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AFLP polymorphism in restored provenances of Ceiba aesculifolia within an urban heat island Phyton
Olvera-Mendoza,EI; Lara-Cabrera,SI; Sáenz-Romero,C; Lindig-Cisneros,R.
To quantify the effect on genetic diversity of restoring tree populations in an area under the influence of an urban heat island, we evaluated the genetic diversity of 72 Ceiba aesculifolia individuals, from a restoration experiment established from 2170 to 2260 m a.s.l. Reintroduced individuals were compared with the provenance from which the seeds were obtained, and two external provenances, for a total of 123 individuals. Samples were analyzed with three AFLP primer combinations. Polymorphisms of 38.4 to 62.5% were obtained. Genetic diversity estimated with the Simpson index ranged from 0.14 to 0.2. The provenances in the restoration site had higher diversity than the provenance that originated the seeds. Groups formed with provenances with similar...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Genetic diversity; AFLP; Restoration ecology; Ceiba aesculifolia; Protected Natural Area.
Ano: 2016 URL: http://www.scielo.org.ar/scielo.php?script=sci_arttext&pid=S1851-56572016000200001
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Variability and Genetic Structure in Populations of Arrabidaea bilabiata (Sprague) Sandwith in the Amazonas State Planta Daninha
Souza,L.S.A.; Silva,J.F.; Lopes,M.T.G.; Bentes,J.L.S.; Valente,M.S.F.; Costa Neto,P.Q..
Weeds in pastures can intoxicate animals, and Arrabidaea bilabiata is the most important species for herbivores in floodplain areas in the Amazon Basin. Genetic diversity studies in natural populations may contribute to the better understanding of the range of toxicity and the genetic variability organization in this species. The objective of this study was to assess the variability and genetic structure in six populations of A. bilabiata sampled in floodplain areas in three municipalities of the Amazonas State, from the AFLP markers analysis. AFLP markers were efficient to characterize the genetic variability of the 65 individuals analyzed. From four combinations of oligonucleotides, a total of 309 AFLP fragments was obtained, where 304 (98.38%) were...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Arrabidaea bilabiata; Pasture weeds; Poisonous plants; AFLP; Genetic diversity.
Ano: 2015 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-83582015000200213
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Exploring Parthenium weed biotypes by chloroplast DNA barcode analysis Planta Daninha
Anjum,Tehmina; Jabeen,Rasheda; Adkins,Steve; Akram,Waheed.
Abstract Background: Parthenium weed (Parthenium hysterophorus L.) is an invasive weed that has invaded vast regions of Pakistan in a relatively very short period of a decade or two, threatening the crop fields of the agrarian fed country. Parthenium hysterophorus L. is native of central South America and Gulf of Mexico, has now turned out to be a weed of global significance due to its alarming invasions and profuse spread in approximately all parts of the world. Its invasion is probably due to the contamination of its seeds in the imported grains from other countries of the world. Objective: During comprehensive sampling from Pakistan and Australia, it was observed that parthenium weed accessions exhibited several distinct morphological features...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Parthenium hysterophorus; Variations; Genetic diversity; MEGA; Haplotypes.
Ano: 2020 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-83582020000100302
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Genetic diversity among proso millet (Panicum miliaceum) biotypes assessed by AFLP technique Planta Daninha
Karam,D.; Westra,P.; Nissen,S.J.; Ward,S.M.; Figueiredo,J.E.F..
The Amplified Fragment Length Polymorphism (AFLP) technique was used to access genetic diversity between three domestic and nine wild proso millet biotypes from the United States and Canada. Eight primer combinations detected 39 polymorphic DNA fragments, with the genetic distance estimates among biotypes ranging from 0.02 to 0.04. Colorado-Weld County black seeded and Wyoming-Platte County were the most distinct biotypes according to the dissimilarity level. A UPGMA cluster analysis revealed two distinct groups of proso millet without any geographic association. Six weed biotypes exhibiting some characters of cultivated plants were grouped together with domesticated biotypes of proso millet while the three typical wild phenotypes were clearly clustered...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Proso millet; AFLP; Taxonomic relationship; Genetic diversity.
Ano: 2004 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-83582004000200001
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Crop Genetic Resources: An Economic Appraisal AgEcon
Day-Rubenstein, Kelly A.; Heisey, Paul W.; Shoemaker, Robbin A.; Sullivan, John; Frisvold, George B..
