (and therefore uninformative), and transmits what is unpredictable (and therefore informative). Here we show that this efficient coding principle applies to complex aspects of natural scenes, and to central visual processing (Tkačik et al, PNAS 2010). 

The aspect of natural scenes that we examine in detail is texture in image patches. Texture is determined partly by the distribution of light intensities and partly by the spatial organization of light across...
Tipo: Poster Palavras-chave: Neuroscience.
Ano: 2011 URL: http://precedings.nature.com/documents/6009/version/1
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Up-expression of GAD65 in the Amygdala of the Rat Model of Chroric Immobilization Stress with Elevated Blood Glucose Nature Precedings
Xiao-Jing Li; Wei Zhang; Bing Liang; Xiang Zheng; Xue Zhou.
It is believed that the hypothalamus is the regulating center for blood glucose levels, but how chronic stress leads to hyperglycemia is not known. In this experiment, we use the chronic immobilization stressed rat as a model, and found that only rats with increased expression of GAD65 in the amygdala have an elevated level of blood glucose. Considering there are fiber tracks between the amygdala and hypothalamus, including GABAergic projections, this result suggests that the changes in GAD65 expression in the amygdala may correlate with the changes in blood glucose levels, and point to the importance of the the amygdala in blood glucose regulation.
Tipo: Manuscript Palavras-chave: Neuroscience.
Ano: 2011 URL: http://precedings.nature.com/documents/5885/version/1
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Range-based techniques for discovering optimality and analyzing scaling relationships in neuromechanical systems Nature Precedings
Bradly J. Alicea.
In this paper, a method for decoupling the neuromuscular function of a set of limbs from the role morphology plays in regulating the performance of an activity is introduced. This method is based on two previous methods: the rescaled range analysis specific to time series data, and the use of scaling laws. A review of the literature suggests that limb geometry can either facilitate or constrain performance as measured experimentally. Whether limb geometry is facilitatory or acts as a constraint depends on the size differential between arm morphology and the underlying muscle. "Changes in size and shape" are theoretically extrapolations of morphological geometry to other members of a population or species, to other species, or to...
Tipo: Manuscript Palavras-chave: Neuroscience; Bioinformatics.
Ano: 2009 URL: http://precedings.nature.com/documents/2845/version/1
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Capsaicin protects neuromuscular junctions from the inhibitory effects of botulinum neurotoxin A Nature Precedings
Baskaran Thyagarajan; Carmen Garcia; Joseph Potian; Natalia Krivitskaya; Kormakur Hognason; Joseph McArdle.
Within 24 hrs after injecting botulinum neurotoxin A (BoNT/A) into the hindlimb, mice lost the toe spread reflex and developed progressive muscle weakness. At the same time, the compound muscle action potential amplitude decreased. Injection of capsaicin before BoNT/A significantly reduced these affects and protected the muscle twitch tension of the Extensor digitorum longus (EDL) nerve muscle preparation. Acute in vitro exposure of isolated nerve muscle preparations, as well as Neuro 2a cells, to capsaicin prevented uptake of Alexa 647 BoNT/A. Motor nerve endings as well as Neuro 2a cells express the capsaicin receptor, a transient receptor potential channel of the vanilloid family (TRPV1). Capsaicin as well as disruption of clathrin coated pits (CCPs)...
Tipo: Manuscript Palavras-chave: Neuroscience; Pharmacology.
Ano: 2008 URL: http://precedings.nature.com/documents/2717/version/1
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The Predominance of Electric Transport in Synaptic Transmission Nature Precedings
Hamid Reza Noori.
The quantitative description of the motion of neurotransmitters in the synaptic cleft appears to be one of the most difficult problems in the modeling of synapses. Here we show in contradiction to the common view, that this process is merely governed by electric transport than diffusion forces.
Tipo: Manuscript Palavras-chave: Neuroscience.
Ano: 2009 URL: http://precedings.nature.com/documents/2304/version/2
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Alzheimer's disease is TH17 related autoimmune disease against misfoded beta amyloid Nature Precedings
Wan-Jiung(Wan-Chung) Hu.
Alzheimer's disease is a common neurodegenerative disorder. However, its exact etiology is still unknown. There were several mechanisms proposed such as the tau hypothesis and amyloid hypothesis. However, there is evidence challenging the above two hypotheses. Here, I propose the immune-amyloid hypothesis as a mechanism for Alzheimer's disease. Th17 related autoimmunity contributes to the disease pathogenesis. Accumulation of misfolded beta amyloid can trigger heat shock protein which in turn induces TH17 immunity. By microarray analysis of peripheral blood mononuclear cells, there is up-regulation of many TH17 related molecules after Alzheimer's disease. After knowing the exact disease pathogenesis, we can develop new...
