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Whole genome de novo sequencing of quail and grey partridge Organic Eprints
Holm, Lars-Erik; Panitz, Frank; Burt, D.; Talbot , R.; Smith, S.; Andersen, Liselotte Wesley; Bendixen, Christian.
Sufficient sequence data to initiate genome sequencing of quail and grey partridge has been obtained. The difference in assembly quality between species is a consequence of the difference in length of the sequence reads (54 cycles versus 101 cycles). Additional data will be required before sequence assembly are being performed. Specifically longer sequence reads (especially in quail) will be necessary to generate assemblies of a reasonable quality.
Tipo: Conference paper, poster, etc. Palavras-chave: "Organics" in general.
Ano: 2011 URL: http://orgprints.org/19057/4/19057.pdf
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Whole genome de novo sequencing of quail and grey partridge Organic Eprints
Holm, Lars-Erik; Panitz, Frank; Burt, D.; Talbot , R.; Smith, S.; Andersen, Liselotte Wesley; Bendixen, Christian.
Sufficient sequence data to initiate genome sequencing of quail and grey partridge has been obtained. The difference in assembly quality between species is a consequence of the difference in length of the sequence reads (54 cycles versus 101 cycles). Additional data will be required before sequence assembly are being performed. Specifically longer sequence reads (especially in quail) will be necessary to generate assemblies of a reasonable quality.
Tipo: Conference paper, poster, etc. Palavras-chave: "Organics" in general; Biodiversity and ecosystem services.
Ano: 2011 URL: http://orgprints.org/19314/7/19314.pdf
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Whole genome de novo sequencing of common quail and grey partridge Organic Eprints
Holm, Lars-Erik; Panitz, Frank; Bendixen, Christian; Talbot , R.; Smith, S.; Andersen, Liselotte Wesley; Burt, D..
The development of next-generation sequencing technologies enables rapid generation of large amounts of genome sequences. Next-generation sequencing was utilised to perform whole genome sequencing of two Phasianidae, common quail (Coturnix coturnix) and grey partridge (Perdix perdix). Sequence data corresponding to 8 to 9 fold coverage of the genomes of the two species were obtained. The amount of sequence data enabled generation of a rough de novo genome assembly suitable for either the identification of the sequence of specific genes or for use in comparative studies with other birds, such as chicken and turkey. Likewise, it was possible to identify numerous SNPs and microsatellites for use in other studies.
Tipo: Journal paper Palavras-chave: "Organics" in general.
Ano: 2013 URL: http://orgprints.org/23313/7/23313.pdf
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