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| Auffret, Pauline; Segura, Audrey; Bertin, Yolande; Klopp, Christophe; Bouchez, Olivier; Kérourédan, Monique; Bibbal, Delphine; Brugère, Hubert; Forano, Evelyne. |
| Enterohemorrhagic Escherichia coli (EHEC) with serotype O157:H7 is a major foodborne pathogen. Here, we report the draft genome sequence of EHEC O157:H7 strain MC2 isolated from cattle in France. The assembly contains 5,400,376 bp that encoded 5,914 predicted genes (5,805 protein-encoding genes and 109 RNA genes). |
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| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00404/51538/52129.pdf |
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| Segura, Audrey; Bertoni, Marine; Auffret, Pauline; Klopp, Christophe; Bouchez, Olivier; Genthon, Clemence; Durand, Alexandra; Bertin, Yolande; Forano, Evelyne. |
| Background The cattle gastrointestinal tract (GIT) is the main enterohemorrhagic Escherichia coli (EHEC) reservoir. In order to identify nutrients required for the survival or multiplication of EHEC in the bovine GIT, we compared the transcriptomes of the EHEC O157:H7 reference strain EDL933 cultured in vitro in bovine digestive contents (DCs) (rumen, small intestine and rectum) using RNA-sequencing. Results Gene expression profiles showed that EHEC EDL933 activated common but also specific metabolic pathways to survive in the different bovine DCs. Mucus-derived carbohydrates seem important in EHEC nutrition in posterior DCs (small intestine and rectum) but not in rumen content. Additional carbohydrates (xylose, ribose, mannitol, galactitol) as well as... |
| Tipo: Text |
Palavras-chave: EHEC O157:H7; Bovine gastrointestinal tract; RNA-seq; Metabolism; Carbon sources; Mucus-derived carbohydrates; Ethanolamine; Respiration. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00464/57563/59734.pdf |
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| Chaucheyras-durand, Frederique; Ameilbonne, Aurelie; Auffret, Pauline; Bernard, Mickael; Mialon, Marie-madeleine; Duniere, Lysiane; Forano, Evelyne. |
| Rumen microbiota is of paramount importance for ruminant digestion efficiency as the microbial fermentations supply the host animal with essential sources of energy and nitrogen. Early separation of newborns from the dam and distribution of artificial milk (Artificial Milking System or AMS) could impair rumen microbial colonization, which would not only affect rumen function but also have possible negative effects on hindgut homeostasis, and impact animal health and performance. In this study, we monitored microbial communities in the rumen and the feces of 16 lambs separated from their dams from 12 h of age and artificially fed with milk replacer and starter feed from d8, in absence or presence of a combination of the live yeast Saccharomyces cerevisiae... |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00599/71077/69395.pdf |