Crop genetic resources are the basis of agricultural production, and significant economic benefits have resulted from their conservation and use. However, crop genetic resources are largely public goods, so private incentives for genetic resource conservation may fall short of achieving public objectives. Within the U.S. germplasm system, certain crop collections lack sufficient diversity to reduce vulnerability to pests and diseases. Many such genetic resources lie outside the United States. This report examines the role of genetic resources, genetic diversity, and efforts to value genetic resources. The report also evaluates economic and institutional factors influencing the flow of genetic resources, including international agreements, and their...
Tipo: Report Palavras-chave: Genetic resources; Genetic diversity; Germplasm; R&D; International transfer of genetic resources; In situ conservation; Ex situ conservation; Gene banks; Intellectual property.; Crop Production/Industries; Research and Development/Tech Change/Emerging Technologies.
Ano: 2005 URL: http://purl.umn.edu/59388
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Wheat Diversity and Productivity in Indian Punjab After the Green Revolution AgEcon
Smale, Melinda; Singh, Joginder; Di Falco, Salvatore; Zambrano, Patricia.
The Punjab of India is an historical source of key wheat genetic resources in national and global plant breeding, and a focus of concerns about the abandonment of local varieties during the Green Revolution. Much of the wheat area in Punjab was already planted with earlier products of modern plant breeding programs when the Green Revolution began. These cultivars were more genetically similar and less productive than the semi-dwarf wheat varieties that succeeded them. We define, summarize and test indices of variety change and genetic diversity for the modern wheat varieties released and grown in Indian Punjab during the post-Green Revolution period. The first is the area-weighted average of varieties grown, which measures the rate of variety change,...
Tipo: Conference Paper or Presentation Palavras-chave: Wheat; Genetic diversity; Indian Punjab; Productivity; Crop Production/Industries; Q12; Q57.
Ano: 2006 URL: http://purl.umn.edu/25794
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Should Europe Further Strengthen Intellectual Property for Plant Breeders? An Analysis of Seed Industry Proposals AgEcon
Eaton, Derek J.F.; van Tongeren, Frank W..
This paper illustrates the potential negative effects of increasing the scope of plant breeders' rights (PBR) protection, as has been proposed for Europe by leading plant breeding firms. Such a policy could increase the costs for varietal development for breeding companies, particularly if their access to varieties of the market leader is constrained. This is represented as an asymmetrical increase in breeders' cost functions in a simple model of endogenous quality choice under price competition. Increased scope of IPR protection leads to increased profits for the leading breeding company but decreases in varietal quality and both farm and overall profits.
Tipo: Conference Paper or Presentation Palavras-chave: Intellectual property rights; Product differentiation; Plant breeding; Genetic diversity; Research and Development/Tech Change/Emerging Technologies; L13; O34; Q16.
Ano: 2005 URL: http://purl.umn.edu/24725
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Farmer management of production risk on degraded lands: the role of wheat genetic diversity in Tigray Region, Ethiopia AgEcon
Di Falco, Salvatore; Chavas, Jean-Paul; Smale, Melinda.
This paper investigates the effects of wheat genetic diversity and land degradation on risk and agricultural productivity in less favored production environments of a developing agricultural economy. Drawing production data from household survey conducted in the highlands of Ethiopia, we estimate a stochastic production function to evaluate the effects of variety richness, land degradation, and their interaction on the mean and the variance of wheat yield. Ethiopia is a centre of diversity for durum wheat and farmers manage complex variety mixtures on multiple plots. Econometric evidence shows that variety richness increases farm productivity. Variety richness also reduces yield variability but only for high levels of genetic diversity. Simulations with...
Tipo: Report Palavras-chave: Land degradation; Wheat production; Productivity; Risk; Genetic diversity; Household surveys; Biodiversity; Stochastic analysis; Crop Production/Industries; Risk and Uncertainty.
Ano: 2006 URL: http://purl.umn.edu/55417
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Assessment of silver-stained AFLP markers for studying DNA polymorphism in proso millet (Panicum miliaceum L.) Rev. Bras. Bot.
Karam,Décio; Westra,Philip; Niessen,Scott J.; Ward,Sarah M.; Figueiredo,José Edson Fontes.
