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Registros recuperados: 97
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Microbial impact of small tributaries on water and shellfish quality in shallow coastal areas ArchiMer
Riou, Philippe; Le Saux, Jean-claude; Dumas, Franck; Caprais, Marie-paule; Le Guyader, Soizick; Pommepuy, Monique.
This study aimed to investigate the impact of small tributaries on seawater and shellfish quality in coastal area subjected to brief episodes leading to fecal contamination. Escherichia coli and F-RNA-specific bacteriophages were selected as fecal indicators and astroviruses were chosen as being representative of pathogens in the human population during winter viral epidemics. A two-dimensional hydrodynamic model was built to simulate the current and dispersion in the model domain, which includes areas uncovered at low tide. The model also includes decay rates to simulate microorganism behavior and assess the influence of fecal input on shellfish quality. The originality lies in the fact that specific features of the study area were considered. Modeling...
Tipo: Text Palavras-chave: Shellfish; Astrovirus; F RNA specific; E. coli; Seawater fecal contamination; Modeling.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-2675.pdf
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Impact of Xynthia Tempest on Viral Contamination of Shellfish ArchiMer
Grodzki, Marco; Ollivier, Joanna; Le Saux, Jean-claude; Piquet, Jean-come; Noyer, Mathilde; Le Guyader, Soizick.
Viral contamination in oyster and mussel samples was evaluated after a massive storm with hurricane wind named "Xynthia tempest" destroyed a number of sewage treatment plants in an area harboring many shellfish farms. Although up to 90% of samples were found to be contaminated 2 days after the disaster, detected viral concentrations were low. A 1-month follow-up showed a rapid decrease in the number of positive samples, even for norovirus.
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Ano: 2012 URL: http://archimer.ifremer.fr/doc/00079/18992/17216.pdf
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Foodborne viruses: Detection, risk assessment, and control options in food processing ArchiMer
Bosch, Albert; Gkogka, Elissavet; Le Guyader, Soizick; Loisy-hamon, Fabienne; Lee, Alvin; Van Lieshout, Lilou; Marthi, Balkumar; Myrmel, Mette; Sansom, Annette; Schultz, Anna Charlotte; Winkler, Anett; Zuber, Sophie; Phister, Trevor.
In a recent report by risk assessment experts on the identification of food safety priorities using the Delphi technique, foodborne viruses were recognized among the top rated food safety priorities and have become a greater concern to the food industry over the past few years. Food safety experts agreed that control measures for viruses throughout the food chain are required. However, much still needs to be understood with regard to the effectiveness of these controls and how to properly validate their performance, whether it is personal hygiene of food handlers or the effects of processing of at risk foods or the interpretation and action required on positive virus test result. This manuscript provides a description of foodborne viruses and their...
Tipo: Text Palavras-chave: Virus; Detection; Risk assessment; Food; Processing technologies.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00443/55507/57057.pdf
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Improving the efficacy of sewage treatment decreases norovirus contamination in oysters ArchiMer
Schaeffer, Julien; Treguier, Cathy; Piquet, Jean-come; Gachelin, Sonia; Cochennec-laureau, Nathalie; Le Saux, Jean-claude; Garry, Pascal; Le Guyader, Soizick.
As human population increases worldwide, water quality will become increasingly problematic, and food consumed raw may be of higher risk. This is already evident for oysters grown in coastal areas - despite regulations based on bacterial indicators, oysters are still implicated in food-borne outbreaks worldwide. The pathogens most frequently detected are human noroviruses, which are shed at high concentrations in human excreta and are very resistant to environmental conditions. Sewage treatment plants usually apply a variety of steps such as activated sludge treatment, chlorine or UV disinfection to eliminate contaminants, these processes have variable efficacy. This study demonstrates the impact of replacing an old lagoon-based sewage treatment plant with...
Tipo: Text Palavras-chave: Norovirus; Shellfish safety; Sewage treatment; Coastal water quality.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00450/56140/57707.pdf
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Validity of Escherichia coli, enterovirus, and F-specific RNA bacteriophages as indicators of viral shellfish contamination ArchiMer
Miossec, Laurence; Le Guyader, Soizick; Pelletier, Dominique; Haugarreau, Larissa; Caprais, Marie-paule; Pommepuy, Monique.
