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Fifteen years of data from the PELGAS integrated survey (2000-2015): what have we learned on the Bay of Biscay pelagic ecosystem? ArchiMer
Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jérôme; Authier, Matthieu; Berger, Laurent; Doremus, Ghislain; Bourriau, Paul; Grellier, Patrick; Masse, Jacques; Sanchez, Florence.
The initial focus of the PELGAS integrated survey was to assess the small pelagic fish biomass in the Bay of Biscay in springtime, for fisheries management purposes. Sampling has been extended to produce long-term time-series of spatially-explicit data and indices, describing the main pelagic ecosystem components: hydrology, phytoplankton, mesozooplankton, fish and megafauna. A collaborative analysis of these datasets has brought new insights on the Bay of Biscay pelagic ecosystem summarized here. New results on single ecosystem components include an analysis of water samples to groundtruth the results of an ocean color algorithm aiming at detecting phytoplanktonic coccolithophores. New insights on mesozooplankton spatio-temporal distribution and energy...
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Ano: 2018 URL: http://archimer.ifremer.fr/doc/00445/55665/57331.pdf
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Bubble sweep-down occurrence characterization on Research Vessels ArchiMer
Delacroix, Sylvain; Germain, Gregory; Berger, Laurent; Billard, Jean-yves.
Bubble sweep-down on oceanographic vessels generates acoustic perturbations. We propose in this work to characterize the sub-surface bubbles occurrence conditions from acoustic data analysis acquired during surveys in relatively shallow water with the IFREMER research vessels Thalassa and Pourquoi Pas?. The methodology of data analysis used in this work allows us to characterize the sailing conditions influence on bubble sweep-down occurrence. The correlation between sailing conditions and acoustic perturbations tends to demonstrate that the presence of bubbles under the hull is clearly related to the wind speed and natural aeration, and that surface bubbles are advected differently in the water column by the two vessels
Tipo: Text Palavras-chave: Bubble sweep-down; Acoustic perturbation; Ship motion.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00294/40557/39632.pdf
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Overview of recent progress in fisheries acoustics made by Ifremer with examples from the Bay of Biscay ArchiMer
Trenkel, Verena; Berger, Laurent; Bourguignon, Sebastien; Doray, Mathieu; Fablet, Ronan; Masse, Jacques; Mazauric, Valerie; Poncelet, Cyrille; Quemener, Gael; Scalabrin, Carla; Villalobos, Hector.
This paper provides an overview of the progress Ifremer has made recently in fisheries acoustics and the study of small pelagic fish by: i) pushing observation frontiers using a range of platforms including an autonomous underwater vehicle, AUV, ii) developing measuring instruments and methods and iii) studying fish distributions. Presently, information from several frequencies of single-beam echosounders is routinely collected together with data from the ME70 multibeam echosounder. For onboard data acquisition control the HERMES software was developed. The new MOVIES 3D software includes modules for simultaneous realistic 3D visualisation and post-processing such as bottom detection, school extraction and calculation of descriptors and integration of all...
Tipo: Text Palavras-chave: Multibeam echosounder; Oceanographic AUV; Pelagic fish; Fisheries acoustics.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00000/11165/7517.pdf
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Calibration of acoustic instruments ArchiMer
Demer, Da; Berger, Laurent; Bernasconi, M; Bethke, E; Boswell, K; Chu, D; Domokos, R; Dunford, A; Fassler, S; Gauthier, S; Hufnagle, Lt; Jech, Jm; Le Bouffant, Naig; Lebourges-dhaussy, Anne; Lurton, Xavier; Macaulay, Gj; Perrot, Yannick; Ryan, T; Parker-stetter, S; Stienessen, S; Weber, T; Williamson, N.
