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A quantitative estimate of the function of soft-bottom sheltered coastal areas as essential flatfish nursery habitat ArchiMer
Trimoreau, E.; Archambault, Benoit; Brind'Amour, Anik; Lepage, Mario; Guitton, Jerome; Le Pape, O..
Essential fish habitat suitability (EFHS) models and geographic information system (GIS) were combined to describe nursery habitats for three flatfish species (Solea solea, Pleuronectes platessa, Dicologlossa cuneata) in the Bay of Biscay (Western Europe), using physical parameters known or suspected to influence juvenile flatfish spatial distribution and density (i.e. bathymetry, sediment, estuarine influence and wave exposure). The effects of habitat features on juvenile distribution were first calculated from EFHS models, used to identify the habitats in which juvenile are concentrated. The EFHS model for S. solea confirmed previous findings regarding its preference for shallow soft bottom areas and provided new insights relating to the significant...
Tipo: Text Palavras-chave: Coastal and estuarine dependent species; Nursery ground; Habitat suitability models; Geographic Information System; Bay of Biscay.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00164/27546/25720.pdf
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Functional differences between fish communities on artificial and natural reefs: a case study along the French Catalan coast ArchiMer
Koeck, Barbara; Tessier, Anne; Brind'Amour, Anik; Pastor, Jeremy; Bijaoui, Benjamin; Dalias, Nicolas; Astruch, Patrick; Saragoni, Gilles; Lenfant, Philippe.
In the context of growing anthropogenic disturbances that deeply alter marine coastal ecosystems, various management tools are used to protect biodiversity, such as fishing gear limitations, fishing quotas, protected areas or the creation of artificial reefs (ARs). In contrast to the other management tools, ARs require a modification of natural habitats. We used underwater visual censuses to investigate the effect of habitat modification on the structure of fish communities by comparing a natural reef (NR) to ARs with different habitat complexity. Different fish assemblage descriptors were used to assess species- and functional- and community-level aspects of the assemblages. ARs were rapidly colonized by adult fishes and presented community compositions...
Tipo: Text Palavras-chave: Ecological niche; Fish community; Fisheries management; Functional diversity; Gulf of Lion; Habitat complexity; Mediterranean Sea; Underwater visual census.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00189/30029/28514.pdf
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Rapport de campagne de nourriceries côtières : Campagne NOURMED 2018 ArchiMer
Vaz, Sandrine; Brind'Amour, Anik; Delaunay, Damien; Baudrier, Jerome.
Dans le cadre de la mise en œuvre du programme de surveillance de la directive cadre stratégie pour le milieu marin (DCSMM), le suivi des poissons et céphalopodes démersaux des milieux meubles côtiers a été jugé prioritaire. Pour ce faire, une série de campagnes halieutiques récurrentes doit être déployée dans les nourriceries côtières, constituant des habitats essentiels pour de nombreuses espèces marines. La caractérisation de l’état écologique des peuplements et l’étude de la fonctionnalité des habitats de nourriceries s’avèrent nécessaires au calcul des indicateurs du Bon Etat Ecologique requis par la DCSMM et primordiales pour la mise en place de mesures de gestion écosystémique garantissant des usages durables. Sur la façade méditerranéenne, jusqu’à...
Tipo: Text Palavras-chave: Fonctionnement des nourriceries côtières; Communautés bentho-démersales; DCSMM; Programme de surveillance.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00506/61742/65727.pdf
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Application of Moran Eigenvector Maps (MEM) to irregular sampling designs ArchiMer
Brind'Amour, Anik; Mahevas, Stephanie; Legendre, Pierre; Bellanger, Lise.
Moran’s eigenvectors maps (MEM) are attractive mathematical objects as they are fairly simple to calculate and can be used in most studies of spatially-explicit data. There is, however, an aspect of MEM analysis that still requires some investigation: the effect of irregular sampling on their modeling performance. This study investigates empirically the behavior of MEMs under different irregularity schemes. It is focusing on simulated scenarios representing sampling designs frequently encountered in ecology. We advocate that MEMs can be computed and correctly used with data coming from irregularly designed sampling surveys, given some precautions. We suggest that when the sampling sites are equally spaced but do not cover the entire study area, the MEMs...