The sanitary classification of harvesting areas for bivalve mollusks in France is based on the level of Escherichia Coli contamination detected in shellfish meat, as defined in EC Directive 91/492 EEC. However, outbreaks of gastroenteritis or hepatitis after consumption of shellfish meeting current bacteriological standards suggest that E. coli is a poor indicator of viral contamination. The purpose of this study was to assess the adequacy of enterovirus and F-specific RNA bacteriophages as new indicators of human enteric viruses. Shellfish were sampled over a 37-mo period to characterize microbial contamination in two coastal areas subjected to different sewage contamination inputs. Contamination by E. coli, F-specific RNA bacteriophages (F+ RNA) and...
Tipo: Text Palavras-chave: Indicator; Escherichia coli; F specific RNA bacteriophages; Enteric viruses; Viral contamination; Shellfish.
Ano: 2001 URL: https://archimer.ifremer.fr/doc/00000/10006/7794.pdf
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Huîtres et norovirus : une affinité particulière? ArchiMer
Le Guyader, Soizick; Maalouf, Haifa; Le Pendu, Jacques.
Shellfish can be a vector for human pathogens. Despite regulation based on enteric bacteria, shellfish are still implicated in viral outbreaks. Oysters are the most common shellfish associated with outbreaks, and noroviruses, which cause acute gastroenteritis, are the most frequently identified pathogen in these outbreaks. Analysis of shellfish-related outbreak data worldwide shows an unexpected high proportion of genogroup I strains. Recent studies performed in vitro, in vivo and in the environment indicate that oysters are not just a passive filter, but can selectively accumulate norovirus strains based on virus carbohydrate ligands shared with humans. These observations may help explain the GI/GII bias observed in shellfish-related outbreaks compared to...
Tipo: Text Palavras-chave: Huîtres; Norovirus; Ligand; Sélection de souches; Oysters; Norovirus; Ligand; Strain selection.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00152/26357/24514.pdf
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Virus entériques humains et coquillages ArchiMer
Parnaudeau, Sylvain; Le Mennec, Cecile; Miura, Takayuki; Le Saux, Jean-claude; Le Guyader, Soizick.
Human enteric viruses discharged in raw sewage are hightly resistant and may be detected in surface waters, coastal areas and shellfish. Whereas noroviruses, responsible for relatively benign acute gastroentritis, are the most common agents implicated in shellfish borne outbreaks, other human viruses which cause severe human diseases, such as hepatitis A virus, may also be transmitted. Environmental studies have demonstrated that virus concentrations detected in shellfish are higher than in surrounding waters. This concentration may explain the high prevalence of noroviruses detected in various shellfish species collected in different countries. If many questions remain regarding viral contamination of shellfish, the most important seems to be the...
Tipo: Text Palavras-chave: Shellfish; Human enteric viruses; Norovirus; Hepatitis A virus; Coquillage; Virus entérique humain; Norovirus; Virus de l'hépatite A.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00317/42849/42258.pdf
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Molecular epidemiology of caliciviruses detected in sporadic and outbreak cases of gastroenteritis in France from December 1998 to February 2004 ArchiMer
Bon, Fabienne; Ambert Balay, K; Giraudon, H; Kaplon, J; Le Guyader, Soizick; Pommepuy, Monique; Gallay, A; Vaillant, V; De Valk, H; Chikhi Brachet, R; Flahaut, A; Pothier, P; Kohli, E.
We compiled sequence and epidemiological data from 172 caliciviruses detected in France from December 1998 to February 2004 in sporadic and outbreak cases. The results showed a cocirculation of strains with a majority of genogroup II (GII) noroviruses. Three groups of noroviruses, not detected before in our laboratory, emerged and spread during the period: the recombinant GGIIb and Norwalk-related strains not amplified in the polymerase gene in 2000 and a new Lordsdale variant in 2002. We observed that (I) GII4 noroviruses were predominant in nursing home and hospital outbreaks but rare in oyster- and water-related outbreaks despite continuous circulation in the population; (ii) at the opposite, genogroup I strains were detected in the majority of...
Tipo: Text Palavras-chave: Genogroup; Cocirculation; Gastroenteritis; Caliciviruses; Epidemiological.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-723.pdf
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Detecting virus contamination in shellfish ArchiMer
Bosch, Albert; Lees, D.; Von Bonsdorff, C.h.; Pinto, R.m.; Crocci, L.; De Medici, D.; Le Guyader, Soizick.