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| Brown, Peter; Tan, Aik-choon; El-esawi, Mohamed A.; Liehr, Thomas; Blanck, Oliver; Gladue, Douglas P.; Almeida, Gabriel M. F.; Cernava, Tomislav; Sorzano, Carlos O.; Yeung, Andy W. K.; Engel, Michael S.; Chandrasekaran, Arun Richard; Muth, Thilo; Staege, Martin S.; Daulatabad, Swapna V.; Widera, Darius; Zhang, Junpeng; Meule, Adrian; Honjo, Ken; Pourret, Olivier; Yin, Cong-cong; Zhang, Zhongheng; Cascella, Marco; Flegel, Willy A.; Goodyear, Carl S.; Van Raaij, Mark J.; Bukowy-bieryllo, Zuzanna; Campana, Luca G.; Kurniawan, Nicholas A.; Lalaouna, David; Huttner, Felix J.; Ammerman, Brooke A.; Ehret, Felix; Cobine, Paul A.; Tan, Ene-choo; Han, Hyemin; Xia, Wenfeng; Mccrum, Christopher; Dings, Ruud P. M.; Marinello, Francesco; Nilsson, Henrik; Nixon, Brett; Voskarides, Konstantinos; Yang, Long; Costa, Vincent D.; Bengtsson-palme, Johan; Bradshaw, William; Grimm, Dominik G.; Kumar, Nitin; Martis, Elvis; Prieto, Daniel; Sabnis, Sandeep C.; Amer, Said E. D. R.; Liew, Alan W. C.; Perco, Paul; Rahimi, Farid; Riva, Giuseppe; Zhang, Chongxing; Devkota, Hari P.; Ogami, Koichi; Basharat, Zarrin; Fierz, Walter; Siebers, Robert; Tan, Kok-hian; Boehme, Karen A.; Brenneisen, Peter; Brown, James A. L.; Dalrymple, Brian P.; Harvey, David J.; Ng, Grace; Werten, Sebastiaan; Bleackley, Mark; Dai, Zhanwu; Dhariwal, Raman; Gelfer, Yael; Hartmann, Marcus D.; Miotla, Pawel; Tamaian, Radu; Govender, Pragashnie; Gurney-champion, Oliver J.; Kauppila, Joonas H.; Zhang, Xiaolei; Echeverria, Natalia; Subhash, Santhilal; Sallmon, Hannes; Tofani, Marco; Bae, Taeok; Bosch, Oliver; Cuiv, Paraic O.; Danchin, Antoine; Diouf, Barthelemy; Eerola, Tuomas; Evangelou, Evangelos; Filipp, Fabian V.; Klump, Hannes; Kurgan, Lukasz; Smith, Simon S.; Terrier, Olivier; Tuttle, Neil; Ascher, David B.; Janga, Sarath C.; Schulte, Leon N.; Becker, Daniel; Browngardt, Christopher; Bush, Stephen J.; Gaullier, Guillaume; Ide, Kazuki; Meseko, Clement; Werner, Gijsbert D. A.; Zaucha, Jan; Al-farha, Abd A.; Greenwald, Noah F.; Popoola, Segun I.; Rahman, Md Shaifur; Xu, Jialin; Yang, Sunny Y.; Hiroi, Noboru; Alper, Ozgul M.; Baker, Chris I.; Bitzer, Michael; Chacko, George; Debrabant, Birgit; Dixon, Ray; Forano, Evelyne; Gilliham, Matthew; Kelly, Sarah; Klempnauer, Karl-heinz; Lidbury, Brett A.; Lin, Michael Z.; Lynch, Iseult; Ma, Wujun; Maibach, Edward W.; Mather, Diane E.; Nandakumar, Kutty S.; Ohgami, Robert S.; Parchi, Piero; Tressoldi, Patrizio; Xue, Yu; Armitage, Charles; Barraud, Pierre; Chatzitheochari, Stella; Coelho, Luis P.; Diao, Jiajie; Doxey, Andrew C.; Gobet, Angelique; Hu, Pingzhao; Kaiser, Stefan; Mitchell, Kate M.; Salama, Mohamed F.; Shabalin, Ivan G.; Song, Haijun; Stevanovic, Dejan; Yadollahpour, Ali; Zeng, Erliang; Zinke, Katharina; Alimba, C. G.; Beyene, Tariku J.; Cao, Zehong; Chan, Sherwin S.; Gatchell, Michael; Kleppe, Andreas; Piotrowski, Marcin; Torga, Gonzalo; Woldesemayat, Adugna A.; Cosacak, Mehmet I.; Haston, Scott; Ross, Stephanie A.; Williams, Richard; Wong, Alvin; Abramowitz, Matthew