Tipo: Text Palavras-chave: Autocorrelation; Irregular sampling; Sampling schemes; Spatial analyses; Statistical methods.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00444/55594/57224.pdf
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Note sur les objectifs des campagnes scientifiques "Nourriceries" des zones côtières à substrat meuble ArchiMer
Delaunay, Damien; Brind'Amour, Anik; Vaz, Sandrine; Baudrier, Jerome.
Les campagnes « Nourriceries » ont pour objectif de collecter des données concourant au suivi et à la compréhension du fonctionnement des nourriceries des milieux meubles côtiers en automne, ces habitats essentiels jouant un rôle déterminant dans le recrutement de juvéniles de nombreuses espèces halieutiques. La constitution d’un réseau de campagnes sur les 3 façades métropolitaines consolide les connaissances sur les milieux côtiers et permet l'évaluation du bon état écologique de cette composante de l'écosystème dans le cadre de la mise en oeuvre de la DCSMM.
Tipo: Text
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00499/61057/64505.pdf
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Grands invertébrés et poissons observés par les campagnes scientifiques. Atlas de distribution. Bilan 2008 ArchiMer
Trenkel, Verena; Berthele, Olivier; Lorance, Pascal; Bertrand, Jacques; Brind'Amour, Anik; Cochard, Marie-laure; Coppin, Franck; Leaute, Jean-pierre; Mahe, Jean-claude; Morin, Jocelyne; Rochet, Marie-joelle; Salaun, Michele; Souplet, Arnauld; Verin, Yves.
Depuis une vingtaine d'années, l'Ifremer organise des campagnes de pêche scientifique en mer du Nord, Manche, Atlantique et Méditerranée concernant les ressources pélagiques, démersales et benthiques. L'objectif prioritaire est de produire des indices d'abondance des principales espèces commerciales. Elles recueillent également des données sur les espèces capturées non commerciales. Les campagnes sont réalisées selon des plans d'échantillonnage standardisés. L'engin de pêche et son gréement, la position des stations, le tri des captures, les prélèvements biologiques suivent des protocoles fixés. Chaque zone étudiée est découpée en fonction de la profondeur, de la latitude ou d'autres critères. L'échantillonnage prévoit un nombre de traits de chalut...
Tipo: Text Palavras-chave: Populations; Halieutique; Bulletin; Méditerranée; Golfe de Gascogne; Manche; Mer du Nord; France; Pêche; Campagnes à la mer; Atlas; Survey; Mediterranean Sea; Bay of Biscay; English Channel; North Sea; France; Populations; Fishery science; Bulletin; Atlas.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/rapport-6976.pdf
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Assessment of impacts from human activities on ecosystem components in the Bay of Biscay in the early 1990s ArchiMer
Lorance, Pascal; Bertrand, Jacques; Brind'Amour, Anik; Rochet, Marie-joelle; Trenkel, Verena.
The ecosystem-based approach to fisheries management and, more specifically, the European Marine Strategy Framework Directive require the assessment of the state and dynamics of an ecosystem in order to determine suitable management strategies. This paper takes an analytical approach to assess the state of the Bay of Biscay ecosystem in the early 1990s, chosen as a period of reference because key monitoring data series have been collected since then. To assess the state of the ecosystem, the pressures exerted by six broad categories of human activities were examined. A literature review of the ecosystem components was made and a component tree was tailored according to data availability. Data rich components were subdivided into subcomponents for their...
Tipo: Text Palavras-chave: Reference state; Ecosystem based management; Human pressure; Inventory; Atlantic Ocean.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00000/11164/7520.pdf
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Spatial organization of a sedimentary macrobenthic community located on the West African Equatorial margin ArchiMer
Brind'Amour, Anik; Menot, Lenaick; Galeron, Joelle; Crassous, Philippe.
Multiscale variability of a macrobenthic community inhabiting fine sediments on the West African Equatorial margin was assessed during three cruises as part of the BIOZAIRE research program. Spatial scales ranged from 15 to 550 m (within station) and from 1000 to 7000 m (between stations). Principal Coordinates of Neighbour Matrices (PCNM) allowed the detection of multiscale patterns of variability within a location, while a binary coding of the sampling stations was used at broad spatial scales. Significant patterns were observed at 170 and >4000 m. The two spatial scales displayed similar biotic responses, with the Scaphopoda and Bivalvia having patterns that were opposite to the Pholoidae. A spatio-temporal patchwork of environmental variables might...
