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	Provedor de dados Nature Precedings (3) Autor Falko Krause (3) Marvin Schulz (3) Timo Lubitz (2) Wolfram Liebermeister (2) Allyson L. Lister (1) Camille Laibe (1) Catherine Lloyd (1) Christian Knuepfer (1) Dagmar Waltemath (1) Edda Klipp (1) Frank Bergmann (1) Goksel Misirli (1) Michael Hucka (1) Morgan Taschuk (1) Neil Swainston (1) Nick Juty (1) Nicolas Le Novère (1) Ron Henkel (1) Sarah Keating (1) Stefan Hoops (1) Mais... Palavra-chave Bioinformatics (3) Data Standards (2) Tipo do documento Manuscript (1) Poster (1) Presentation (1) Ano 2011 (1) 2010 (2) País United Kingdom (3)		Ordenar por:  Relevância Autor Título Ano Registros recuperados: 3 Primeira ... 1 ... Última semanticSBML 2.0 - A Collection of Online Services for SBML Models Nature Precedings Falko Krause; Timo Lubitz; Marvin Schulz; Edda Klipp. semanticSBML 2.0 is a collection of online services for the processing of biochemical networks in the SBML (Systems Biology Markup Language) document format. It allows users to edit SBO (Systems Biology Ontology) and RDF based MIRIAM (Minimum Information Required in the Annotation of Models) annotations, check for semantic validity, compare and merge SBML documents, and to create submodels. Given an annotated SBML document similar SBML documents can be retrieved from the BioModels Database via a ranked similarity search. Further features of semanticSBML 2.0 include graph visualization of SBML documents, parameter balancing, creation of SBML documents using shorthand SBML, and an interface to the BioModels Database that allows the comparison of document... Tipo: Poster Palavras-chave: Bioinformatics; Data Standards. Ano: 2010 URL: http://precedings.nature.com/documents/5402/version/1 SBML Level 3 Package Proposal: Annotation Nature Precedings Dagmar Waltemath; Neil Swainston; Allyson L. Lister; Frank Bergmann; Ron Henkel; Stefan Hoops; Michael Hucka; Nick Juty; Sarah Keating; Christian Knuepfer; Falko Krause; Camille Laibe; Wolfram Liebermeister; Catherine Lloyd; Goksel Misirli; Marvin Schulz; Morgan Taschuk; Nicolas Le Novère. The annotation of Systems Biology Markup Language (SBML) models with semantic terms has been supported for a number of years. The prevalence of such annotated models is growing, with repositories such as Biomodels.net and an increasing number of software tools supporting and encouraging their use and development.

With the increasing use of semantic annotations in the context of systems biology modeling has come the realization that the current Core SBML specification defining their use contains limitations that reduce the scope of metadata that can be captured in such models.

SBML Level 3 provides the facility to propose and develop optional extensions to the Core specification. One such... Tipo: Manuscript Palavras-chave: Bioinformatics; Data Standards. Ano: 2011 URL: http://precedings.nature.com/documents/5610/version/1 SemanticSBML – state of affairs Nature Precedings Wolfram Liebermeister; Falko Krause; Marvin Schulz; Timo Lubitz. A number of new functions in the software tool semanticSBML make extensive use of MIRIAM-compliant annotations in SBML models. Semantic model search allows to obtain, from BioModels Database, a ranked list of models resembling a given query model or data set. Model clustering allows for exploring and visualising similarities among large numbers of SBML models. Parameter balancing uses collected kinetic constants - retrieved by using semantic annotations - to infer consistent sets of model parameters. Tipo: Presentation Palavras-chave: Bioinformatics. Ano: 2010 URL: http://precedings.nature.com/documents/4987/version/1 Registros recuperados: 3 Primeira ... 1 ... Última

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