Acoustic instrument calibration is fundamental to the quantitative use of its data for estimating aquatic resource abundance. Regular calibrations also allow instrument performance to be monitored to detect changes due to the environment or component dynamics, degradation, or failure. This is the second ICES Cooperative Research Report (CRR) focussed on calibrations of acoustic instruments. The first, CRR No. 144 (Foote et al., 1987), was published during the era of analogue electronics more than a quarter of a century ago. Since then, not only has the acoustic equipment improved vastly with digital electronics and signal processing, but the techniques for applying them to studies of marine organisms have both advanced and diversified. Motivating,...
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Ano: 2015 URL: https://archimer.ifremer.fr/doc/00586/69821/67711.pdf
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Evaluation of a wideband echosounder for fisheries and marine ecosystem science ArchiMer
Demer, Da; Andersen, Ln; Bassett, C; Berger, Laurent; Chu, D; Condiotty, J; Cutter, Gr.
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Ano: 2017 URL: https://archimer.ifremer.fr/doc/00585/69730/67619.pdf
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The new fisheries multibeam echosounder ME70: description and expected contribution to fisheries research ArchiMer
Trenkel, Verena; Mazauric, Valerie; Berger, Laurent.
Recently, Simrad in collaboration with Ifremer developed a calibrated, multibeam, vertical echosounder (ME70) for fisheries research. We describe its capabilities and technical limitations. The ME70 has up to 45 beams with distinct frequencies in the range 70120 kHz, spanning at most 150 degrees. All beams are stabilized in vessel roll and pitch. It has reduced side-lobe levels, up to -70 dB (two-way) instead of the -2S dB (one-way) of conventional systems. We outline research areas for which the ME70 might provide new types of information and hence lead to novel insights. We illustrate the potential contributions with datasets collected in the English Channel and on the continental-shelf break of the Bay of Biscay. Finally, future research and...
Tipo: Text Palavras-chave: Three dimensional; Behaviour; Acoustics; Abundance.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4117.pdf
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Analysis of calibrated seafloor backscatter for habitat classification methodology and case study of 158 spots in the Bay of Biscay and Celtic Sea ArchiMer
Fezzani, Ridha; Berger, Laurent.
An automated signal-based method was developed in order to analyse the seafloor backscatter data logged by calibrated multibeam echosounder. The processing consists first in the clustering of each survey sub-area into a small number of homogeneous sediment types, based on the backscatter average level at one or several incidence angles. Second, it uses their local average angular response to extract discriminant descriptors, obtained by fitting the field data to the Generic Seafloor Acoustic Backscatter parametric model. Third, the descriptors are used for seafloor type classification. The method was tested on the multi-year data recorded by a calibrated 90-kHz Simrad ME70 multibeam sonar operated in the Bay of Biscay, France and Celtic Sea, Ireland. It...
Tipo: Text Palavras-chave: Multibeam; Reflectivity; Backscatter angular response; Segmentation.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00423/53465/56648.pdf
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Characterization of sound scattering layers in the Bay of Biscay using broadband acoustics, nets and video ArchiMer
Blanluet, Arthur; Doray, Mathieu; Berger, Laurent; Romagnan, Jean-baptiste; Le Bouffant, Naig; Lehuta, Sigrid; Petitgas, Pierre.
Sound scattering layers (SSLs) are observed over a broad range of spatio-temporal scales and geographical areas. SSLs represent a large biomass, likely involved in the biological carbon pump and the structure of marine trophic webs. Yet, the taxonomic composition remains largely unknown for many SSLs. To investigate the challenges of SSL sampling, we performed a survey in a small study area in the Northern Bay of Biscay (France) by combining broadband and narrowband acoustics, net sampling, imagery and video recordings. In order to identify organisms contributing to the observed SSLs, we compared measured frequency spectra to forward predicted spectra derived from biological data. Furthermore, to assess the confidence in SSL characterization, we evaluated...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00588/70035/67955.pdf
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Acoustic monitoring of gas emissions from the seafloor. Part I: quantifying the volumetric flow of bubbles ArchiMer
Leblond, Isabelle; Scalabrin, Carla; Berger, Laurent.
