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Registros recuperados: 63
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POPSTAR : une nouvelle génération de système de marquage pour le suivi des espèces marines ArchiMer
Bernard, S; Kerzérho, V; Rouyer, Tristan; Bonhommeau, Sylvain.
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00487/59830/62973.pdf
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Tagging Atlantic bluefin tuna from a farming cage: An attempt to reduce handling times for large scale deployments ArchiMer
Rouyer, Tristan; Bonhommeau, Sylvain; Giordano, Nicolas; Ellul, Saviour; Ellul, Giovanni; Deguara, Simeon; Wendling, Bertrand; Belhaj, Mohamed Moez; Kerzerho, Vincent; Bernard, Serge.
Our knowledge on the biology and ecology of marine species have improved greatly through the use of archival tags by enabling the collection on information from individual in the wild. This is specifically true for large pelagic species such as the Atlantic Bluefin tuna (ABFT, Thunnus thynnus) where, for the first time, it has been possible to confirm through fisheries-independent data, migration patterns, reproductive and feeding behaviours and habitat use. However, large-scale tagging experiments that would enable researchers to tackle group behaviour are difficult to set up. On the one hand, the impact of the actual tagging operation should be as minimal as possible to avoid any change in behaviour of the fish which could influence tag data analyses. On...
Tipo: Text Palavras-chave: Large Atlantic bluefin tuna; Electronic tagging; Release; Farming.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00466/57818/60365.pdf
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A catch curve analysis for east Atlantic and Mediterranean bluefin tuna ArchiMer
Kell, Laurence; Bonhommeau, Sylvain; Fromentin, Jean-marc.
A catch-curve analysis using catch-at-age (CAA) data is performed to evaluate recent changes in selection pattern of the eastern Atlantic and Mediterranean bluefin tuna fishery. This was done in order to detect changes following the implementation of the Recovery Plan.
Tipo: Text Palavras-chave: Bluefin tuna; Catch curves; Management; Selectivity; Stock assessment.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00191/30272/28732.pdf
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Update of the abundance index for juvenile fish derived from aerial surveys of bluefin tuna in the western Mediterranean Sea ArchiMer
Rouyer, Tristan; Brisset, Blandine; Bonhommeau, Sylvain; Fromentin, Jean-marc.
Se describe un enfoque que hace posible ejecutar online el conjunto de códigos utilizados para la evaluación del stock de atún rojo del este (BFTE) de ICCAT. En 2014, el Grupo de especies de atún rojo de ICCAT ha podido ejecutar miles de ensayos de modelos utilizando la paralelización de códigos R y Fortran en un superordenador. Este nuevo enfoque tiene muchos beneficios científicos, pero muy pocos participantes podrían reproducirlo sin unas capacidades específicas. Desde noviembre de 2015, el H2020 BlueBridge project está financiando un ingeniero para crear un sitio web (o VRE de Entorno de investigación virtual) en el que los usuarios puedan parametrizar y ejecutar varios pasos del trabajo de la evaluación de atún rojo del este. Reempaquetando los...
Tipo: Text Palavras-chave: Bluefin tuna; Scientific cloud; Stock assessment; Grid computing; Online processing.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00435/54638/56043.pdf
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Resolving Hjort's Dilemma How Is Recruitment Related to Spawning Stock Biomass in Marins Fish? ArchiMer
Cury, Philippe M.; Fromentin, Jean-marc; Figuet, Sarah; Bonhommeau, Sylvain.
The relationship between spawning fish abundance and the number of offspring, the so-called stock-recruitment relationship, is crucial for fisheries management and conservation measures. Using the most comprehensive data set ever assembled, we quantify this relationship for 211 fish stocks worldwide, revealing a global pattern with a pervasive asymptotic shape that shows increasing recruitment reaching an upper limit for values around half to two-thirds of parental biomass. This corroborates previous theoretical and modeling results. However, parental biomass is a predictor for only 5% to 15% of the variance in recruitment, demonstrating the weak predictive power of the stock-recruitment relationship in marine fish populations. Thus, there is a need to...
Tipo: Text
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00253/36441/35000.pdf
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Aerial surveys of bluefin tuna in the Western Mediterranean sea: retrospective, prospective, perspective ArchiMer
Bonhommeau, Sylvain; Farrugio, Henri; Poisson, Francois; Fromentin, Jean-marc.
While the current stock status of bluefin tuna (BFT) has been considered as declining, there remain considerable data limitations for its stock assessment in the Mediterranean Sea. The collection of fishery-independent data reveals to be crucial to compensate for the lack of Mediterranean purse seine CPUE indices as well as to overcome a potential halt in the bluefin tuna fishery that would impede the monitoring of the stock and the comparison to reference points. Here we present a retrospective of aerial surveys that have been carried out since 2000. It includes the protocol as well as a retrospective of temporal and spatial distribution of detected schools. We then propose several perspectives that could improve the data collection method itself and the...
