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Nonconventional amide bond formation catalysis: programming enzyme specificity with substrate mimetics BJMBR
Bordusa,F..
This article reports on the design and characteristics of substrate mimetics in protease-catalyzed reactions. Firstly, the basis of protease-catalyzed peptide synthesis and the general advantages of substrate mimetics over common acyl donor components are described. The binding behavior of these artificial substrates and the mechanism of catalysis are further discussed on the basis of hydrolysis, acyl transfer, protein-ligand docking, and molecular dynamics studies on the trypsin model. The general validity of the substrate mimetic concept is illustrated by the expansion of this strategy to trypsin-like, glutamic acid-specific, and hydrophobic amino acid-specific proteases. Finally, opportunities for the combination of the substrate mimetic strategy with...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Bioorganic chemistry; Enzyme catalysis; Peptide synthesis; Proteases; Substrate mimetics.
Ano: 2000 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2000000500001
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Recent progress in diazirine based photoaffinity labeling OAK
Hashimoto, Makoto; Hatanaka, Yasumaru; 橋本, 誠.
Based on the recent development of molecular biology, the investigation of biofunctional machinery at their ligand accepting interface has become one of the challenging and important subject of post-genome field. The technique of photoaffinity labeling has become increasingly appreciated as a powerful methodology for the purpose. This micro review focused synthesis of trifluoromethylphenyldiazirine, which is one of the most promising photophore, and its application to the biomolecules.
Palavras-chave: Photoaffinity labeling; Chemical biology; Bioorganic chemistry; Structure-activity relationships; Diazirine.
Ano: 2008 URL: http://ir.obihiro.ac.jp/dspace/handle/10322/2700
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