Three decades of continuous ocean exploration have led us to identify subsurface fluid related processes as a key phenomenon in marine earth science research. The number of seep areas located on the seafloor has been constantly increasing with the use of multi-scale imagery techniques. Due to recent advances in transducer technology and computer processing, multibeam echosounders are now commonly used to detect submarine gas seeps escaping from the seafloor into the water column. A growing number of en-route surveys shows that sites of gas emissions escaping from the seafloor are much more numerous than previously thought. Estimating the temporal variability of the gas flow rate and volumes escaping from the seafloor has thus become a challenge of relevant...
Tipo: Text Palavras-chave: Seafloor observatory; Water column acoustics; Forward and inverse modeling; Fisheries echosounders; Acoustic backscattering; Gas emissions; Bubbles; Water tank experiments.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00192/30336/29094.pdf
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Data products for fish stocks and ecosystem assessment:the PELGAS survey example ArchiMer
Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jérôme; Berger, Laurent; Dorémus, Ghislain; Bourriau, Paul; Grellier, Patrick; Massé, Jacques; Sanchez, Florence.
The initial objective of the PELGAS integrated survey was to assess the biomass of small pelagic fish in the Bay of Biscay in spring. Sampling has been extended to study the spatial structure and dynamics of the pelagic ecosystem in springtime. The PELGAS survey has produced since 2000 long-term time-series of spatially-explicit data and indices, describing the main pelagic ecosystem components: hydrology, phytoplankton, mesozooplankton, fish and megafauna. In addition to small pelagic fish biomass estimates used for fish stock assessment, the survey now delivers two types of ecosystem products: standard gridded maps of ecosystem parameters, and a time series dataset of indicators of the Bay of Biscay pelagic ecosystem state. The evolution of the PELGAS...
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Ano: 2018 URL: http://archimer.ifremer.fr/doc/00457/56844/58693.pdf
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Spatial Statistics of Objects in 3-D Sonar Images: Application to Fisheries Acoustics ArchiMer
Lefort, Riwal; Fablet, Ronan; Berger, Laurent; Boucher, Jm.
In this letter, we address the characterization of objects in 3-D sonar images of the water column obtained by a multibeam echo sounder. Compared with classic 2-D images from a monobeam echo sounder, these 3-D images provide finer scale observation of the pelagic biomasses and new tools to characterize 3-D distributions. By viewing object patterns as realizations of spatial point processes, we investigate descriptive spatial statistics. This method is then applied to 3-D fisheries acoustics data set for characterization of the distribution of pelagic fish schools. Reported experiments illustrate the relevance of the proposed descriptors. The comparison of our method with 2-D sonar data analysis further demonstrates the information gain from using 3-D sonar...
Tipo: Text Palavras-chave: Fisheries acoustics; Multibeam sensor; Object patterns in images; Point processes; Spatial statistics.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00056/16769/14270.pdf
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In-situ measurements of the individual acoustic backscatter of European anchovy (Engraulis encrasicolus) and sardine (Sardina Pilchardus), with concurrent optical identification ArchiMer
Doray, Mathieu; Berger, Laurent; Coail, Jean-yves; Vacherot, Jean-philippe; Bavouzet, Gerard; Petitgas, Pierre.
The lack of specific Target Strength (TS) values for European anchovy (Engraulis encrasicolus) and sardine (Sardina Pilchardus) in the literature has been pointed out by the Working Group on Acoustic and Egg Surveys for Sardine and Anchovy in ICES Areas VIII and IX. The need for specific small pelagics TS measurements conducted in controlled environments was recognized by the group, to further investigate the adequacy of TS length equation used to derive fish stock estimates for clupeids in European waters. TS is a stochastic variable which largely varies in the wild, in response to changes in physical (tilt angle, depth) or biological (physiology) single fish attributes. The first requirement to make sound TS measurement is to accurately identify of the...