K.; Effiong, Andem; Lee, Senhong; Abid, Muhammad Bilal; Agarabi, Cyrus; Alaux, Cedric; Albrecht, Dirk R.; Atkins, Gerald J.; Beck, Charles R.; Bonvin, A. M. J. J.; Bourke, Emer; Brand, Thomas; Braun, Ralf J.; Bull, James A.; Cardoso, Pedro; Carter, Dee; Delahay, Robin M.; Ducommun, Bernard; Duijf, Pascal H. G.; Epp, Trevor; Eskelinen, Eeva-liisa; Fallah, Mazyar; Farber, Debora B.; Fernandez-triana, Jose; Feyerabend, Frank; Florio, Tullio; Friebe, Michael; Furuta, Saori; Gabrielsen, Mads; Gruber, Jens; Grybos, Malgorzata; Han, Qian; Heinrich, Michael; Helantera, Heikki; Huber, Michael; Jeltsch, Albert; Jiang, Fan; Josse, Claire; Jurman, Giuseppe; Kamiya, Haruyuki; De Keersmaecker, Kim; Kristiansson, Erik; De Leeuw, Frank-erik; Li, Jiuyong; Liang, Shide; Lopez-escamez, Jose A.; Lopez-ruiz, Francisco J.; Marchbank, Kevin J.; Marschalek, Rolf; Martin, Carmen S.; Miele, Adriana E.; Montagutelli, Xavier; Morcillo, Esteban; Nicoletti, Rosario; Niehof, Monika; O'Toole, Ronan; Ohtomo, Toshihiko; Oster, Henrik; Palma, Jose-alberto; Paterson, Russell; Peifer, Mark; Portilla, Maribel; Portillo, M. C.; Pritchard, Antonia L.; Pusch, Stefan; Raghava, Gajendra P. S.; Roberts, Nicola J.; Ross, Kehinde; Schuele, Birgitt; Sergeant, Kjell; Shen, Jun; Stella, Alessandro; Sukocheva, Olga; Uversky, Vladimir N.; Vanneste, Sven; Villet, Martin H.; Viveiros, Miguel; Vorholt, Julia A.; Weinstock, Christof; Yamato, Masayuki; Zabetakis, Ioannis; Zhao, Xin; Ziegler, Andreas; Aizat, Wan M.; Atlas, Lauren; Bridges, Kristina M.; Chakraborty, Sayan; Deschodt, Mieke; Domingues, Helena S.; Esfahlani, Shabnam S.; Falk, Sebastian; Guisado, J. L.; Kane, Nolan C.; Kueberuwa, Gray; Lau, Colleen L.; Liang, Dai; Liu, Enwu; Luu, Andreas M.; Ma, Chuang; Ma, Lisong; Moyer, Robert; Norris, Adam D.; Panthee, Suresh; Parsons, Jerod R.; Peng, Yousong; Pinto, Ines Mendes; Reschke, Cristina R.; Sillanpaa, Elina; Stewart, Christopher J.; Uhle, Florian; Yang, Hui; Zhou, Kai; Zhu, Shu; Ashry, Mohamed; Bergsland, Niels; Berthold, Maximilian; Chen, Chang-er; Colella, Vito; Cuypers, Maarten; Eskew, Evan A.; Fan, Xiao; Gajda, Maksymilian; Gonzalezlez-prendes, Rayner; Goodin, Amie; Graham, Emily B.; Groen, Ewout J. N.; Gutierrez-sacristan, Alba; Habes, Mohamad; Heffler, Enrico; Higginbottom, Daniel B.; Janzen, Thijs; Jayaraman, Jayakumar; Jibb, Lindsay A.; Jongen, Stefan; Kinyanjui, Timothy; Koleva-kolarova, Rositsa G.; Li, Zhixiu; Liu, Yu-peng; Lund, Bjarte A.; Lussier, Alexandre A.; Ma, Liping; Mier, Pablo; Moore, Matthew D.; Nagler, Katja; Orme, Mark W.; Pearson, James A.; Prajapati, Anilkumar S.; Saito, Yu; Troder, Simon E.; Uchendu, Florence; Verloh, Niklas; Voutchkova, Denitza D.; Abu-zaid, Ahmed; Bakkach, Joaira; Baumert, Philipp; Dono, Marcos; Hanson, Jack; Herbelet, Sandrine; Hobbs, Emma; Kulkarni, Ameya; Kumar, Narendra; Liu, Siqi; Loft, Nikolai D.; Reddan, Tristan; Senghore, Thomas; Vindin, Howard; Xu, Haotian; Bannon, Ross; Chen, Branson; Cheung, Johnny T. K.; Cooper, Jeffrey; Esnakul, Ashwini K.; Feghali, Karine