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	Provedor de dados Nature Precedings (6) Autor Alexander D. Diehl (6) Bjoern Peters (3) Christopher J. Mungall (3) Richard H. Scheuermann (3) Terrence F. Meehan (3) Alison D. Augustine (2) Anastasia Nijnik (2) Anna Maria Masci (2) Bali Pulendran (2) Elizabeth S. Gold (2) Judith A. Blake (2) Lindsay G. Cowell (2) Martin S. Zand (2) Penelope A. Morel (2) Q. Alison Yao (2) Timothy A. Gondré-Lewis (2) Alan Ruttenberg (1) Amelia Ireland (1) Barry Smith (1) Brian D. Athey (1) Mais... Palavra-chave Bioinformatics (6) Immunology (5) Data Standards (3) Biotechnology (1) Cancer (1) Developmental Biology (1) Genetics & Genomics (1) Microbiology (1) Molecular Cell Biology (1) Neuroscience (1) Mais... Tipo do documento Manuscript (2) Poster (2) Presentation (2) Ano 2011 (1) 2009 (5) País United Kingdom (6)		Ordenar por:  Relevância Autor Título Ano Registros recuperados: 6 Primeira ... 1 ... Última Hematopoietic Cell Types: Prototype for a Revised Cell Ontology Nature Precedings Alexander D. Diehl; Alison D. Augustine; Judith A. Blake; Lindsay G. Cowell; Elizabeth S. Gold; Timothy A. Gondré-Lewis; Anna Maria Masci; Terrence F. Meehan; Penelope A. Morel; Anastasia Nijnik; Bjoern Peters; Bali Pulendran; Richard H. Scheuermann; Q. Alison Yao; Martin S. Zand; Christopher J. Mungall. The Cell Ontology (CL) aims for the representation of in vivo and in vitro cell types from all of biology. Although the CL is a reference ontology of the OBO Foundry, it requires extensive revision to bring it up to current standards for biomedical ontologies, both in its structure and its coverage of various subfields of biology. A recent workshop sponsored by NIAID on hematopoietic cell types in the CL addressed both issues. The section of the ontology dealing with hematopoietic cells was extensively revised, and plans were set for structuring these cell type terms as cross-products with logical definitions built from relationships to external ontologies, such as the Protein Ontology and the Gene Ontology. The methods and improvement to the CL in... Tipo: Manuscript Palavras-chave: Immunology; Bioinformatics; Data Standards. Ano: 2009 URL: http://precedings.nature.com/documents/3635/version/1 VO: Vaccine Ontology Nature Precedings Yongqun He; Lindsay Cowell; Alexander D. Diehl; Harry Mobley; Bjoern Peters; Alan Ruttenberg; Richard H. Scheuermann; Ryan R. Brinkman; Melanie Courtot; Chris Mungall; Zuoshuang Xiang; Fang Chen; Thomas Todd; Lesley Colby; Howard Rush; Trish Whetzel; Mark A. Musen; Brian D. Athey; Gilbert S. Omenn; Barry Smith. Vaccine research, as well as the development, testing, clinical trials, and commercial uses of vaccines involve complex processes with various biological data that include gene and protein expression, analysis of molecular and cellular interactions, study of tissue and whole body responses, and extensive epidemiological modeling. Although many data resources are available to meet different aspects of vaccine needs, it remains a challenge how we are to standardize vaccine annotation, integrate data about varied vaccine types and resources, and support advanced vaccine data analysis and inference. To address these problems, the community-based Vaccine Ontology (VO,... Tipo: Poster Palavras-chave: Biotechnology; Immunology; Microbiology; Bioinformatics. Ano: 2009 URL: http://precedings.nature.com/documents/3552/version/1 Modularization for the Cell Ontology Nature Precedings Christopher J. Mungall; Melissa A. Haendel; Amelia Ireland; Shahid Manzoor; Terry Meehan; David Osumi-Sutherland; Carlo Torniai; Alexander D. Diehl. One of the premises of the OBO Foundry is that development of an orthogonal set of ontologies will increase domain expert contributions and logical interoperability, and decrease maintenance workload. For these reasons, the Cell Ontology (CL) is being re-engineered. This process requires the extraction of sub-modules from existing OBO ontologies, which presents a number of practical engineering challenges. These extracted modules