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DNA hybridization mechanism in an interfacial environment: What hides beneath first order k (s(-1)) kinetic constant? ArchiMer
Lazerges, M.; Perrot, H.; Rabehagasoa, N.; Compere, Chantal; Dreanno, Catherine; Mucio Pedroso, M.; Faria, R. C.; Bueno, P. R..
The scientific question addressed in this work is: what hides beneath first order kinetic constant k (s(-1)) measured for hybridization of a DNA target on a biosensor surface. Kinetics hybridization curves were established with a 27 MHz quartz microbalance (9 MHz, third harmonic) biosensor, constituted of a 20-base probe monolayer deposited on a gold covered quartz surface. Kinetics analysis, by a known two-step adsorption-hybridization mechanism, is well appropriate to fit properly hybridization kinetics curves, for complementary 20-base to 40-base targets over two concentration decades. It was found that the K-1 (M-1) adsorption constant, relevant to the first step, concerns an equilibrium between non hybridized targets and hybridized pre-complex and...
Tipo: Text Palavras-chave: Biosensors; DNA; Hybridization kinetics; Quartz crystal microbalance.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00101/21195/19415.pdf
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Strategy to design DNA-biosensors: Single-stranded probe grafting versus target-probe duplex grafting ArchiMer
Vedrine, C.; Lazerges, M.; Perrot, H.; Compere, Chantal; Pernelle, C..
A strategy to design DNA-biosensors by grafting probe-target duplex onto a 27 MHz quartz crystal microbalance gold surface is presented in this work. The idea that removing the DNA target after duplex grafting yields to a well accessible probe, and therefore to efficient target recognition, is investigated. Unfortunately, hybridization efficiency measured using such a straightaway protocol is equal to 15%, which is feeble by comparison with the 31% hybridization efficiency measured for biosensors designed with single-stranded probe. Successive DNA biosensors are designed in this work, taking into account phenomena that occur specifically in an interfacial environment, like non specific adsorption or exchange reactions between adsorbed molecules. A...
Tipo: Text Palavras-chave: Alexandrium minutum; Biosensor; Double-stranded DNA; Quartz crystal microbalance.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00101/21196/19416.pdf
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A Biosensor for Detection of DNA Sequences Based on a 50MHz QCM electronic oscillator circuit ArchiMer
Bustabad, E. A.; Garcia, G; Rodriguez-pardo, L.; Farina, J.; Perrot, H.; Gabrielli, C.; Bucur, B.; Lazerges, M.; Rose, D.; Compere, Chantal; Arnau, A..
This work deals with the development of a high sensibility DNA biosensor based on a 50MHz Quartz Crystal Microbalance (QCM) Oscillator Electronic Circuit. The designed QCM oscillator sensor is able to detect the presence of complementary DNAs in a solution that match the sequence on a given strand in function of the changes in the output frequency of the oscillator. The design is adapted so that the Barkhausen condition is satisfied even when the quartz is immerged in liquid media. Also a comparative study of the developed 50MHz biosensor in front of a QCM oscillator with smaller frequency is carried out, with object of checking if the sensibility of the oscillator increases, allowing to detect smaller concentrations of the complementary DNA.
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Ano: 2009 URL: http://archimer.ifremer.fr/doc/00021/13198/10574.pdf
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Layer-by-Layer DNA film synthesis via branched hybridization ArchiMer
Lazerges, M.; Perrot, H.; Antoine, Elisabeth; Compere, Chantal.
A new Layer-by-Layer (LbL) DNA film synthesis, where the driving force is the natural DNA hybridization, is presented in this work. The DNA films were synthesized via a branched mechanism and do not include any chemical binders between each layer as it is the case for film obtained by other synthesis paths. Kinetics of film formation were monitored by mass measurements with an electroacoustic network analyzer. The presented synthesis is a pathway to new DNA structures which can be used in biotechnologies and is complementary to those obtained by other LbL techniques.
Tipo: Text Palavras-chave: LbL; Electroacoustic; DNA film; Multicouche; Film ADN; Électroacoustique.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-6217.pdf
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