A.; Ghelardi, Emilia; Gnasso, Agostino; Horbar, Jeffrey; Lai, Hei M.; Li, Jian; Ma, Lan; Ma, Ruiyan; Pan, Zihang; Peres, Marco A.; Pranata, Raymond; Seow, Esmond; Sydes, Matthew; Testoni, Ines; Westermair, Anna L.; Yang, Yongliang; Afnan, Masoud; Albiol, Joan; Albuquerque, Lucia G.; Amiya, Eisuke; Amorim, Rogerio M.; An, Qianli; Andersen, Stig U.; Aplin, John D.; Argyropoulos, Christos; Asmann, Yan W.; Assaeed, Abdulaziz M.; Atanasov, Atanas G.; Atchison, David A.; Avery, Simon V.; Avillach, Paul; Baade, Peter D.; Backman, Lars; Badie, Christophe; Baldi, Alfonso; Ball, Elizabeth; Bardot, Olivier; Barnett, Adrian G.; Basner, Mathias; Batra, Jyotsna; Bazanova, O. M.; Beale, Andrew; Beddoe, Travis; Bell, Melanie L.; Berezikov, Eugene; Berners-price, Sue; Bernhardt, Peter; Berry, Edward; Bessa, Theolis B.; Billington, Craig; Birch, John; Blakely, Randy D.; Blaskovich, Mark A. T.; Blum, Robert; Boelaert, Marleen; Bogdanos, Dimitrios; Bosch, Carles; Bourgoin, Thierry; Bouvard, Daniel; Boykin, Laura M.; Bradley, Graeme; Braun, Daniel; Brownlie, Jeremy; Bruhl, Albert; Burt, Austin; Butler, Lisa M.; Byrareddy, Siddappa N.; Byrne, Hugh J.; Cabantous, Stephanie; Calatayud, Sara; Candal, Eva; Carlson, Kimberly; Casillas, Sonia; Castelvetro, Valter; Caswell, Patrick T.; Cavalli, Giacomo; Cerovsky, Vaclav; Chagoyen, Monica; Chen, Chang-shi; Chen, Dong F.; Chen, Hao; Chen, Hui; Chen, Jui-tung; Chen, Yinglong; Cheng, Changxiu; Cheng, Jianlin; Chinapaw, Mai; Chinopoulos, Christos; Cho, William C. S.; Chong, Lillian; Chowdhury, Debashish; Chwalibog, Andre; Ciresi, A.; Cockcroft, Shamshad; Conesa, Ana; Cook, Penny A.; Cooper, David N.; Coqueret, Olivier; Corea, Enoka M.; Costa, Elisio; Coupland, Carol; Crawford, Stephanie Y.; Cruz, Aparecido D.; Cui, Huijuan; Cui, Qiang; Culver, David C.; D'Angiulli, Amedeo; Dahms, Tanya E. S.; Daigle, France; Dalgleish, Raymond; Danielsen, Havard E.; Darras, Sebastien; Davidson, Sean M.; Day, David A.; Degirmenci, Volkan; Demaison, Luc; Devriendt, Koenraad; Ding, Jiandong; Dogan, Yunus; Dong, X. C.; Donner, Claudio F.; Dressick, Walter; Drevon, Christian A.; Duan, Huiling; Ducho, Christian; Dumaz, Nicolas; Dwarakanath, Bilikere S.; Ebell, Mark H.; Eisenhardt, Steffen; Elkum, Naser; Engel, Nadja; Erickson, Timothy B.; Fairhead, Michael; Faville, Marty J.; Fejzo, Marlena S.; Festa, Fernanda; Feteira, Antonio; Flood-page, Patrick; Forsayeth, John; Fox, Simon A.; Franks, Steven J.; Frentiu, Francesca D.; Frilander, Mikko J.; Fu, Xinmiao; Fujita, Satoshi; Galea, Ian; Galluzzi, Luca; Gani, Federica; Ganpule, Arvind P.; Garcia-alix, Antonio; Gedye, Kristene; Giordano, Maurizio; Giunta, Cecilia; Gleeson, Paul A.; Goarant, Cyrille; Gong, Haipeng; Gora, Diop; Gough, Michael J.; Goyal, Ravinder; Graham, Kathryn E.; Grande-perez, Ana; Graves, Patricia M.; Greidanus, Harm; Grice, Darren; Grunau, Christoph; Gumulya, Yosephine; Guo, Yabin; Gurevich, Vsevolod V.; Gusev, Oleg; Hacker, Elke; Hage, Steffen R.; Hagen, Guy; Hahn, Steven; Haller, Dagmar