Tipo: Text Palavras-chave: Spatial distribution; PCNM; Multiscale analyses; Macrobenthic communities; Habitat patches; BIOZAIRE.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6508.pdf
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Novel approach for testing the food limitation hypothesis in estuarine and coastal fish nurseries ArchiMer
Tableau, Adrien; Le Bris, H; Saulnier, E; Le Pape, Olivier; Brind'Amour, Anik.
Survival success of early life stages of fish is regulated by density-dependent effects, but the limiting factors explaining these effects have not been well identified. In coastal habitats, juveniles of many fish species occur in high concentrations and possibly compete for food resources. This study compared the ratio of food consumption to benthic prey production to test whether food availability is a major factor defining the carrying capacity of fish nurseries. We developed a method to quantify the exploitation efficiency (also called ecotrophic efficiency) of the juvenile fish feeding on benthic prey, expressed as a ratio of food consumption to food production. This method includes many sources of uncertainty and a key parameter of prey...
Tipo: Text Palavras-chave: Exploitation efficiency; Predator-prey relationship; Food consumption; Fish juvenile; Nursery habitat; Bioenergetics; Density dependence; Carrying capacity; Secondary production.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00588/70009/67925.pdf
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Large-scale spatio-temporal monitoring highlights hotspots of demersal fish diversity in the Mediterranean Sea ArchiMer
Granger, Victoria; Fromentin, Jean-marc; Bez, Nicolas; Relini, Giulio; Meynard, Christine N.; Gaertner, Jean-claude; Maiorano, Porzia; Garcia Ruiz, Cristina; Follesa, Cristina; Gristina, Michele; Peristeraki, Panagiota; Brind'Amour, Anik; Carbonara, Pierluigi; Charilaou, Charis; Esteban, Antonio; Jadaud, Angelique; Joksimovic, Aleksandar; Kallianiotis, Argyris; Kolitari, Jerina; Manfredi, Chiara; Massuti, Enric; Mifsud, Roberta; Quetglas, Antoni; Refes, Wahid; Sbrana, Mario; Vrgoc, Nedo; Spedicato, Maria Teresa; Merigot, Bastien.
Increasing human pressures and global environmental change may severely affect the diversity of species assemblages and associated ecosystem services. Despite the recent interest in phylogenetic and functional diversity, our knowledge on large spatio-temporal patterns of demersal fish diversity sampled by trawling remains still incomplete, notably in the Mediterranean Sea, one of the most threatened marine regions of the world. We investigated large spatio-temporal diversity patterns by analysing a dataset of 19,886 hauls from 10 to 800 m depth performed annually during the last two decades by standardized scientific bottom trawl field surveys across the Mediterranean Sea, within the MEDITS program. A multi-component (eight diversity indices) and...
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Ano: 2015 URL: https://archimer.ifremer.fr/doc/00216/32743/31322.pdf
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Isotopic Diversity Indices: How Sensitive to Food Web Structure? ArchiMer
Brind'Amour, Anik; Dubois, Stanislas.
Recently revisited, the concept of niche ecology has lead to the formalisation of functional and trophic niches using stable isotope ratios. Isotopic diversity indices (IDI) derived from a set of measures assessing the dispersion/distribution of points in the δ-space were recently suggested and increasingly used in the literature. However, three main critics emerge from the use of these IDI: 1) they fail to account for the isotopic sources overlap, 2) some indices are highly sensitive to the number of species and/or the presence of rare species, and 3) the lack of standardization prevents any spatial and temporal comparisons. Using simulations we investigated the ability of six commonly used IDI to discriminate among different trophic food web structures,...
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00171/28270/26522.pdf
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Review of literature on the implementation of the MSFD to the deep Mediterranean Sea ArchiMer
Fabri, Marie-claire; Brind'Amour, Anik; Jadaud, Angelique; Galgani, Francois; Vaz, Sandrine; Taviani, Marco; Scarcella, Giuseppe; Canals, Miquel; Sanchez, Anna; Grimalt, Joan; Galil, Bella; Goren, Menachem; Schembri, Patrick; Evans, Julian; Knittweis, Leyla; Cantafaro, Anna-lucia; Fanelli, Emanuela; Carugati, Laura; Danovaro, Roberto.