Tipo: Text Palavras-chave: Atlantic bluefin tuna; Aerial survey; Index of abundance; Gulf of Lions; Strip transect.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00192/30292/28775.pdf
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Sea Turtles Geolocalization in the Indian Ocean: An Over Sea Radio Channel framework integrating a trilateration technique ArchiMer
Guegan, Loic; Murad, Nour Mohammad; Bonhommeau, Sylvain.
This paper deals with the modeling of the over sea radio channel and aims to establish sea turtles localization off the coast of Reunion Island, and also on Europa Island in the Mozambique Channel. In order to model this radio channel, a framework measurement protocol is proposed. The over sea measured channel is integrated to the localization algorithm to estimate the turtle trajectory based on Power of Arrival (PoA) technique compared to GPS localization. Moreover, cross correlation tool is used to characterize the over sea propagation channel. First measurement of the radio channel on the Reunion Island coast combine to the POA algorithm show an error of 18 m for 45% of the approximated points
Tipo: Text
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00434/54569/55947.pdf
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Satellite remote sensing for an ecosystem approach to fisheries management ArchiMer
Chassot, Emmanuel; Bonhommeau, Sylvain; Reygondeau, Gabriel; Nieto, Karen; Polovina, Jeffrey J.; Huret, Martin; Dulvy, Nicholas K.; Demarcq, Herve.
Satellite remote sensing (SRS) of the marine environment has become instrumental in ecology for environmental monitoring and impact assessment, and it is a promising tool for conservation issues. In the context of an ecosystem approach to fisheries management (EAFM), global, daily, systematic, high-resolution images obtained from satellites provide a good data source for incorporating habitat considerations into marine fish population dynamics. An overview of the most common SRS datasets available to fishery scientists and state-of-the-art data-processing methods is presented, focusing on recently developed techniques for detecting mesoscale features such as eddies, fronts, filaments, and river plumes of major importance in productivity enhancement and...
Tipo: Text Palavras-chave: Ecosystem approach; Fisheries; Mesoscale; Satellite; Tracking.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00031/14188/11468.pdf
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Sardine ( Sardina pilchardus ) larval dispersal in the Iberian Upwelling System, using coupled biophysical techniques ArchiMer
Santos, Amp; Nieblas, Anne-elise; Verley, P.; Teles-machado, A.; Bonhommeau, Sylvain; Lett, C.; Garrido, S.; Peliz, A..
The European sardine (Sardina pilchardus) is the most important small pelagic fishery of the Western Iberia Upwelling Ecosystem (WIUE). Recently, recruitment of this species has declined due to changing environmental conditions. Furthermore, controversies exist regarding its population structure with barriers thought to exist between the Atlantic-Iberian Peninsula, Northern Africa, and the Mediterranean. Few studies have investigated the transport and dispersal of sardine eggs and larvae off Iberia and the subsequent impact on larval recruitment variability. Here, we examine these issues using a Regional Ocean Modeling System climatology (1989-2008) coupled to the Lagrangian transport model, Ichthyop. Using biological parameters from the literature, we...
Tipo: Text Palavras-chave: Iberian Peninsula; Sardina pilchardus; Larval dispersal; Lagrangian transport; Ichthyop; Regional Ocean Modeling System.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00427/53814/54784.pdf
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Effects of Stochasticity in Early Life History on Steepness and Population Growth Rate Estimates: An Illustration on Atlantic Bluefin Tuna ArchiMer
Simon, Maximilien; Fromentin, Jean-marc; Bonhommeau, Sylvain; Gaertner, Daniel; Brodziak, Jon; Etienne, Marie-pierre.
The intrinsic population growth rate (r) of the surplus production function used in the biomass dynamic model and the steepness (h) of the stock-recruitment relationship used in age-structured population dynamics models are two key parameters in fish stock assessment. There is generally insufficient information in the data to estimate these parameters that thus have to be constrained. We developed methods to directly estimate the probability distributions of r and h for the Atlantic bluefin tuna (Thunnus thynnus, Scombridae), using all available biological and ecological information. We examined the existing literature to define appropriate probability distributions of key life history parameters associated with intrinsic growth rate and steepness, paying...