M.; Hammerschmidt, Sven; Han, Jianwei; Han, Renzhi; Handfield, Martin; Hapuarachchi, Hapuarachchige C.; Harder, Timm; Hardingham, Jennifer E.; Heck, Michelle; Heers, Marcel; Hew, Khe F.; Higuchi, Yohei; St Hilaire, Cynthia; Hilton, Rachel; Hodzic, Enisa; Hone, Andrew; Hongoh, Yuichi; Hu, Guoku; Huber, Heinz P.; Hueso, Luis E.; Huirne, Judith; Hurt, Lisa; Idborg, Helena; Ikeo, Kazuho; Ingley, Evan; Jakeman, Philip M.; Jensen, Arne; Jia, Hong; Jia, Husen; Jia, Shuqin; Jiang, Jianping; Jiang, Xingyu; Jin, Yi; Jo, Daehyun; Johnson, Andrew M.; Johnston, Marie; Jonscher, Karen R.; Jorens, Philippe G.; Jorgensen, Jens O. L.; Joubert, Johan W.; Jung, Sin-ho; Junior, Antonio M.; Kahan, Thomas; Kamboj, Sunjeev K.; Kang, Yong-kook; Karamanos, Yannis; Karp, Natasha A.; Kelly, Ryan; Kenna, Ralph; Kennedy, Jonathan; Kersten, Birgit; Khalaf, Roy A.; Khalid, Javaria M.; Khatlani, T.; Khider, Tarig; Kijanka, Gregor S.; King, Sarah R. B.; Kluz, Tomasz; Knox, Paul; Kobayashi, Tatsuya; Koch, Karl-wilhelm; Kohonen-corish, Maija R. J.; Kong, Xiangpeng; Konkle-parker, Deborah; Korpela, Kalevi M.; Kostrikis, Leondios G.; Kraiczy, Peter; Kratz, Harald; Krause, Gunter; Krebsbach, Paul H.; Kristensen, Soren R.; Kumari, Prerna; Kunimatsu, Akira; Kurdak, Hatice; Kwon, Young D.; Lachat, Carl; Lagisz, Malgorzata; Laky, Brenda; Lammerding, Jan; Lange, Matthias; Larrosa, Mar; Laslett, Andrew L.; Leclair, Elizabeth E.; Lee, Kyung-woo; Lee, Ming-yih; Lee, Moon-soo; Li, Genyuan; Li, Jiansheng; Lieb, Klaus; Lim, Yau Y.; Lindsey, Merry L.; Line, Paul-dag; Liu, Dengcai; Liu, Fengbin; Liu, Haiyan; Liu, Hongde; Lloyd, Vett K.; Lo, Te-wen; Locci, Emanuela; Loidl, Josef; Lorenzen, Johan; Lorkowski, Stefan; Lovell, Nigel H.; Lu, Hua; Lu, Wei; Lu, Zhiyong; Luengo, Gustavo S.; Lundh, Lars-gunnar; Lysy, Philippe A.; Mabb, Angela; Mack, Heather G.; Mackey, David A.; Mahdavi, S. R.; Maher, Pamela; Maher, Toby; Maity, Sankar N.; Malgrange, Brigitte; Mamoulakis, Charalampos; Mangoni, Arduino A.; Manke, Thomas; Manstead, Antony S. R.; Mantalaris, Athanasios; Marsal, Jan; Marschall, Hanns-ulrich; Martin, Francis L.; Martinez-raga, Jose; Martinez-salas, Encarnacion; Mathieu, Daniel; Matsui, Yoichi; Maza, Elie; Mccutcheon, James E.; Mckay, Gareth J.; Mcmillan, Brian; Mcmillan, Nigel; Meads, Catherine; Medina, Loreta; Merrick, B. Alex; Metzger, Dennis W.; Meunier, Frederic A.; Michaelis, Martin; Micheau, Olivier; Mihara, Hisaaki; Mintz, Eric M.; Mizukami, Takuo; Moalic, Yann; Mohapatra, D. P.; Monteiro, Antonia; Montes, Matthieu; Moran, John V.; Morozov, Sergey Y.; Mort, Matthew; Murai, Noriyuki; Murphy, Denis J.; Murphy, Susan K.; Murray, Shauna A.; Naganawa, Shinji; Nammi, Srinivas; Nasios, Grigorios; Natoli, Roman M.; Nguyen, Frederique; Nicol, Christine; Van Nieuwerburgh, Filip; Nilsen, Erlend B.; Nobile, Clarissa J.; O'Mahony, Margaret; Ohlsson, Sophie; Olatunbosun, Oluremi; Olofsson, Per; Ortiz, Alberto; Ostrikov, Kostya; Otto, Siegmar; Outeiro, Tiago F.; Ouyang, Songying; Paganoni, Sabrina; Page, Andrew; Palm, Christoph; Paradies, Yin; Parsons, Michael