Summary based on the state-of-the-art for the deep Mediterranean Sea with the final aim of identifying knowledge and gaps, descriptor by descriptor (such as lack of data, indicators, thresholds). This document is an analysis of all scientific publications, national and international reports and grey literature available on the implementation of the MSFD to the deep Mediterranean Sea.
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00426/53809/57345.pdf
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Morphological traits measured for 89 fish species sampled in the Mediterranean Sea during MEDITS scientific surveys ArchiMer
Brind'Amour, Anik; Mérigot, Bastien; Ordines, Francesc; Carbonara, Pierluigi; Follesa, Maria; Jadaud, Angelique; Maiorano, Porzia; Rabiller, Manuella; Denis, Axelle; Di Santo, Carla; Cavaillé, Thomas; Theil, Andréa; Spedicato, Maria Teresa.
The data come from organisms and pictures collected during the MEDITS annual bottom trawl surveys conducted between 2011 and 2013 (Bertrand et al. 2002). MEDITS surveys cover the continental shelf (10 m to 200 m depth) and the upper part of the continental slope (200 m to 800 m) on the Mediterranean. A total of 1511 individuals from 85 fish species were collected from seven Mediterranean areas (South Adriatic Sea, Sardinia, Gulf of Lions, around Cyprus, Mallorca, Tyrrhenian Sea, and North West Ionian Sea). A set of 14 morphological traits related to the habitat and the diet of the species were measured in the field and on pictures using the ImageJ software (version 1.47, http://imagej.nih.gov/ij/) (see Granger et al. 2015 and Brind'Amour et al. submitted...
Tipo: Dataset
Ano: 2016 URL: http://dx.doi.org/10.17882/41825
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Harmonisation des suivis de la mégafaune invertébrée benthique sur les campagnes halieutiques de l'Ifremer ArchiMer
Hazevis, Gaetan; Baudrier, Jerome; Laffargue, Pascal; Brind'Amour, Anik; Delaunay, Damien; Vaz, Sandrine.
L’Ifremer mène de nombreuses campagnes halieutiques dédiées aux peuplements benthiques et démersaux (invertébrés et poissons commerciaux/non-commerciaux). Depuis plusieurs années, en application de l’approche écosystémique, l’ensemble de la faune invertébrée benthique collectée dans les engins de pêche est suivi de manière systématique. Ces données complémentaires sont parfois recueillies à la seule initiative des équipes embarquantes, sans coordination méthodologique particulière entre les campagnes. Leur collecte ne fait souvent l’objet d’aucune obligation contractuelle alors qu’elles sont de plus en plus utilisées dans le cadre de travaux de recherche ou en appui aux politiques publiques. Ainsi, des disparités sont observées entre les campagnes,...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00502/61360/64979.pdf
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Flatfish ecology: Advances from the 10th international flatfish symposium ArchiMer
Le Pape, Olivier; Brind'Amour, Anik; Begout, Marie-laure.
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00471/58297/60815.pdf
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Food limitation of juvenile marine fish in a coastal and estuarine nursery ArchiMer
Saulnier, E.; Le Bris, H.; Tableau, Adrien; Dauvin, J.c.; Brind'Amour, Anik.
Despite their importance for species conservation and sound management of exploited living resources, the density-dependent mechanisms that regulate wild populations are among the least understood process in ecology. In many marine fish species, there is strong evidence that regulation occurs at the juvenile stage, when individuals concentrate in spatially restricted nurseries. However, little is known about the underlying mechanisms. Whether competition for food resources determines fish growth and survival is particularly controversial. We investigated whether food supply may have limited juvenile fish production (integrating both growth and survival) in a coastal and estuarine nursery in western Europe. Using a recent bioenergetics-based approach, we...
Tipo: Text Palavras-chave: Food limitation; Nursery; Juvenile fish; Predatory invertebrates; Macrofauna; English channel.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00611/72282/71080.pdf
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Morphospecies and taxonomic sufficiency of benthic megafauna in scientific bottom trawl surveys ArchiMer
Brind'Amour, Anik; Laffargue, Pascal; Morin, Jocelyne; Vaz, Sandrine; Foveau, Aurelie; Le Bris, Herve.
