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JSBML: a flexible and entirely Java-based library for working with SBML Nature Precedings
Andreas Dräger; Nicolas Rodriguez; Marine Dumousseau; Alexander Dörr; Clemens Wrzodek; Roland Keller; Sebastian Fröhlich; Nicolas Le Novère; Andreas Zell; Michael Hucka.
The specifications of the Systems Biology Markup Language (SBML) define standards for storing and exchanging computer models of biological processes in text files. In order to perform model simulations, graphical visualizations and other software manipulations, an in-memory representation of SBML is required. We developed JSBML for this purpose. In contrast to prior implementations of SBML APIs, JSBML has been designed from the ground up for the Java™ programming language, and can therefore be used on all platforms supported by a Java Runtime Environment. This offers important benefits for Java users, including the ability to distribute software as Java Web Start applications. JSBML supports all SBML Levels and Versions through Level 3 Version...
Tipo: Poster Palavras-chave: Bioinformatics; Data Standards.
Ano: 2011 URL: http://precedings.nature.com/documents/6372/version/1
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