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Ano: 2012 URL: http://archimer.ifremer.fr/doc/00115/22640/20362.pdf
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On-chip Generation of Sine-wave Summing Digital Signals: an Analytic Study Considering Implementation Constraints ArchiMer
David-grignot, Stephane; Lamlih, Achraf; Belhaj, Mohamed Moez; Kerzerho, Vincent; Azais, Florence; Soulier, Fabien; Freitas, Philippe; Rouyer, Tristan; Bonhommeau, Sylvain; Bernard, Serge.
In the context of biosensor as much as Built-In-Self Test (BIST), on-chip sine-wave signal generation is a recurring research topic. Considering the implementation constraints, it implies a trade-off between the amount of resources and the signal quality. An attractive solution consists in combining several digital signals to build this analog sine-wave. The objective of this paper is to give an analytic study of various potential digital-based solutions. Thanks to this study, we prove that the technique consisting in setting the phase shifts and various amplitude values of the square-wave signals is the most efficient approach. This study allows the selection of the optimal square-wave signal parameters to cancel low-order harmonics of the generated...
Tipo: Text Palavras-chave: Harmonic cancelation; Sine-wave generation; On-chip signal generation.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00425/53678/54609.pdf
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Overfishing causes frequent fish population collapses but rare extinctions ArchiMer
Le Pape, Olivier; Bonhommeau, Sylvain; Nieblas, Anne-elise; Fromentin, Jean-marc.
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Ano: 2017 URL: http://archimer.ifremer.fr/doc/00392/50387/51097.pdf
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Potential impacts of TAC implementation on the perception of the east Atlantic and Mediterranean bluefin tuna stock status ArchiMer
Bonhommeau, Sylvain; Fromentin, Jean-marc.
This study aims at examining the potential bias in the VPA estimates by simulating a population, catch and CPUEs over 39 years from 1970 to 2008. In the operational model, two levels of noise were added to catch and CPUEs (50 and 100%), three fishing patterns were explored (F=FMSY, F increases linearly from 0.5 FMSY to 2.5 FMSY, F increases linearly from 0.5 FMSY to 2.5 FMSY over the first 34 years and decreases down to FMSY over the last 5 years). We also tested different hypothesis about the impact of the terminal F-ratios, and the natural mortality used in the current VPA as well as the impact of randomly generated CPUE for long-line and trap CPUE. Results show that the VPA is robust to estimate the SSB whatever the noise level in the catch and the...
Tipo: Text Palavras-chave: Bluefin tuna; Stock assessment; VPA; Management regulations; TAC.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00192/30280/28755.pdf
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Populations ichtyologiques des grands pélagiques. Sous-région marine Méditerranée occidentale. Evaluation initiale DCSMM. ArchiMer
Fromentin, Jean-marc; Bonhommeau, Sylvain.
Tipo: Text Palavras-chave: Méditerranée; Grands poissons pélagiques; Biocénose; Exploitation; Etat des stocks.
Ano: 2012 URL: https://archimer.ifremer.fr/doc/00331/44213/43782.pdf
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Influence of environmental variability and age on the body condition of small pelagic fish in the Gulf of Lions ArchiMer
Brosset, Pablo; Menard, Frederic; Fromentin, Jean-marc; Bonhommeau, Sylvain; Ulses, Caroline; Bourdeix, Jean-herve; Bigot, Jean-louis; Van Beveren, Elisabeth; Roos, David; Saraux, Claire.
Endogenous and environmental variables are fundamental in explaining variations in fish condition. Based on more than 20 yr of fish weight and length data, relative condition indices were computed for anchovy and sardine caught in the Gulf of Lions. Classification and regression trees (CART) were used to identify endogenous factors affecting fish condition, and to group years of similar condition. Both species showed a similar annual cycle with condition being minimal in February and maximal in July. CART identified 3 groups of years where the fish populations generally showed poor, average and good condition and within which condition differed between age classes but not according to sex. In particular, during the period of poor condition (mostly recent...
Tipo: Text Palavras-chave: Anchovy; Sardine; Relative condition factor; NW Mediterranean Sea; Endogenous effect; Environmental effect.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00272/38334/36575.pdf
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The fisheries history of small pelagics in the Northern Mediterranean ArchiMer
Van Beveren, Elisabeth; Fromentin, Jean-marc; Rouyer, Tristan; Bonhommeau, Sylvain; Brosset, Pablo; Saraux, Claire.
Since 2007, the biomass of sardine and anchovy in the NW Mediterranean has remained persistently low, whereas the biomass of the commercially low-valued sprat has exploded. Also, simultaneous decreases in condition, size, and/or age of these populations were observed. Altogether, this resulted in a drop in landings of small pelagics. To understand the amplitude of these events and to provide a baseline scenario against which current changes can be compared, we compiled exceptionally long landing series (1865–2013) of sardine, anchovy, and mackerel for different subregions of the southern French coast. We characterized the fluctuations of these landings and compared these with environmental drivers (sea surface temperature, Rhône river discharge, North...