H.; Parsons, Nick; Pascal, Pigny; Paul, Elisabeth; Peckham, Michelle; Pedemonte, Nicoletta; Pellizzon, Michael A.; Petrelli, M.; Pichugin, Alexander; Pinto, Carlos J. C.; Plevris, John N.; Pollesello, Piero; Polz, Martin; Ponti, Giovanna; Porcelli, Piero; Prince, Martin; Quinn, Gwendolyn P.; Quinn, Terence J.; Ramula, Satu; Rappsilber, Juri; Rehfeldt, Florian; Reiling, Jan H.; Remacle, Claire; Rezaei, Mohsen; Riddick, Eric W.; Ritter, Uwe; Roach, Neil W.; Roberts, David D.; Robles, Guillermo; Rodrigues, Tiago; Rodriguez, Cesar; Roislien, Jo; Roobol, Monique J.; Rowe, J. Alexandra; Ruepp, Andreas; Van Ruitenbeek, Jan; Rust, Petra; Saad, Sonia; Sack, George H.; Santos, Manuela; Saudemont, Aurore; Sava, Gianni; Schrading, Simone; Schramm, Alexander; Schreiber, Martin; Schuler, Sidney; Schymkowitz, Joost; Sczyrba, Alexander; Seib, Kate L.; Shi, Han-ping; Shimada, Tomohiro; Shin, Jeon-soo; Shortt, Colette; Silveyra, Patricia; Skinner, Debra; Small, Ian; Smeets, Paul A. M.; So, Po-wah; Solano, Francisco; Sonenshine, Daniel E.; Song, Jiangning; Southall, Tony; Speakman, John R.; Srinivasan, Mandyam V.; Stabile, Laura P.; Stasiak, Andrzej; Steadman, Kathryn J.; Stein, Nils; Stephens, Andrew W.; Stewart, Douglas I.; Stine, Keith; Storlazzi, Curt; Stoynova, Nataliya V.; Strzalka, Wojciech; Suarez, Oscar M.; Sultana, Taranum; Sumant, Anirudha V.; Summers, Mathew J.; Sun, Gang; Tacon, Paul; Tanaka, Kozo; Tang, Haixu; Tanino, Yoshinori; Targett-adams, Paul; Tayebi, Mourad; Tayyem, Reema; Tebbe, Christoph C.; Telfer, Evelyn E.; Tempel, Wolfram; Teodorczyk-injeyan, Julita A.; Thijs, Gert; Thorne, Sally; Thrift, Amanda G.; Tiffon, Celine; Tinnefeld, Philip; Tjahjono, Daryono H.; Tolle, Fabrice; Toth, Ervin; Del Tredici, Andria L.; Tsapas, Apostolos; Tsirigotis, Konstantinos; Turak, Ayse; Tzotzos, George; Udo, Edet E.; Utsumi, Toshiaki; Vaidyanathan, Subramanian; Vaillant, Michel; Valsesia, Armand; Vandenbroucke, Roosmarijn E.; Veiga, Feliciano H.; Vendrell, Marc; Vesk, Peter A.; Vickers, Paul; Victor, Victor M.; Villemur, Richard; Vohl, Marie-claude; Voolstra, Christian R.; Vuillemin, Anne; Wakelin, Steven; Waldron, Levi; Walsh, Laurence J.; Wang, Amanda Y.; Wang, Fuan; Wang, Yun; Watanabe, Yoichi; Weigert, Andreas; Wen, Jet-chau; Wham, Carol; White, Ethan P.; Wiener, Jan; Wilharm, Gottfried; Wilkinson, Simon; Willmann, Raffaella; Wilson, Coralie; Wirth, Brunhilde; Wojan, Timothy R.; Wolff, Mathieu; Wong, Bryan M.; Wu, Tzu-wei; Wuerbel, Hanno; Xiao, Xiangshu; Xu, Dong; Xu, J. W.; Xu, Jianping; Xue, Bin; Yalcin, Suayib; Yan, Hong; Yang, En-cheng; Yang, Shiqi; Yang, Wei; Ye, Yuzhen; Ye, Zhi-qiang; Yli-kauhaluoma, Jari; Yoneyama, Hiroshi; Yu, Ying; Yuan, Guo-cheng; Yuh, Chiou-hwa; Zaccolo, Manuela; Zeng, Chen; Zevnik, Branko; Zhang, Chi; Zhang, Li; Zhang, Li; Zhang, Yingkai; Zhang, Yusen; Zhang, Zhiyong; Zhang, Zhong-yin; Zhao, Yuan; Zhou, Min; Zuberbier, Torsten; Aanei, Carmen M.; Ahmad, Rafi; Al-lawama, Manar; Alanio, Alexandre; Allardyce, Judith; Alonso-caneiro, David; Atack, John