Tipo: Manuscript Palavras-chave: Genetics & Genomics; Immunology; Neuroscience; Bioinformatics.
Ano: 2011 URL: http://precedings.nature.com/documents/5934/version/1
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Inferring decoding strategy from choice probabilities in the presence of noise correlations Nature Precedings
Ralf M. Haefner; Sebastian Gerwinn; Jakob H. Macke; Matthias Bethge.
The activity of cortical neurons in sensory areas covaries with perceptual decisions, a relationship often quantified by choice probabilities. While choice probabilities have been measured extensively, their interpretation has remained fraught with difficulty. Here, we derive the mathematical relationship between choice probabilities, read-out weights and noise correlations within the standard neural decision making model. Our solution allows us to prove and generalize earlier observations based on numerical simulations, and to derive novel predictions. Importantly, we show how the read-out weight profile, or decoding strategy, can be inferred from experimentally measurable quantities. Furthermore, we present a test to decide whether the decoding weights...
Tipo: Manuscript Palavras-chave: Neuroscience.
Ano: 2012 URL: http://precedings.nature.com/documents/7014/version/1
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Dyslexia and the assessment of visual attention Nature Precedings
John Skoyles; Bernt C. Skottun.
Visual stream segregation has been proposed as a method to measure visual attention in dyslexia. Another task proposed to do this is the line-motion illusion. Both tasks, it is observed, can be carried out with spatially distributed stimuli. This, however, appears inconsistent with these tasks being linked speci?cally to attentional processes since this would require them to spatially focus cognitive resources. Also, both line-motion and visual stream segregation involve the perception of movement raising the possibility that what is actually measured by these tasks is not attention but some aspect of motion perception.
Tipo: Manuscript Palavras-chave: Neuroscience.
Ano: 2011 URL: http://precedings.nature.com/documents/5529/version/1
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Workshop report: 1st INCF Workshop on Large-scale Modeling of the Nervous System Nature Precedings
Mikael Djurfeldt; Anders Lansner.
The goal of this workshop was to survey current demands, ongoing activities, and plans relating to development of tools for scalable neural network simulation. Areas covered included software components for preprocessing/model setup, as well
as for storage, analysis, and visualization of results. Participants discussed the need for coordinated action in the field with regard to model, method and tool development. The reports a description of the state-of-art in the field as well as recommendations for actions to facilitate infrastructure developments.
Tipo: Manuscript Palavras-chave: Neuroscience; Bioinformatics; Data Standards.
Ano: 2007 URL: http://precedings.nature.com/documents/262/version/1
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Synaptic state matching: a dynamical architecture for predictive internal representation and feature perception Nature Precedings
Saeed Tavazoie.
Here we consider the possibility that a fundamental function of sensory cortex is the generation of an internal simulation of sensory environment in real-time. A logical elaboration of this idea leads to a dynamical neural architecture that oscillates between two fundamental network states, one driven by external input, and the other by recurrent synaptic drive in the absence of sensory input. Synaptic strength is modified by a proposed synaptic state matching (SSM) process that ensures equivalence of spike statistics between the two network states. Remarkably, SSM, operating locally at individual synapses, generates accurate and stable network-level predictive internal representations, enabling pattern completion and unsupervised feature detection from...
Tipo: Manuscript Palavras-chave: Neuroscience.
Ano: 2012 URL: http://precedings.nature.com/documents/6282/version/2
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Neuronal plasticity: cell-based strategy for target identification and validation Nature Precedings
Ana Mingorance-Le Meur; Timothy P. O'Connor.
While growing neurites are relatively plastic during development, their plasticity levels drop rapidly as neurons mature and become integrated into neuronal networks. As a consequence, the central nervous system ability to reorganize itself in response to injury or disease is insufficient. One of the main limitations for the design of therapeutic strategies to enhance neurite sprouting following neurological diseases is our poor understanding of the mechanisms underlying neurite structural plasticity. 

To overcome this limitation, we have implemented a strategy to identify, characterize and validate the most therapeutically relevant drug targets to modulate neuronal plasticity. This strategy is based on the hypothesis...