Scientific fisheries surveys routinely identify a large diversity of commercial and non-commercial benthic megainvertebrates that could provide useful information for Marine Strategy Framework Directive (MSFD) descriptors. Species is obviously the basic taxonomic level to which most ecological studies and theories refer. Identification at this level of organization is indeed always preferred over any other taxonomic level. Nevertheless, aggregation of species to higher taxonomic levels may be unavoidable sometimes, since errors of identification are known or suspected to occur in many surveys. Using analyses of taxonomic sufficiency (identification of organisms at various taxonomic resolutions) and groups of morphospecies (taxa identified easily by...
Tipo: Text Palavras-chave: Bay of Biscay; English Channel; North Sea; Taxonomic sufficiency; Benthic descriptor; Bottom trawl surveys.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00162/27309/25538.pdf
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Impact of the sampling protocol in assessing ecological trends in an estuarine ecosystem: The empirical example of the Gironde estuary ArchiMer
Pasquaud, Stephanie; Brind'Amour, Anik; Berthele, Olivier; Girardin, Michel; Elie, Pierre; Boet, Philippe; Lepage, Mario.
In view of the European Union (EU) requirements to diagnose and monitor the ecological status of estuarine ecosystems using fish-based indicators, we assessed the effect of the sampling protocol in meeting these objectives. Using three different sampling surveys, we evaluated the impact of four components, i.e. sampling gear, spatial extent, length of time series and temporal window analysed, on the detection of ecological trends in the Gironde estuary, estimated by different types of fish-based indicator. For each component, temporal trends of several fish-based indicators were analysed and for the final diagnosis these temporal trends were combined. The results showed that sampling gear had significant effects on the assessment of ecological trends, as...
Tipo: Text Palavras-chave: Protocol effects; Fishing gear; Ecological trend; Fish; Indicators; Estuarine ecosystem.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00049/15976/14533.pdf
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Environmental drivers explain regional variation of changes in fish and invertebrate functional groups across the Mediterranean Sea from 1994 to 2012 ArchiMer
Brind'Amour, Anik; Rochet, Marie-joelle; Ordines, Francesc; Hosack, Geoff; Berthele, Olivier; Merigot, Bastien; Carbonara, Pierluigi; Follesa, Maria Cristina; Jadaud, Angelique; Lefkaditou, Evgenia; Maiorano, Porzia; Peristeraki, Panagiota; Mannini, Alessandro; Rabiller, Manuella; Spedicato, Maria Teresa; Tserpes, George; Trenkel, Verena.
Functional groups are sets of species that play a similar role in a food web. We defined functional groups of fish species based on their morphological characteristics, while using expert knowledge for invertebrates. We measured 9 morphological traits of 72 fish species, and carried out multivariate analyses to assign fish species to functional groups. The analysis identified 9 trait-based fish functional groups to which were added 3 expert-based invertebrate functional groups. The habitat (position in the water column) and potential diet of each group were identified from the literature. Using the MEDITS bottom trawl survey data collected at 10 to 800 m depth, we calculated relative change in the 12 fish and invertebrate functional group biomasses for 12...
Tipo: Text Palavras-chave: Morphological traits; Community models; Functional network; Functional groups; Mediterranean Sea; Temporal trends; Fish; Shellfish.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00363/47382/47475.pdf
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Community structure and temperature dynamics within a mussel assemblage on the Southern East Pacific Rise ArchiMer
Sarrazin, Jozee; Walter, Cecile; Sarradin, Pierre-marie; Brind'Amour, Anik; Desbruyeres, Daniel; Briand, Patrick; Fabri, Marie-claire; Van Gaever, S; Vanreusel, A; Bachraty, Charleyne; Thiebaut, E.
The composition, biomass and diversity of the fauna in a Bathymodiolus thermophilus mussel assemblage colonizing diffuse flow areas on the SEPR is described and compared with biological characteristics of other hydrothermal assemblages. The spatio-temporal dynamics of temperatures over fine scales within the mussel habitat are characterized using newly-developed statistical approaches. Temperature data obtained from two adjacent habitats (a cirriped assemblage and a bare substratum) are compared. The results of the temperature data show that the mean temperature and the temperature variations were significantly higher in the mussel assemblage (mean temperature: 4.12 +/- 1.85 degrees C) in comparison with 2.40 +/- 0.14 degrees C in the cirriped assemblage...
Tipo: Text Palavras-chave: East Pacific Rise; Temperature dynamics; Biomass; Diversity; Bathymodiolus thermophilus; Mussel assemblage; Hydrothermal vents.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-3570.pdf
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