M.; Baier, Dirk; Bansal, Abhisheka; Benezeth, Yannick; Berbesque, Colette; Berrevoet, Frederik; Biedermann, Peter H. W.; Bijleveld, Erik; Bittner, Florian; Blombach, Fabian; Van Den Bos, Wouter; Boudreau, Shellie A.; Bramoweth, Adam D.; Braubach, Oliver; Cai, Yufeng; Campbell, Matthew; Cao, Zanxia; Catry, Thibault; Chen, Xin; Cheng, Shuiqin; Chung, Hee-jung; Chavez-fumagalli, Miguel A.; Conway, Aaron; Costa, Bruno M.; Cyr, Normand; Dean, Lorraine T.; Denzel, Martin S.; Dlamini, S. V.; Dudley, Kevin J.; Dufies, Maeva; Ecke, Thorsten; Eckweiler, Denitsa; Eixarch, Elisenda; El-adawy, Hosny; Emmrich, Julius V.; Eustace, Alex J.; Falter-wagner, Christine M.; Fuss, Johannes; Gao, Jianzhao; Gill, Martin R.; Gloyn, Liz; Goggs, Robert; Govinden, Usha; Greene, Garrett; Greiff, Victor; Grundle, D. S.; Gruneberg, Patrick; Gumede, Nicksy; Haore, Gbaguidi; Harrison, Pille; Hoenner, Xavier; Hojsgaard, Diego; Hori, Hikaru; Ikonomopoulou, Maria P.; Jeurissen, Patrick; Johnson, Daniel M.; Kabra, Dhiraj; Kamagata, Koji; Karmakar, Chandan; Kasian, Olga; Kaye, Linda K.; Khan, Murad M.; Kim, Yong-min; Kish, J. K.; Kobold, Sebastian; Kohanbash, Gary; Kohls, Gregor; Kugler, Jan-michael; Kumar, Gyanendra; Lacy-colson, Jon; Latif, Asam; Lauschke, Volker M.; Li, Bingling; Lim, Chinten J.; Liu, Fang; Liu, Xiaodong; Lu, Jin-jian; Lu, Qiang; Mahavadi, Poornima; Marzocchi, Ugo; Mcgarrigle, Christine A.; Van Meerten, Tom; Min, Rogier; Moal, Iain; Molari, Massimiliano; Molleman, Lucas; Mondal, Saiful R.; Van De Mortel, Thea; Moss, W. 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| Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles.... |
| Tipo: Text |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00659/77117/78538.pdf |
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| Segura, Audrey; Auffret, Pauline; Bibbal, Delphine; Bertoni, Marine; Durand, Alexandra; Jubelin, Gregory; Kerouredan, Monique; Brugere, Hubert; Bertin, Yolande; Forano, Evelyne. |
| Healthy cattle are the primary reservoir for O157:H7 Shiga toxin-producing E coil responsible for human food-borne infections. Because farm environment acts as a source of cattle contamination, it is important to better understand the factors controlling the persistence of E. coil O157:H7 outside the bovine gut. The E. coil O157:H7 strain MC2, identified as a persistent strain in French farms, possessed the characteristics required to cause human infections and genetic markers associated with clinical O157:H7 isolates. Therefore, the capacity of E. coil MC2 to survive during its transit through the bovine gastro-intestinal tract (GIT) and to respond to stresses potentially encountered in extra intestinal environments was analyzed. E. coil MC2 survived in... |
| Tipo: Text |
Palavras-chave: Escherichia coli; STEC; EHEC; O157:H7; Biofilms; Stress response; Persistence. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00434/54588/55972.pdf |
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