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Optimization of character coding and a stepwise execution of cladistic analyses Naturalis
Vaupel Klein, J.C. von.
The absence/presence routine of character coding is examined in regard to minimizing its inherent redundancy effects with the purpose of optimizing the structuring of a comprehensive, binary datamatrix. Cladistic analytical procedures are next evaluated with respect to the successive use of such a datamatrix at different hierarchical levels. It is concluded that performing a stepwise analysis has various advantages over the more oft en employed techniques, i.e., the ‘total analysis’ routines and the ‘partitioned’ approaches.
Tipo: Article / Letter to the editor Palavras-chave: A/p coding; Absence/presence coding; Binarization; Character coding; Character linkage; Cladistic; 42.86.
Ano: 2009 URL: http://www.repository.naturalis.nl/record/311950
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Boolean logic and character state identity: pitfalls of character coding in metazoan cladistics Naturalis
Jenner, Ronald A..
A critical study of the morphological data sets used for the most recent analyses of metazoan cladistics exposes a rather cavalier attitude towards character coding. Binary absence/presence coding is ubiquitous, but without any explicit justification. This uncompromising application of Boolean logic in character coding is remarkable since several recent investigations have nominated absence/presence coding as the most problematic coding method available for standard cladistic analysis. Moreover, the prevalence of unspecified “absence” character states in the published data sets introduces a discrepancy between the theoretical foundations of phylogenetic parsimony and current practices in metazoan cladistics. Because phylogenetic parsimony assumes...
Tipo: Article / Letter to the editor Palavras-chave: Metazoan cladistics; Metazoa; Character coding; Character state identity; Boolean logic; Nonadditive binary coding; Absence/presence coding.
Ano: 2002 URL: http://www.repository.naturalis.nl/record/534396
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