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Registros recuperados: 11
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Projecting changes in the distribution and productivity of living marine resources: A critical review of the suite of modeling approaches used in the large European project VECTORS ArchiMer
Peck, Myron A.; Arvanitidis, Christos; Butenschon, Momme; Canu, Donata Melaku; Chatzinikolaou, Eva; Cucco, Andrea; Domenici, Paolo; Fernandes, Jose A.; Gasche, Loic; Huebert, Klaus B.; Hufnagl, Marc; Jones, Miranda C.; Kempf, Alexander; Keyl, Friedemann; Maar, Marie; Mahevas, Stephanie; Marchal, Paul; Nicolas, Delphine; Pinnegar, John K.; Rivot, Etienne; Rochette, Sebastien; Sell, Anne F.; Sinerchia, Matteo; Solidoro, Cosimo; Somerfield, Paul J.; Teal, Lorna R.; Travers-trolet, Morgane; Van De Wolfshaar, Karen E..
We review and compare four broad categories of spatially-explicit modelling approaches currently used to understand and project changes in the distribution and productivity of living marine resources including: 1) statistical species distribution models, 2) physiology-based, biophysical models of single life stages or the whole life cycle of species, 3) food web models, and 4) end-to-end models. Single pressures are rare and, in the future, models must be able to examine multiple factors affecting living marine resources such as interactions between: i) climate-driven changes in temperature regimes and acidification, ii) reductions in water quality due to eutrophication, iii) the introduction of alien invasive species, and/or iv) (over-)exploitation by...
Tipo: Text Palavras-chave: Distribution; Modelling; Habitat; Resources; Man-induced effects.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00337/44845/44436.pdf
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The impact of mechanical compression on cortical microtubules in Arabidopsis: a quantitative pipeline ArchiMer
Louveaux, Marion; Rochette, Sebastien; Beauzamy, Lena; Boudaoud, Arezki; Hamant, Olivier.
Exogenous mechanical perturbations on living tissues are commonly used to investigate whether cell effectors can respond to mechanical cues. However, in most of these experiments, the applied mechanical stress and/or the biological response are described only qualitatively. We developed a quantitative pipeline based on microindentation and image analysis to investigate the impact of a controlled and prolonged compression on microtubule behaviour in the Arabidopsis shoot apical meristem, using microtubule fluorescent marker lines. We found that a compressive stress, in the order of magnitude of turgor pressure, induced apparent microtubule bundling. Importantly, that response could be reversed several hours after the release of compression. Next, we tested...
Tipo: Text Palavras-chave: Mechanical stress; Indenter; Microtubules; Compression; Bundling; Arabidopsis thaliana; Technical advance.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00347/45829/45479.tiff
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Spatio-Temporal Variability of the North Sea Cod Recruitment in Relation to Temperature and Zooplankton ArchiMer
Nicolas, Delphine; Rochette, Sebastien; Llope, Marcos; Licandro, Priscilla.
The North Sea cod (Gadus morhua, L.) stock has continuously declined over the past four decades linked with overfishing and climate change. Changes in stock structure due to overfishing have made the stock largely dependent on its recruitment success, which greatly relies on environmental conditions. Here we focus on the spatio-temporal variability of cod recruitment in an effort to detect changes during the critical early life stages. Using International Bottom Trawl Survey (IBTS) data from 1974 to 2011, a major spatio-temporal change in the distribution of cod recruits was identified in the late 1990s, characterized by a pronounced decrease in the central and southeastern North Sea stock. Other minor spatial changes were also recorded in the mid-1980s...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00181/29250/27654.pdf
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Coupling hydrodynamic and individual-based models to simulate long-term larval supply to coastal nursery areas ArchiMer
Rochette, Sebastien; Huret, Martin; Rivot, Etienne; Le Pape, Olivier.
For many marine fish species, recruitment is strongly related to larval survival and dispersal to nursery areas. Simulating larval drift should help assessing the sensitivity of recruitment variability to early life history. An individual-based model (IBM) coupled to a hydrodynamic model was used to simulate common sole larval supply from spawning areas to coastal and estuarine nursery grounds at the population scale in the eastern Channel on a 14-yr time series, from 1991 to 2004. The IBM allowed each particle released to be transported by currents from the hydrodynamic model, to grow with temperature, to migrate vertically giving stage development, and possibly to die according to drift duration, representing the life history from spawning to...
Tipo: Text Palavras-chave: Eastern Channel; Hydrodynamic model; Individual-based model; Larval supply; Nursery grounds; Recruitment variability; Solea solea.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00085/19598/17236.pdf
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Cartographie prédictive du champ de laminaires du plateau Molène sur la base des données physiques et biologiques ArchiMer
Bajjouk, Touria; Rochette, Sebastien; Ehrhold, Axel; Cordier, Celine; Laurans, Martial; Tourolle, Julie; Hamdi, Anouar; Tourolle, Julie; Gaffet, Jean-dominique; Caisey, Xavier; Vasquez, Mickael; Populus, Jacques.
Tipo: Text
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00280/39159/37722.pdf
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Modeling marine shad distribution using data from French bycatch fishery surveys ArchiMer
Trancart, T.; Rochette, Sebastien; Acou, Anthony; Lasne, E.; Feunteun, Eric.
In the last few decades, there has been a marked decline in the number of shad (Alosa alosa and A. fallax) landed in France, which prompted the French committee of the International Union for Conservation of Nature to list shad as a ‘Vulnerable’ species in 2010. The freshwater phases of shad life cycles have been extensively studied, but the marine phases remain poorly understood. The present study aimed to provide new insights into shad ecology by describing the marine distributions of twaite and allis shad using a presence/absence model based on bycatch data from commercial fishery surveys. Depth and salinity were identified as the main factors influencing shad distribution. Both species were primarily located in shallow areas, at depths of between 0 and...