Proso millet (Panicum miliaceum L.) is a serious weed in North America. A high number of wild proso millet biotypes are known but the genetic basis of its phenotypic variation is poorly understood. In the present study, a non-radioactive silver staining method for PCR-Amplified Fragment Length Polymorphism (AFLP) was evaluated for studying genetic polymorphism in American proso millet biotypes. Twelve biotypes and eight primer combinations with two/three and three/three selective nucleotides were used. Pair of primers with two/three selective nucleotides produced the highest number of amplified DNA fragments, while pair of primers with three/three selective nucleotides were more effective for revealing more polymorphic DNA fragments. The two better primer...
Tipo: Info:eu-repo/semantics/article Palavras-chave: AFLP; Genetic diversity; Molecular markers; Proso-millet.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-84042006000400011
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Allozyme variation in a natural population of Stryphnodendron adstringens in the Rio Preto State Park, southeastern Brazil Rev. Bras. Bot.
Glasenapp,Jacqueline Siqueira; Barbosa,Priscila Barros; Casali,Vicente Wagner Dias; Martins,Ernane Ronie; Cruz,Cosme Damião.
Leaves and fruits from 63 Stryphnodendron adstringens trees were sampled in the Rio Preto State Park to analyze allozyme segregation, tissue specific expression of allozyme loci, and their genetic parameters. The enzyme systems ADH, EST, ACP, PGM, PGI, GDH, G6PDH, GOT, IDH, LAP, MDH, PER and SKDH were assessed by means of starch-gel electrophoresis. The polymorphic systems PGI, IDH, MDH and GOT demonstrated a dimeric quaternary structure, while EST and PER were monomeric. The total expected genetic diversity (H E) for leaves and seeds were 0.325 and 0.244 respectively. The effective number of alleles per locus (A E) was 1.58 in leaves and 1.42 in seeds. The values of H E and A E observed in S. adstringens were comparatively higher than the average values...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Allozyme segregation; Genetic diversity; Heterozygosity; Medicinal plants.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-84042012000200003
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Development and Application of Est-Ssr Markers in Quails Rev. Bras. Ciênc. Avic.
Bai,JY; Pang,YZ; Qi,YX; Zhang,XH; Yun,XY.
ABSTRACT Aiming at accelerating the application of molecular markers in the genetic improvement of quails, six EST-SSR markers were successfully developed using a bioinformatics method. Polymorphisms of three quail populations (Chinese yellow quail, China black quail and Korean quail) were detected. The results showed that there were 2-6 alleles in six EST-SSR markers. Mean polymorphism information contents of Chinese yellow quails, Chinese black quails and Korean quails were determined as 0.5451, 0.4962 and 0.4937, respectively. Average heterozygosity valuesof 0.6134, 0.5759 and 0.5613 were calculated. Among the six EST-SSR markers, three were highly polymorphic, and the other three were moderately polymorphic. The newly-developed six EST-SSR markers may...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chinese yellow quail EST-SSR Bioinformatics; Genetic diversity.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-635X2016000500027
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Microsatellite Analysis of Genetic Diversity in Quail Populations from China Rev. Bras. Ciênc. Avic.
Bai,JY; Pang,YZ; Zhang,XH; Yun,YX; Qi,YX.
ABSTRACT Polymorphism of three quail communities was analyzed by using 12 microsatellite markers in this paper, aiming to provide scientific references for the evaluation, protection and utilization of quail genetic resources in China. Results demonstrated that the number of observed alleles by 12 microsatellite markers ranges between 4~7. The average polymorphism information contents (PIC) of the Chinese yellow quail, the Chinese black quail and the Korean quail, as detected by 12 microsatellite markers, are 0.6853, 0.6401 and 0.6565,respectively, and average heterozygosity values are 0.7333, 0.6957 and 0.7111, respectively. This indicates that the Chinese yellow quail has the richest genetic polymorphism. According to cluster analysis, the Chinese black...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chinese black quail; Microsatellite marker; Polymorphism; Genetic diversity.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-635X2016000300519
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Characterization of Hilly Chickens in Consideration of Climate Change Factors: Light and Heat Rev. Bras. Ciênc. Avic.
Khan,MKI; Ali,M; Akter,MA; Zaman,S; Miah,G.