Tipo: Text Palavras-chave: Anchovy; Fish landings; Gulf of Lions; Historical time series; Mackerel; Sardine.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00319/43001/42561.pdf
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Analytical study of on-chip generations of analog sine-wave based on combined digital signals ArchiMer
David-grignot, Stephane; Lamlih, Achraf; Kerzerho, Vincent; Azaıs, Florence; Soulier, Fabien; Bernard, Serge; Rouyer, Tristan; Bonhommeau, Sylvain.
On-chip sine-wave signal generation is widely covered by literature for Built-In-Self Test (BIST) or biosensor applications. The objective is to generate pure and robust sinewave signal with minimal hardware resources. An attractive solution consists in combining several digital signals to built this analog sine-wave. The objective of this paper is to give an analytical study of various potential solutions based on digitalbased approaches. Thanks to this study, we prove that technique consisting in setting the phase shifts and various amplitude values of the square-wave signals is the most efficient approach. Moreover, this study allows the selection of the best solution in terms of parameters of the square-wave signals to cancel loworder harmonics of the...
Tipo: Text Palavras-chave: Harmonic cancellation; Sine-wave generation; On-chip signal generation.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00395/50608/55366.pdf
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Habitat use, vertical and horizontal behaviour of Atlantic bluefin tuna ( Thunnus thynnus ) in the Northwestern Mediterranean Sea in relation to oceanographic conditions ArchiMer
Bauer, Robert Klaus; Fromentin, Jean-marc; Demarcq, Herve; Bonhommeau, Sylvain.
We investigated the habitat utilization, vertical and horizontal behaviour of Atlantic bluefin tuna Thunnus thynnus (ABFT) in relation to oceanographic conditions in the northwestern Mediterranean Sea, based on 36 pop-up archival tags and different environmental data sets. Tags were deployed on early mature ABFT (127–255 cm) between July and November in 2007-2014, on the shelf area off Marseille, France. The data obtained from these tags provided 1643 daily summaries of ABFT vertical behaviour over 8 years of tag deployment. Based on a hierarchical clustering of this data, we could identify four principle daily vertical behaviour types, representing surface (≦10m) and subsurface (10–100 m) orientation, moderate (50–200 m) and deep (≧200m) diving behaviour....
Tipo: Text Palavras-chave: Thunnus thynnus; Habitat use; Spike dives; Fronts; Thermal stratification; Archival tags.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00382/49329/49709.pdf
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Investigating the performances of a bayesian biomass dynamic model with informative priors on Atlantic bluefin tuna ArchiMer
Simon, M; Fromentin, Jean-marc; Bonhommeau, Sylvain; Gaertner, Daniel; Etienne, Marie-pierre.
We examined the possibility of eliciting informative priors for the parameters of a biomass production model with emphasis on the intrinsic population growth rate of Atlantic bluefin tuna (Thunnus thynnus). We reviewed the literature to propose probability distribution functions for the vital rates and used a matrix population model structured by age (Leslie) to compute the population growth rate. A generalized biomass production model is applied on two CPUE and catch datasets (1976-1996 and 1976-2006) using informative priors. The population growth rate prior has a diffuse distribution and is very sensitive to young of the year mortality rate. Thus, we compared the performances of this prior with a commonly used prior for tunas population growth rate. We...
Tipo: Text Palavras-chave: Bayesian model; Population growth rate; Uncertainties; Natural mortality; CPUE; Tuna fisheries; Thunnus thynnus.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00192/30281/28756.pdf
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Aerial surveys to monitor bluefin tuna abundance and track efficiency of management measures ArchiMer
Bauer, Robert; Bonhommeau, Sylvain; Brisset, Blandine; Fromentin, Jean-marc.
Conservation and management measures for exploited fish species rely on our ability to monitor variations in population abundance. In the case of the eastern stock of Atlantic bluefin tuna (ABFT), recent changes in management policies have strongly affected the reliability of fishery-dependent indicators due to drastic changes in fishing season/area, fisheries selectivity and strategy. However, fishery-independent indices of abundance are rare for large pelagic fish, and obtaining them is often costly and labor intensive. Here, we show that scientific aerial surveys are an appropriate tool for monitoring juvenile bluefin tuna abundance in the Mediterranean. We present an abundance index based on 62 aerial surveys conducted since 2000, using 2 statistical...
Tipo: Text Palavras-chave: Thunnus thynnus; Index of abundance; Fishery-independent; Gulf of Lions; Mediterranean Sea; Strip transect; Distance sampling.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00281/39192/45096.pdf
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