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00055/16637/14133.pdf
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Methodological developments for improved bottom detection with the ME70 multibeam echosounder ArchiMer
Bourguignon, Sebastien; Berger, Laurent; Scalabrin, Carla; Fablet, Ronan; Mazauric, Valerie.
Multibeam echosounders and sonars are increasingly used in fisheries acoustics for abundance estimation. Because of reduced side-lobe levels in the beam-array pattern, the new Simrad ME70 multibeam echosounder installed on board Ifremer's RV "Thalassa" has been designed to allow improved detection of fish close to the seabed. To achieve this objective, precise and unambiguous detection of the water-bottom interface is required, which raises the issue of bottom detection, especially in the outer beams. The bottom-detection method implemented in the ME70 is based on the amplitude of the reverberated echo. Such an approach is efficient for vertical beams, but less accurate for beams with higher incidence angles, typically 30°–40° for the beam configurations...
Tipo: Text Palavras-chave: Multibeam echosounder; Fisheries; Bottom detection; Acoustics.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6629.pdf
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A method for reducing uncertainty in estimates of fish-school frequency response using data from multifrequency and multibeam echosounders ArchiMer
Berger, Laurent; Poncelet, Cyrille; Trenkel, Verena.
Fish schools can be insonified simultaneously with multifrequency echosounders (e.g. Simrad EK60s) and a multibeam echosounder (e.g. Simrad ME70). This paper presents a method for combining these data to improve estimates of the relative frequency response r(f) of fish schools. Values of r(f) are now commonly used to classify echoes in fishery surveys. The data from the roll- and pitch-stabilized, high-resolution ME70 are used to correct beam-width effects in the multifrequency EK60 data. First, knowing the exact position and orientation of the transducers and the position of the vessel, the echoes are placed into a common geographic coordinate system. Then, the EK60 data are rejected if they do not include a significant percentage of the fish school...
Tipo: Text Palavras-chave: Species identification; Scomber scombrus; Sardina pilchardus; Pelagic fish; Acoustics.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6590.pdf
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The PELGAS survey: ship-based integrated monitoring of the Bay of Biscay pelagic ecosystem ArchiMer
Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jerome; Authier, Matthieu; Sanchez, Florence; Berger, Laurent; Doremus, Ghislain; Bourriau, Paul; Grellier, Patrick; Masse, Jacques.
The Pélagiques Gascogne (PELGAS) integrated survey has been developed by a multidisciplinary team of Ifremer and La Rochelle University scientists since 2000, joined by commercial fishermen in 2007. Its initial focus was to assess the biomass and predict the recruitment success of anchovy in the Bay of Biscay in spring. Taking advantage of the space and versatility of R/V Thalassa II, sampling has been progressively extended to other ecosystem components. PELGAS therefore further developed the second objective of monitoring and studying the dynamic and diverse Biscay pelagic ecosystem in springtime. The PELGAS survey model has allowed for the establishment of a long-term time-series of spatially-explicit data of the Bay of Biscay pelagic ecosystem since...
Tipo: Text Palavras-chave: Pelagic ecosystem; Integrated ecosystem monitoring survey; Marine Strategy Framework Directive; Ecosystem variability; Bay of Biscay; Fishing vessels.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00407/51801/52401.pdf
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Simple method for multiple soundings extraction for wide beamwidth echosounders ArchiMer
Le Bouffant, Naig; Berger, Laurent; Lurton, Xavier.
Bathymetric multibeam echosounders (MBES) classically improve their bottom detection resolution by increasing the number of beams with narrower beamwidths. Many independent detections are thus obtained when extracting one sounding in each beam. However when the pulse footprint on the bottom gets narrower than the beamwidth, which often happens at high incidence angles, it is possible to extract several independent bottom detections within the same beam. These high-density soundings extraction methods present a still higher interest for MBES designed with rather “wide” beams (say 3° or more), so as to offer other benefits, such as compacity, low-cost, or low sidelobe levels as for fishery applications. This paper presents a simple way to derive multiple...
