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Otolith age estimation by Mojette Transform descriptors and machine learning ArchiMer
Poisson Caillault, Emilie; Vanhelst, Florentin; Charlet, Bastian; Mahe, Kelig.
Age and growth are primordial essential data in stock assessment and management. However, contracting experts for age estimation using calcified pieces costs several million euros annually. Yet, alternative methods exist for fish ageing using the otolith shape (i.e., otolith shape descriptors or Elliptic Fourier Analysis). The goal of this study is to use a new descriptor of the otolith shape with Mojette Transform as an input of k-Nearest Neighbors (k-NN), Random Forest (RF) and Multi-Layer Perceptron (MLP) classifiers. Mojette Transform is the exact discrete Radon transform used in tomographic reconstruction, image watermarking, or video compression. Its mathematical properties allow reducing the information and having enough redundancy to characterize...
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00436/54723/56158.pdf
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Towards Chl-a Bloom Understanding by EM-based Unsupervised Event Detection ArchiMer
Poisson Caillault, Emilie; Lefebvre, Alain.
Marine water quality monitoring and subsequent management require to know when a specific event like harmful algae bloom may occur and which environmental conditions and pressures lead to this event. So, event detection and its dynamic understanding are crucial to adapt strategy. An algorithm is proposed to identify curves mixture and their dynamics features - initiation, duration, peaks and ends of the event. The approach is fully unsupervised, it requires no tuning parameters and is based on Expectation Maximization process to estimate the most robust mixture according to fixed criteria. A complete framework is proposed to deal with a univariate time series with missing data. The approach is applied on Chlorophyll- a series collected weekly since 1989....
Tipo: Text Palavras-chave: Time series; Event detection; Expectation-Maximisation; Phenology; Chlorophyll-a; Phaeocystis.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00435/54679/56097.pdf
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DTW-Approach for uncorrelated multivariate time series imputation ArchiMer
Phan, Thi-thu-hong; Poisson Caillault, Emilie; Bigand, Andre; Lefebvre, Alain.
Missing data are inevitable in almost domains of applied sciences. Data analysis with missing values can lead to a loss of efficiency and unreliable results, especially for large missing sub-sequence(s). Some well-known methods for multivariate time series imputation require high correlations between series or their features. In this paper, we propose an approach based on the shape-behaviour relation in low/un-correlated multivariate time series under an assumption of recurrent data. This method involves two main steps. Firstly, we find the most similar sub-sequence to the sub-sequence before (resp.after) a gap based on the shape-features extraction and Dynamic Time Warping algorithms. Secondly, we fill in the gap by the next (resp.previous) sub-sequence...
Tipo: Text Palavras-chave: Imputation; Uncorrelated multivariate time series; Missing data; Dynamic Time Warping; Similarity measures.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00429/54082/55378.pdf
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