Tipo: Text Palavras-chave: Alosa alosa; Alosa fallax; Distribution; Migration; Binomial model.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00213/32397/30863.pdf
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Integrating mark-recapture data within a Bayesian life-cycle model to evaluate spatial structure and population dynamics of sole. A coastal and nursery dependent flatfish : Eastern Channel Sole ArchiMer
Veron, Matthieu; Archambault, Benoit; Rochette, Sebastien; Hunter, Ewan; Lehuta, Sigrid; Randon, Marine; Savina-rolland, Marie; Vermard, Youen; Reveillac, Elodie; Rivot, Etienne; Le Pape, Olivier.
The common sole -Solea solea- is one of the most harvested flatfish population in the Eastern English Channel -EEC; ICES area VIId-. In the EEC, this population is currently assessed and managed as a homogeneous single stock. However, some ecological clues indicate that a metapopulation structure formed by a set of three loosely connected subpopulations associated with local coastal nurseries areas cannot be ruled out. Results show that key estimates of population dynamics parameters, stock assessment and management reference points are highly sensitive to the hypotheses made on the spatial structure. A Bayesian integrated life-cycle model was developed to explore the sensitivity of population dynamics and stock assessment to the level of connectivity in...
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Ano: 2017 URL: http://archimer.ifremer.fr/doc/00410/52134/52844.pdf
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A hierarchical Bayesian model for embedding larval drift and habitat models in integrated life cycles for exploited fish ArchiMer
Rochette, Sebastien; Le Pape, Olivier; Vigneau, Joel; Rivot, Etienne.
This paper proposes a hierarchical Bayesian framework for modeling the life cycle of marine exploited fish with a spatial perspective. The application was developed for a nursery-dependent fish species, the common sole (Solea solea), on the Eastern Channel population (Western Europe). The approach combined processes of different natures and various sources of observations within an integrated framework for life-cycle modeling: (1) outputs of an individual-based model for larval drift and survival that provided yearly estimates of the dispersion and mortality of eggs and larvae, from spawning grounds to settlement in several coastal nurseries; (2) a habitat suitability model, based on juvenile trawl surveys coupled with a geographic information system, to...
Tipo: Text Palavras-chave: Eastern Channel (Western Europe); Habitat suitability model; Hierarchical Bayesian model; Hydrodynamic models; Integrated model; Larval drift; Life cycle; Nursery; Recruitment; Sole; Solea solea; Spatially structured.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00161/27243/25454.pdf
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A toolbox to evaluate data reliability for whole-ecosystem models: Application on the Bay of Biscay continental shelf food-web model ArchiMer
Lassalle, Geraldine; Bourdaud, Pierre; Saint-beat, Blanche; Rochette, Sebastien; Niquil, Nathalie.
Ecosystem models are always simplifications of reality and as such their application for ecosystem-based management requires standard validation. Here, the “DataReli” toolbox is proposed to evaluate the quality of the data used during the construction of ecosystem models, their coherence across trophic levels, and whether data limitations prevent the model long-term applications. This toolbox is the combination of three operational and complementary analyses: (i) the pedigree index to determine to what extent a model was calibrated on data of local origin; (ii) the graphical analysis known as PREBAL to assess whether a model respects some basic ecological and fisheries principles; and (iii) a sensitivity analysis to evaluate the robustness of model...
Tipo: Text Palavras-chave: Food-web model; Ecopath; Model evaluation; Parameter uncertainty; Ecosystem-based management; Bay of Biscay.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00188/29969/28484.pdf
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Quantification of interdependencies between economic systems and ecosystem services: An input-output model applied to the Seine estuary ArchiMer
Cordier, Mateo; Perez Agundez, José A.; O'Connor, Martin; Rochette, Sebastien; Hecq, Walter.
The aim of this paper is to assess the possible contribution of an input-output model towards two of the basic principles of the sustainability strategy of integrated coastal zone management (ICZM) and Post-Normal Science. According to these principles, decision-support tools should offer a holistic perspective and handle high uncertainty. The difficulties in reaching sustainability are due partly to the prevailing use of "narrow-system-boundary" tools that are non-holistic. Consequently, they fail to capture important ecosystem services and ignore interdependencies between them. To comply with the basic principles, our method allows environmental assets to be evaluated in multiple units and integrates results from recent researches in natural sciences....
Tipo: Text Palavras-chave: Input-output; Ecosystem services; Participative process; Integrated coastal zone management; Post-Normal Science; Decision-support.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00041/15222/12708.pdf
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Multi-decadal changes in two co-occurring ophiuroid populations ArchiMer
Blanchet, Aline; Dubois, Stanislas; Hily, Christian; Rochette, Sebastien; Le Goaster, Edouard; Guillou, Monique.
Mixed beds of Ophiocomina nigra and Ophiothrix fragilis (Echinodermata, Ophiuroidea) are usually predominated by O. fragilis and are reported to be stable over time. The Bay of Brest (Brittany, France) is a highly productive ecosystem where both species co-occur in the main central part. Using a geostatistical approach, we tested for changes in O. nigra and O. fragilis density and total biomass patterns between 1987 and 2011. Our results highlighted an increase in O. nigra population size and the induction of a spatial shift of the co-occurring O. fragilis. O. nigra increased similar to 5 times in density and covered almost all the study area, while its density-dependent biomass increased similar to 3 times (22 t km(-2), ash-free dry mass) between 1987 and...
Tipo: Text Palavras-chave: Echinoderm; Ophiocomina nigra; Ophiothrix fragilis; Food supply; Kriging method; Suspension-feeder.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00090/20136/17782.pdf
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