may be intended to cover a narrow or a broad set of species. In addition, applications and resources that make use of the Cell Ontology have particular modularization requirements, such as the ability to extract custom subsets or unions of the Cell Ontology with other OBO ontologies. These extracted modules may be intended to... Tipo: Manuscript Palavras-chave: Bioinformatics; Data Standards. Ano: 2011 URL: http://precedings.nature.com/documents/6685/version/1 Literature Triage and Indexing in the Mouse Genome Informatics (MGI) Group Nature Precedings Randal P. Babiuk; Dale A. Begley; Susan M. Bello; Dirck W. Bradt; Donna L. Burkart; Howard Dene; Alexander D. Diehl; Harold J. Drabkin; Jacqueline H. Finger; Terry F. Hayamizu; David P. Hill; Michelle Knowlton; Debra M. Krupke; Ira Lu; Lois J. Maltais; Monica McAndrews-Hill; Terrence F. Meehan; Li Ni; Hiroaki Onda; Dmitry Sitnikov; Constance M. Smith; Cynthia L. Smith; Monika Tomczuk. The Mouse Genome Informatics (MGI; "http://www.informatics.jax.org":http://www.informatics.jax.org) group is comprised of several collaborating projects including the Mouse Genome Database (MGD) Project, the Gene Expression Database (GXD) Project, the Mouse Tumor Biology (MTB) Database Project, and the Gene Ontology (GO) Project. Literature identification and collection is performed cooperatively amongst the groups.

In recent years many institutional libraries have transitioned from a focus largely on print holdings to one of electronic access to journals. This change has necessitated adaptation on the part of the MGI curatorial group. Whereas the majority of journals covered by the group used to be... Tipo: Poster Palavras-chave: Cancer; Developmental Biology; Genetics & Genomics; Immunology; Molecular Cell Biology; Neuroscience; Bioinformatics. Ano: 2009 URL: http://precedings.nature.com/documents/3246/version/1 Hematopoietic Cell Types: Prototype for a Revised Cell Ontology Nature Precedings Alexander D. Diehl; Alison D. Augustine; Judith A. Blake; Lindsay G. Cowell; Elizabeth S. Gold; Timothy A. Gondré-Lewis; Anna Maria Masci; Terrence F. Meehan; Penelope A. Morel; Anastasia Nijnik; Bjoern Peters; Bali Pulendran; Richard H. Scheuermann; Q. Alison Yao; Martin S. Zand; Christopher J. Mungall. The Cell Ontology (CL) is an OBO Foundry candidate ontology intended for the representation of cell types from all of biology. A recent workshop sponsored by NIAID on hematopoietic cell types in the CL addressed issues of both the content and structure of the CL. The section of the ontology dealing with hematopoietic cells was extensively revised, and plans were made for restructuring these cell type terms as cross-products with logical definitions based on relationships to external ontologies, such as the Protein Ontology and the Gene Ontology. The improvements to the CL in this area represent a paradigm for the future revision of the whole of the CL. Tipo: Presentation Palavras-chave: Immunology; Bioinformatics; Data Standards. Ano: 2009 URL: http://precedings.nature.com/documents/3543/version/2 Hematopoietic Cell Types: Prototype for a Revised Cell Ontology Nature Precedings Alexander D. Diehl. The Cell Ontology (CL) is an OBO Foundry candidate ontology intended for the representation of cell types from all of biology. A recent workshop sponsored by NIAID on hematopoietic cell types in the CL addressed issues of both the content and structure of the CL. The section of the ontology dealing with hematopoietic cells was extensively revised, and plans were made for restructuring these cell type terms as cross-products with logical definitions based on relationships to external ontologies, such as the Protein Ontology and the Gene Ontology. The improvements to the CL in this area represent a paradigm for the future revision of the whole of the CL. Tipo: Presentation Palavras-chave: Immunology; Bioinformatics. Ano: 2009 URL: http://precedings.nature.com/documents/3543/version/1 Registros recuperados: 6 Primeira ... 1 ... Última

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