ABSTRACT Hilly chickens were characterized from January 2015 to September 2016 considering climate factors (light and heat). The experimental birds were divided into three groups (heat stress; light and control). The heat was generated in the chicken’s shelter by a black shaded light (Lantern) for two to three hours more after sunset. A lighting device (Lantern) was kept in the chicken’s shelter for the same period for increasing daylight duration. The individual chicken’s egg production, egg weight and mature live weight were studied from onset of egg production. It was observed that reddish brown hilly type chicken produced more (100.80 no/year/chicken) and larger sized (43.21g) eggs than spotted chicken (83.4 no/year/chicken and 40.46g). Among the three...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chicken; Climatic factors; Microsatellite; Genetic diversity.
Ano: 2018 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-635X2018000400731
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Symbiotic Efficiency and Genotypic Characterization of Variants of Bradyrhizobium spp. in Commercial Inoculants for Soybeans Rev. Bras. Ciênc. Solo
Barbosa,Leonardo de Paiva; Costa,Patrícia Freitas; Ribeiro,Paula Rose Almeida; Rufini,Márcia; Guimarães,Amanda Azarias; Moreira,Fatima Maria de Souza.
ABSTRACT High yields obtained from soybean [Glycine max (L.) Merrill], and consequent profits, are related to efficient symbiosis of soybean with nitrogen fixing bacteria of the Bradyrhizobium genus. Inoculation with strains belonging to the Bradyrhizobium japonicum, B. elkanii, and B. diazofficiens species, approved by the Brazilian Ministry of Agriculture (MAPA), is a common practice for this crop. However, variations in the composition of inoculants can change the quality of the product. The aim of this study was to genetically identify and to evaluate the symbiotic efficiency of isolates with cultural characteristics different from those of strains approved by MAPA and which are present in two commercial inoculants for soybean. Isolates obtained from...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Glycine max; 16S rRNA gene; Cultural characterization; Rhizobia; Genetic diversity.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-06832017000100432
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Analysis of the genetic diversity in Metopolophium dirhodum (Walker) (Hemiptera, Aphididae) by RAPD markers Rev. Bras. entomol.
Lopes-da-Silva,Marcelo; Vieira,Luiz Gonzaga Esteves.
The emergence of host-races within aphids may constitute an obstacle to pest management by means of plant resistance. There are examples of host-races within cereals aphids, but their occurrence in Rose Grain Aphid, Metopolophium dirhodum (Walker, 1849), has not been reported yet. In this work, RAPD markers were used to assess effects of the hosts and geographic distance on the genetic diversity of M. dirhodum lineages. Twenty-three clones were collected on oats and wheat in twelve localitites of southern Brazil. From twenty-seven primers tested, only four primers showed polymorphisms. Fourteen different genotypes were revealed by cluster analysis. Five genotypes were collected only on wheat; seven only on oats and two were collected in both hosts. Genetic...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Rose-Grain Aphid; Genetic diversity; Host-races; Insect-plant relationships.
Ano: 2007 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262007000100009
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Evaluation of Xylella fastidiosa genetic diversity by fAFPL markers Rev. Bras. Frutic.
Kishi,Luciano Takeshi; Wickert,Ester; Lemos,Eliana Gertrudes de Macedo.
The first phytopathogenic bacterium with its DNA entirely sequenced is being detected and isolated from different host plants in several geographic regions. Although it causes diseases in cultures of economic importance, such as citrus, coffee, and grapevine little is known about the genetic relationships among different strains. Actually, all strains are grouped as a single species, Xylella fastidiosa, despite colonizing different hosts, developing symptoms, and different physiological and microbiological observed conditions. The existence of genetic diversity among X. fastidiosa strains was detected by different methodological techniques, since cultural to molecular methods. However, little is know about the phylogenetic relationships developed by...
Tipo: Info:eu-repo/semantics/article Palavras-chave: FAFLP; Xylella fastidiosa; Genetic diversity; DNA fingerprinting.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452008000100037
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Cucumber mosaic virus resistance and reproductive biology of brazilian melon accessions Rev. Bras. Frutic.
Sanabria-Verón,Nadia Carolina; Melo,Cláusio Antônio Ferreira de; Pereira,Jadergudson; Nunes,Glauber Henrique de Sousa; Oliveira,Ohana Luiza Santos de; Corrêa,Ronan Xavier.
