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| Boavida, Joana; Becheler, Ronan; Choquet, Marvin; Frank, Norbert; Taviani, Marco; Bourillet, Jean-francois; Meistertzheim, Anne‐leila; Grehan, Anthony; Savini, Alessandra; Arnaud-haond, Sophie. |
| Aim To infer cold‐water corals’ (CWC) post‐glacial phylogeography and assess the role of Mediterranean Sea glacial refugia as origins for the recolonization of the northeastern Atlantic Ocean. Location Northeastern Atlantic Ocean and Mediterranean Sea. Taxon Lophelia pertusa, Madrepora oculata. Methods We sampled CWC using remotely operated vehicles and one sediment core for coral and sediment dating. We characterized spatial genetic patterns (microsatellites and a nuclear gene fragment) using networks, clustering and measures of genetic differentiation. Results Inferences from microsatellite and sequence data were congruent, and showed a contrast between the two CWC species. Populations of L. pertusa present a dominant pioneer haplotype, local haplotype... |
| Tipo: Text |
Palavras-chave: Cold-water corals; Deep-sea; Glacial marine refugia; Last Glacial Maximum; Lophelia pertusa; Madrepora oculata; Marine phylogeography. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00487/59864/63140.pdf |
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| Becheler, Ronan; Masson, Jean-pierre; Arnaud-haond, Sophie; Halkett, Fabien; Mariette, Stephanie; Guillemin, Marie-laure; Valero, Myriam; Destombe, Christophe; Stoeckel, Solenn. |
| Partial clonality is commonly used in Eukaryotes and has large consequences for their evolution and ecology. Assessing accurately the relative importance of clonal versus sexual reproduction matters for studying and managing such species. Here, we proposed a Bayesian approach, ClonEstiMate, to infer rates of clonality c from populations sampled twice over a short time interval, ideally one generation time. The method relies on the likelihood of the transitions between genotype frequencies of ancestral and descendent populations, using an extended Wright-Fisher model explicitly integrating reproductive modes. Our model provides posterior probability distribution of inferred c, given the assumed rates of mutation, as well as inbreeding and selfing when... |
| Tipo: Text |
Palavras-chave: Inbreeding; Instantaneous inference; Population genetics model; Rate of asexuality; Selfing. |
| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00390/50187/50810.pdf |
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| Becheler, Ronan; Diekmann, O.; Hily, Christian; Moalic, Yann; Arnaud-haond, S.. |
| Seagrasses structure some of the world's key coastal ecosystems presently in decline due to human activities and global change. The ability to cope with environmental changes and the possibilities for shifts in distribution range depend largely on their evolvability and dispersal potential. As large-scale data usually show strong genetic structure for seagrasses, finer-grained work is needed to understand the local processes of dispersal, recruitment and colonization that could explain the apparent lack of exchange across large distances. We aimed to assess the fine-grained genetic structure of one of the most important and widely distributed seagrasses, Zostera marina, from seven meadows in Brittany, France. Both classic population genetics and network... |
| Tipo: Text |
Palavras-chave: Clonality; Dispersal; Ecotype; Network analysis; Population; Zostera marina. |
| Ano: 2010 |
URL: http://archimer.ifremer.fr/doc/00006/11690/8499.pdf |
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| Arnaud-haond, Sophie; Van Den Beld, Inge; Becheler, Ronan; Orejas, C.; Menot, Lenaick; Frank, N.; Grehan, A.; Bourillet, Jean-francois. |
| The scleractinian coral Lophelia pertusa has been the focus of deep-sea research since the recognition of the vast extent of coral reefs in North Atlantic waters two decades ago, long after their existence was mentioned by fishermen. These reefs where shown to provide habitat, concentrate biomass and act as feeding or nursery grounds for many species, including those targeted by commercial fisheries. Thus, the attention given to this cold-water coral (CWC) species from researchers and the wider public has increased. Consequently, new research programs triggered research to determine the full extent of the corals geographic distribution and ecological dynamics of “Lophelia reefs”. The present study is based on a systematic standardised sampling design to... |
| Tipo: Text |
Palavras-chave: Lophelia pertusa; Madrepora oculata; False-chimaera colonies; Cold water corals (CWC); Bay of Biscay; Ireland; Iceland. |
| Ano: 2017 |
URL: http://archimer.ifremer.fr/doc/00274/38530/37048.pdf |
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| Luiz, Osmar J.; Allen, Andrew P.; Robertson, D. Ross; Floeter, Sergio R.; Kulbicki, Michel; Vigliola, Laurent; Becheler, Ronan; Madin, Joshua S.. |
| Most marine organisms disperse via ocean currents as larvae, so it is often assumed that larval-stage duration is the primary determinant of geographic range size. However, empirical tests of this relationship have yielded mixed results, and alternative hypotheses have rarely been considered. Here we assess the relative influence of adult and larval-traits on geographic range size using a global dataset encompassing 590 species of tropical reef fishes in 47 families, the largest compilation of such data to date for any marine group. We analyze this database using linear mixed-effect models to control for phylogeny and geographical limits on range size. Our analysis indicates that three adult traits likely to affect the capacity of new colonizers to survive... |
| Tipo: Text |
Palavras-chave: Macroecology; Marine dispersal; Colonization. |
| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00161/27240/25457.pdf |
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| Becheler, Ronan; Cassone, Anne-laure; Noel, Philippe; Mouchel, Olivier; Morrison, Cheryl L.; Arnaud-haond, Sophie. |
| Sampling in the deep sea is a technical challenge, which has hindered the acquisition of robust datasets that are necessary to determine the fine-grained biological patterns and processes that may shape genetic diversity. Estimates of the extent of clonality in deep-sea species, despite the importance of clonality in shaping the local dynamics and evolutionary trajectories, have been largely obscured by such limitations. Cold-water coral reefs along European margins are formed mainly by two reef-building species, Lophelia pertusa and Madrepora oculata. Here we present a fine-grained analysis of the genotypic and genetic composition of reefs occurring in the Bay of Biscay, based on an innovative deep-sea sampling protocol. This strategy was designed to be... |
| Tipo: Text |
Palavras-chave: Cold-water coral; Lophelia pertusa; Madrepora oculata; Clonality; Fine-grained spatial genetic structure; Standardized sampling. |
| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00300/41117/40291.pdf |
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| Becheler, Ronan; Benkara, Elsa; Moalic, Yann; Hily, Christian; Arnaud-haond, Sophie. |
| Theoretically, the dynamics of clonal and genetic diversities of clonal plant populations are strongly influenced by the competition among clones and rate of seedling recruitment, but little empirical assessment has been made of such dynamics through temporal genetic surveys. We aimed to quantify 3 years of evolution in the clonal and genetic composition of Zostera marina meadows, comparing parameters describing clonal architecture and genetic diversity at nine microsatellite markers. Variations in clonal structure revealed a decrease in the evenness of ramet distribution among genets. This illustrates the increasing dominance of some clonal lineages (multilocus lineages, MLLs) in populations. Despite the persistence of these MLLs over time, genetic... |
| Tipo: Text |
Palavras-chave: Clonality; Seagrass; Spatio-temporal genetic structure; Zostera marina. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00181/29254/32174.pdf |
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