Tipo: Text
Ano: 2008 URL: http://archimer.ifremer.fr/doc/00066/17767/15283.pdf
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Rapport d’activités 2015. Laboratoire Santé Environnement et Microbiologie. Laboratoire National de Référence de Microbiologie des coquillages ArchiMer
Garry, Pascal; Le Saux, Jean-claude; Hervio Heath, Dominique; Le Guyader, Soizick.
La Microbiologie sanitaire, thème de recherche fédérant notre laboratoire, nous a permis d’obtenir des résultats intéressants qui sont présentés dans ce rapport et ont été valorisés par des publications ou la participation des membres de l’équipe à des congrès scientifiques. Cette thématique nous permet surtout des collaborations variées au travers des projets de recherche portés par l’équipe. L’élargissement de nos activités en intégrant la coordination REMI constitue un point important à souligner complétant nos actions de référence, d’expertise et de recherche. L’attrait et l’intérêt scientifique suscité par la microbiologie sanitaire a été démontré par le succès rencontré par le colloque organisé à Brest en lien avec la fin du projet européen...
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Ano: 2016 URL: http://archimer.ifremer.fr/doc/00380/49138/49574.pdf
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Optimization of PMAxx pretreatment to distinguish between human norovirus with intact and altered capsids in shellfish and sewage samples ArchiMer
Randazzo, Walter; Khezri, Mohammad; Ollivier, Joanna; Le Guyader, Soizick; Rodriguez-diaz, Jesus; Aznar, Rosa; Sanchez, Gloria.
Shellfish contamination by human noroviruses (HuNoVs) is a serious health and economic problem. Recently an ISO procedure based on RT-qPCR for the quantitative detection of HuNoVs in shellfish has been issued, but these procedures cannot discriminate between inactivated and potentially infectious viruses. The aim of the present study was to optimize a pretreatment using PMAxx to better discriminate between intact and heat-treated HuNoVs in shellfish and sewage. To this end, the optimal conditions (30 min incubation with 100 μM of PMAxx and 0.5% of Triton, and double photoactivation) were applied to mussels, oysters and cockles artificially inoculated with thermally-inactivated (99 °C for 5 min) HuNoV GI and GII. This pretreatment reduced the signal of...
Tipo: Text Palavras-chave: Intercalating dyes; Viability PCR; Norovirus; Shellfish; Sewage; RT-qPCR.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00411/52208/52970.pdf
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Comprehensive Analysis of a Norovirus-Associated Gastroenteritis Outbreak, from the Environment to the Consumer ArchiMer
Le Guyader, Soizick; Krol, Joanna; Ambert-balay, Katia; Ruvoen-clouet, Nathalie; Desaubliaux, Benedicte; Parnaudeau, Sylvain; Le Saux, Jean-claude; Ponge, Agnes; Pothier, Pierre; Atmar, Robert L.; Le Pendu, Jacques.
Noroviruses have been recognized to be the predominant agents of nonbacterial gastroenteritis outbreaks in humans, and their transmission via contaminated shellfish consumption has been demonstrated. Norovirus laboratory experiments, volunteer challenge studies, and community gastroenteritis outbreak investigations have identified human genetic susceptibility factors related to histo-blood group antigen expression. Following a banquet in Brittany, France, in February 2008, gastroenteritis cases were linked to oyster consumption. This study identified an association of the norovirus illnesses with histo-blood group expression, and oyster contamination with norovirus was confirmed by qualitative and quantitative analyses. The secretor phenotype was...
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00002/11309/8050.pdf
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Détection des virus entériques dans les stations d'épuration par PCR ArchiMer
Le Guyader, Soizick; Dubois, Eric; Menard, Dominique.
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Ano: 1994 URL: http://archimer.ifremer.fr/doc/00041/15209/12537.pdf
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A scientific review of binding and inactivation of viruses on and in food, with a focus on the role of the matrix ArchiMer
Le Guyader, Soizick; Atmar, Robert.
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Ano: 2008 URL: http://archimer.ifremer.fr/doc/00066/17762/15276.pdf
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Norovirus et huîtres : de la terre à la mer ! ArchiMer
Thomas, Adeline; Le Saux, Jean-claude; Ollivier, Joanna; Maalouf, Haifa; Pommepuy, Monique; Le Guyader, Soizick.