Tipo: Poster Palavras-chave: Molecular Cell Biology; Neuroscience; Pharmacology.
Ano: 2009 URL: http://precedings.nature.com/documents/2780/version/1
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Crosstalk and the spectrum of biological global broadcasts: Toward generalization of the Baars consciousness model across physiological subsystems Nature Precedings
Rodrick Wallace.
Once cognitive biological phenomena are recognized as necessarily having 'dual' information sources, it is easy to show that the information theory chain rule implies isolating coresident information sources from crosstalk requires more metabolic free energy than permitting correlation. This provides conditions for an evolutionary exaptation leading to dynamic global broadcasts of interacting cognitive biological processes analogous to, but slower than, consciousness, itself included within the paradigm. The argument is closely analogous to the well-studied exaptation of noise to trigger stochastic resonance amplification in physiological systems.
Tipo: Manuscript Palavras-chave: Biotechnology; Developmental Biology; Immunology; Molecular Cell Biology; Neuroscience; Evolutionary Biology.
Ano: 2012 URL: http://precedings.nature.com/documents/6898/version/1
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Optimal storage and recall with biologically plausible synapses Nature Precedings
Cristina Savin; Mate Lengyel.
Synaptic plasticity is widely accepted to underlie learning and memory. Yet, models of associative networks with biologically plausible synapses fail to match brain performance: memories stored in such networks are quickly overwritten by ongoing plasticity (Amit & Fusi 1996, Fusi et al 2007). Metaplasticity - the process by which neural activity changes the ability of synapses to exhibit further plasticity - is believed to increase memory capacity (Fusi et al 2005). However, it remains unclear if neurons can make use of this additional information during recall. In particular, previous attempts at reading out information in metaplastic synapses using heuristic recall dynamics led to rather poor performance (Huang & Amit...
Tipo: Manuscript Palavras-chave: Neuroscience.
Ano: 2011 URL: http://precedings.nature.com/documents/5818/version/1
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Transcriptomic analysis implicates ribosomal and energy metabolic pathways in antiepileptic drug action in a Drosophila model Nature Precedings
Priyanka Singh; Farhan Mohammad; Abhay Sharma.
Mechanisms of long term action of antiepileptic drugs (AEDs), used in treating epilepsy and many other neurological and psychiatric disorders, are poorly understood. Recently, a novel Drosophila transcriptomic model of locomotor plasticity induced by chronic pentylenetetrazole (PTZ), a chemoconvulsant commonly used to model epileptogenesis and test AEDs in rodents, has been described. In this model, two of the five AEDs tested, sodium valproate (NaVP) and levetiracetam (LEV), not ethosuximide (ETH), gabapentin (GBP) and vigabatrin (VGB), ameliorate development of chronic PTZ induced locomotor alteration. Here, we describe transcriptomic effect of the AEDs in the fly model. Singular treatment with ETH, GBP and VGB in general caused downregulation of genes....
Tipo: Manuscript Palavras-chave: Genetics & Genomics; Neuroscience; Pharmacology; Bioinformatics.
Ano: 2009 URL: http://precedings.nature.com/documents/3396/version/1
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Dorsal Nucleus Raphé Nature Precedings
Allen Institute for Brain Science; Josh J. Royall; Lydia L. Ng; John A. Morris.
This report contains a gene expression summary of the dorsal nucleus raphé (DR), derived from the Allen Brain Atlas (ABA) in-situ hybridization (ISH) mouse data set. 
The structure’s location and morphological characteristics in the mouse brain are described using the Nissl data found in the Allen Reference Atlas. Using an established algorithm, the expression values of the DR were compared to the values of the macro/parent-structure, in this case the midbrain, for the purpose of extracting regionally specific gene expression data. The highest ranking ratios were then manually curated and verified. The 50 Select Genes were compiled for expression characterization. The experimental data for each gene may be accessed...
Tipo: Manuscript Palavras-chave: Genetics & Genomics; Neuroscience.
Ano: 2008 URL: http://precedings.nature.com/documents/2054/version/1
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ClassTAL Nature Precedings
Federico D'Agata.
This is the description of a Matlab script (classTAL.m) that automatically classifies BrainVoyager .voi maps with afni, MRIStudio white matter and fcon1000 Intrinsic Connectivity Networks brain atlas. The script saves many useful output files (tables, figures and .voi).
Tipo: Manuscript Palavras-chave: Neuroscience.
Ano: 2011 URL: http://precedings.nature.com/documents/6142/version/2
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