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Virioplankton Abundance in Trophic Gradients of an Upwelling Field BJM
Pereira,G.C.; Granato,A.; Figueiredo,A.R.; Ebecken,N.F.F..
This work correlates time series of biological and physical variables to the marine viruses across trophic gradients within Arraial do Cabo upwelling system, Southeast of Brazil. The objective is to investigate the major controlling factors of virioplankton dynamics among different water masses. It was used an in situ and ex situ flow cytometry for accessing the plankton community. Viruses were highly correlated to bacteria and phytoplankton, but although the lack of direct correlation with physicals, upwelling turned out to be the main contributing factor to the highest values of viral abundance and virus:bacterial ratio. Our data suggest that the lowest temperature of upwelled South Atlantic Central Waters would help to maintain a high viral abundance...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Marine virus; Coastal waters; Trophic gradients; Upwelling system.
Ano: 2009 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822009000400017
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Cu, Pb AND Zn DISTRIBUTION IN NEARSHORE WATERS IN SAN JORGE BAY, NORTHERN CHILE Gayana
Salamanca,Marco A.; Camaño,Andrés; Jara,Bibiana; Rodríguez,Tatiana.
An extensive spatial survey metal content to study the spatial distribution of Cu, Pb and Zn concentration in nearshore waters of San Jorge Bay, along the coast of Antofagasta City, Chile was carried out located near the Atacama desert, which represent the largest populated urban settlement in northern Chile (~ 260,000 inhabitants). The coastal zone of this area is under an intensive use as discharge location of pollutants of different sources. Dissolved Cu varies between 0.97 to 1.65 mug l-1, in the southern part of the study area and in front of an industrial discharge, respectively. The dissolved Pb shows a narrow concentration range (0.019 to 0.029 mug l-1) and Zn content varies between 1.7 mug l-1 in the northern part of the study area to 2.0 mug l-1,...
Tipo: Journal article Palavras-chave: Trace metal distribution; Coastal waters; Desert areas.
Ano: 2000 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-65382000000200009
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Etude sur les contaminants émergents dans les eaux françaises - Rapport de l'étude prospective sur les contaminants émergents dans les eaux littorales de la métropole et des DOM ArchiMer
Abarnou, Alain; Bocquene, Gilles; Champin, Maryline; Durand, Gaetane; Gonzalez, Jean-louis; Le Moigne, Morgan; Masson, Jean-claude; Priou, Pierre; Tixier, Celine.
This study contributes to inventory programme on emerging pollutants in French waters and to the general reflection which will enable to update the list of relevant substnaces to be included in the new monitoring programmes to come. This work concerns the coastal part of the inventory programme on marine waters and sediments of France and five overseas french departments (OFD). In this goal, passive sampling techniques and direct extraction techniques have been tested through the implementation of in situ systems integrators POCIS (Polar Organic Chemical Integrative Sampler) and the extraction by SBSE bars (Stir bar sorptive extraction) directly in the waters sampled. Finally, analyzes of sediment completed the acquisition of data. Arount 40 stations were...
Tipo: Text Palavras-chave: Eaux littorales; Eaux côtières; Sédiment; Métropole; DOM; Pollution; Substances chimiques; POCIS; SBSE; Coastal waters; Sediment; France; Overseas french departments; Pollution; Chemicals contaminants; POCIS; SBSE.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00259/36994/35483.pdf
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Simulation de l'effet sur l’eutrophisation côtière bretonne de 3 scénarios de réduction des teneurs en nitrate et phosphate de chaque bassin versant breton et de la Loire ArchiMer
Dussauze, Morgan; Menesguen, Alain.
This study commissioned by the Région Bretagne and the Agence de l'Eau Loire Bretagne aimed at assessing on a mathematical modelling basis the marine influence of most of watersheds in Brittany, and the impact of 4 scenarios of reduction of the loadings of each of these watersheds on the phytoplanctonic biomass and ulva mass proliferation. The ecological 3D model ECOMARS3D has been applied to a domain containing Brittany (which is also used in an operational mode for putting everyday the 2dayforecasts on the website: http://www.previmer.org/previsions/production_primaire/modele_eco_mars3d_bretagne) and to 6 zooms which enabled a finer representation of coastal waters. This study highlighted the fact that: •a nitrate reduction for any river has no effect on...