Abstract In melon (Cucumis melo) the resistance to Cucumber Mosaic Virus (CMV) and the knowledge about reproductive characteristics are important for selection of genitors for breeding population. So, the objective was to investigate if different accessions of melon from a Brazilian germplasm bank have variability in resistance to CMV (FNY strain) and polymorphism in resistance loci markers, as well as whether there is genetic diversity on resistance and floral morphology descriptors and reproductive biology, aiming at genetic improvement. The symptoms induced by CMV were evaluated in 52 melon genotypes which were genotyped with three markers of single nucleotide polymorphisms related to CMV resistance. A sample of 24 genotypes was characterized for...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Molecular marker; SNP-CAP; Genetic diversity; Floral and reproductive variability; Ward-MLM; CMV.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452019000500405
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CHEMICAL AND PHENOTYPIC DIVERSITY OF MEXICAN PLUMS (Spondias purpurea L.) FROM THE STATES OF GUERRERO AND MORELOS, MEXICO Rev. Bras. Frutic.
ASTUDILLO,YANIK IXCHEL MALDONADO; TEJACAL,IRÁN ALIA; NÚÑEZ-COLÍN,ALBERTO CARLOS; HERNÁNDEZ,JAVIER JIMÉNEZ; MARTÍNEZ,VÍCTOR LÓPEZ.
ABSTRACT Fruits from 86 ecotypes of Mexican plum were harvested from the states of Guerrero and Morelos during the dry season. Of these, 22 were wild ecotypes and 64 were cultivated varieties. Among the variables measured, those with the highest variation coefficients were color, flavor, and mass (> 45%), highlighting the presence of considerable intra-species variability. Cluster analysis separated the 86 accessions into 5 groups, mainly on the basis of color, flavor, length, and mass. Members from the first three groups had red (Group I), yellow (Group II), or purple (Group III) epicarps and higher values of mass (12.2-16 g), length (29.6-33.9 mm), pulp yield (68.8-71.9% ), TSS (11.16-11.52 °Brix) and flavor index (14.5-18.3), making them suitable...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Quality; Canonical discriminant analysis; Cluster analysis; Genetic diversity; Underutilized crops.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000200302
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Molecular characterization of papaya genotypes using AFLP markers Rev. Bras. Frutic.
Oliveira,Eder Jorge de; Costa,Juliana Leles; Santos,Lucas Ferraz dos; Carvalho,Fabiana Moraes de; Silva,Aline dos Santos; Dantas,Jorge Luiz Loyola.
Due to the low genetic variability reported in the commercial plantations of papaya (Carica papaya L.), the objective of this study was analyze the genetic diversity of 32 genotypes including cultivars, landraces, inbred lines, and improved germplasm using the AFLP technique (Amplified Fragment Length Polymorphism). The genetic distance matrix was obtained using the Nei and Li genetic distance and clustering was performed using the unweighted pair-method with arithmetic mean (UPGMA). Using 11 combinations of EcoRI/MseI primers, 383 polymorphic bands were obtained. On average, 34.8 polymorphic bands were obtained per primer combination. Five clusters were formed. The traditional cultivar 'Sunrise' and the inbred line CMF-L30-08 were the closest genotypes,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Papaya breeding; Genetic resources; Genetic diversity; Carica papaya L.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452011000300020
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Genetic variations among passion fruit species using rapd markers Rev. Bras. Frutic.
Aukar,Ana Paula de Andrade; Lemos,Eliana Gertrudes de Macedo; Oliveira,João Carlos.
It has been evaluated the genetic variability through the use of RAPD molecular markers on the following passionflower species: Passiflora amethystina, P. caerulea, P. cincinnata, P. coccinea, P. serrato digitata, P. foetida, P. maliformis, P. alata, P. giberti, P. laurifolia, P. macrocarpa, P. nitida, P. setacea, P. suberosa, P. ligularis, P. capsularis, P. edulis Sims and its botanical variety P. edulis Sims f. flavicarpa Deg. In this research work, the analyses of the random amplified polymorphic DNA products (RAPD) were employed to estimate the genetic diversity and the taxonomic linkage within the species above. The total of 21 primers were used in this study which generated 270 different polymorphic products. It was possible to detect that the...
Tipo: Info:eu-repo/semantics/article Palavras-chave: DNA; Genetic diversity; Passion fruit; Random Amplified Polymorphic DNA.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452002000300044
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