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00060/17118/14630.pdf
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Evidence of the presence of viral shellfish contamination in shellfish after short rainfall events ArchiMer
Le Saux, Jean-claude; Serais, Ophelie; Krol, Joanna; Parnaudeau, Sylvain; Salvagnac, P.; Delmas, G.; Cicchelero, V.; Claudet, J.; Pothier, P.; Balay, K.; Fiandrino, Annie; Pommepuy, Monique; Le Guyader, Soizick.
Infectious diseases linked to the consumption of raw shellfish have long been identified. Over the past century, various strategies have been set up in shellfish growing areas throughout the world to guarantee the sanitary quality of shellfish and to protect consumers. However despite sanitary improvements, human enteric viruses - especially Hepatitis A virus and norovirus– have been found to be associated with shellfish outbreaks. A recent example demonstrated the impact of storm events. Following heavy rain and sewage overflow, shellfish beds were contaminated and the shellfish from them were marketed after depuration. However, since viruses persist longer than fecal contamination indicator bacteria, several clusters of gastroenteritis cases were...
Tipo: Text Palavras-chave: Virus; Shellfish; Contamination events.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00066/17736/15257.pdf
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Contamination des coquillages par les norovirus en rivière d'Auray en lien avec la rénovation d'une station d'épuration littorale ArchiMer
Treguier, Cathy; Schaeffer, Julien; Le Saux, Jean-claude; Le Guyader, Soizick; Cochennec-laureau, Nathalie.
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Ano: 2015 URL: http://archimer.ifremer.fr/doc/00312/42358/41693.pdf
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VirOdyssée, la course du norovirus de la terre à la mer ArchiMer
Euller, Gabriel; Desdouits, Marion; Pilven, Sophie; Preux, Guillemette; Le Guyader, Soizick; Garry, Pascal.
Ce jeu de l’oie sous forme de poster a été réalisé dans le cadre de la fête de la science 2020, au muséum d’histoire naturelle de Nantes, afin de présenter au grand public, le mode de dissémination d’un norovirus depuis son excrétion jusqu’à la contamination des coquillages et l’impact de l’homme et de l’environnement sur le devenir de ce virus.
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Ano: 2020 URL: https://archimer.ifremer.fr/doc/00675/78757/80929.pdf
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Assessment of human enteric viruses in cultured and wild bivalve molluscs ArchiMer
Luz Vilarino, M.; Le Guyader, Soizick; Polo, David; Schaeffer, Julien; Krol, Joanna; Romalde, Jesus L..
Standard and real-time reverse transcription-PCR (rRT-PCR) procedures were used to monitor cultured and wild bivalve molluscs from the Ria de Vigo (NW Spain) for the main human enteric RNA viruses, specifically, norovirus (NoV), hepatitis A virus (HAV), astrovirus (AsV), rotavirus (RT), enterovirus (EV), and Aichi virus (AiV). The results showed the presence of at least one enteric virus in 63.4% of the 41 samples analyzed. NoV GII was the most prevalent virus, detected in 53.7% of the samples, while NoV GI, AsV, EV, and RV were found at lower percentages (7.3, 12.2, 12.2, and 4.9%, respectively). In general, samples obtained in the wild were more frequently contaminated than those from Cultured (70.6 vs. 58.3%) molluscs and were more readily contaminated...
Tipo: Text Palavras-chave: Seafood industry; Viral quantification; Viral prevalence; Norovirus; Hepatitis A virus; Enteric viruses; Molluscs.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6957.pdf
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Rapport d’activités 2019. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages ArchiMer
Garry, Pascal; Le Guyader, Soizick.
Ce rapport présente une synthèse des actions, et travaux réalisés par le laboratoire Santé Environnement et Microbiologie pendant l’année 2019. Les divers projets de recherche sont résumés et les derniers développements ou résultats sont brièvement évoqués. Les actions en tant que Laboratoire National de Référence pour la Microbiologie des Coquillages et les activités pour la coordination du réseau REMI sont également présentées.
Tipo: Text Palavras-chave: Microbiologie sanitaire; Bactéries entériques; Vibrions; Virus entériques humains; Norovirus; Coquillage. Activité de référence; REMI.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00615/72671/71688.pdf
Registros recuperados: 97
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