Tipo: Text Palavras-chave: Multibeam; Bathymetry; Interferometry; Beamwidth.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00146/25719/23801.pdf
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Backscatter calibration of high-frequency multibeam echosounder using a reference single-beam system, on natural seafloor ArchiMer
Eleftherakis, Dimitrios; Berger, Laurent; Le Bouffant, Naig; Pacault, Anne; Augustin, Jean-marie; Lurton, Xavier.
The calibration of multibeam echosounders for backscatter measurements can be conducted efficiently and accurately using data from surveys over a reference natural area, implying appropriate measurements of the local absolute values of backscatter. Such a shallow area (20-m mean depth) has been defined and qualified in the Bay of Brest (France), and chosen as a reference area for multibeam systems operating at 200 and 300 kHz. The absolute reflectivity over the area was measured using a calibrated single-beam fishery echosounder (Simrad EK60) tilted at incidence angles varying between 0° and 60° with a step of 3°. This reference backscatter level is then compared to the average backscatter values obtained by a multibeam echosounder (here a Kongsberg EM...
Tipo: Text Palavras-chave: Calibration; Seafloor backscatter; Multibeam echosounder; Single-beam echosounder.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00429/54016/57434.pdf
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A method for controlled target strength measurements of pelagic fish, with application to European anchovy ( Engraulis encrasicolus ) ArchiMer
Doray, Mathieu; Berger, Laurent; Le Bouffant, Naig; Coail, Jean-yves; Vacherot, Jean-philippe; De La Bernardie, Xavier; Moriniere, Pierre; Lys, Elisabeth; Schwab, Romain; Petitgas, Pierre.
Measuring fish target strength (TS) in the wild is challenging because: (i) TS varies versus physical (orientation relative to the incident sound wave, size, and depth) and physiological fish attributes (maturity and condition), (ii) the target species and its aforementioned attributes are difficult to assess in near real time, and (iii) in the case of packed fish schools, accepted echoes may originate from multiple unresolved targets. We propose a method for controlled TS measurements of densely packed small pelagic fish during daytime, based on the joint use of a Remotely Operated Towed Vehicle, “EROC”, with a pelagic trawl fitted with a codend opening system, “ENROL”. EROC, equipped with a 70-kHz split-beam echosounder (Simrad EK60) and a low-light...
Tipo: Text Palavras-chave: Acoustics; Deformed cylinder model; Engraulis encrasicolus; Remotely operated vehicle; Target strength; Video.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00346/45693/45623.pdf
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Fluid emissions at the Aquitaine Shelf (Bay of Biscay, France): A biogenic origin or the expression of hydrocarbon leakage? ArchiMer
Dupre, Stephanie; Berger, Laurent; Le Bouffant, Naig; Scalabrin, Carla; Bourillet, Jean-francois.
Fishery acoustic surveys conducted in the Bay of Biscay and dedicated to monitoring and predicting pelagic ecosystem evolution reveal numerous active seeps on the Aquitaine Shelf, east of the shelf break, at water depths ranging from 140 to 185 m. Some acoustic anomalies recorded in the water column with hull-mounted single and multibeam echosounders are clearly caused by fluid escape at the seabed, most likely gases. These fluid emissions are associated at the seafloor with high backscatter subcircular small-scale mounds, on average less than 2 m high and a few metres in diameter. Based on near-bottom video and acoustic surveys, these mounds are interpreted to be by-products of gas seepage, possibly methane-derived authigenic carbonates. The spatial...
Tipo: Text Palavras-chave: Bay of Biscay; Aquitaine Shelf; Parentis Basin; Fluid; Seepage; Acoustics.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00201/31192/29888.pdf
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Converting RAW data into HAC format using HERMES. Tutorial ArchiMer
Berger, Laurent; Doray, Mathieu.
In this tutorial, you will learn how to convert hydro-acoustic data in Simrad .raw format into HAC international format (McQuinn et al., 2005).
Tipo: Text
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00487/59837/62982.pdf
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