Tipo: Text Palavras-chave: Bretagne; Bassins versants; Eaux côtières; Nitrate; Phosphate; Marée verte; Ulve; Diatomée; Dinoflagellé; Modèle mathématique; Brittany; Watersheds; Coastal waters; Nitrate; Phosphate; Green tide; Ulva; Diatom; Dinoflagellate; Mathematical model.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/00097/20804/18429.pdf
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Rising water temperatures, reproduction and recruitment of an invasive oyster, Crassostrea gigas, on the French Atlantic coast ArchiMer
Dutertre, Mickael; Beninger, Peter G.; Barille, Laurent; Papin, Mathias; Haure, Joel.
The recent appearance and invasion of feral oysters (Crassostrea gigas) along the northern European Atlantic coast, underscores the necessity to investigate the relationship between environmental variables, reproductive physiology, larval development and recruitment. We studied these relationships at both high (HT) and intermediate (IT) - turbidity sites, through historical data on water temperatures, multi-parameter environmental probes, histological analyses, and field collections of planktonic larvae and settled post-larvae in 2005 and 2006. A progressive warming trend was observed, especially since 1995, when oyster proliferation first became severe. Threshold temperatures for oocyte growth, larval development and settlement were achieved in both 2005...
Tipo: Text Palavras-chave: Aquaculture; Climate warming; Coastal waters; Crassostrea gigas; Reproductive cycle; Oyster larvae; Settlement; Turbidity.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00000/11150/7938.pdf
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The relationship between depth, substrate and ecology: a drop video study from the southeastern Australian coast ArchiMer
Williams, Im; Leach, Jhj.
The relationship between hard substrate type, depth and ecology has not been widely investigated in Bass Strait, which separates mainland Australia from Tasmania. As this water body is important to the State, a study along the Victorian coastline using an inexpensive Along Track Video (ATV) system, along with equipment to record depths and locations, was implemented. A better understanding of the correlation between hard substrate, depth and ecology was thought to be valuable to enable researchers to determine to what extent the benthic biological communities depend on physical factors. This understanding should improve procedures to predict the seafloor ecology on the basis of geological and oceanographic data. The dominant species assemblages and...
Tipo: Text Palavras-chave: Suivi vidéo; Vidéographie; Eau côtière; Victoria; Ressources marines sessiles; Along Track Video (ATV); Marine videography; Coastal waters; Victoria; Sessile marine resources.
Ano: 1999 URL: http://archimer.ifremer.fr/doc/00325/43589/44029.pdf
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Bilan 1997 de la contamination des eaux côtières françaises par les composés organostanniques. ArchiMer
Michel, Pierre; Averty, Bernard.
Il y a quinze ans, la France prenait des mesures réglementaires pour restreindre l'usage des composés organostanniques dans les peintures antisalissures utilisées pour la protection des coques de bateaux. Il s'agissait alors d'une réaction d'urgence face au problème vital posé à l'ostréiculture française. La France était le premier pays à prendre de telles dispositions. Depuis, la réglementation a été confirmée à plusieurs reprises, en dernier lieu par le décret n°92-1074 du 2 octobre 1992. Quinze ans plus tard, où en sommes nous ? La campagne de mesure des composés organostanniques dans l'eau de mer, conduite par l'IFREMER de juillet à septembre 1997 a permis de faire le point de la situation. La contamination des côtes françaises reste préoccupante. Pour...
Tipo: Text Palavras-chave: Composés organostanniques; Tributyl étain; TBT; Peintures antisalissures; Eaux côtières; Organotin compounds; Ributyltin; TBT; Antifouling paints; Coastal waters.
Ano: 1998 URL: http://archimer.ifremer.fr/doc/00104/21557/19136.pdf
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Etude de la matière organique et demande en oxygène des sédiments en baie de vilaine ArchiMer
Merceron, Michel.
After the fish mortality through an anoxia, which occured during the summer of 1982 in the bay of Vilaine, the oxygen consumption of the sediment was investigated during spring and summer. It was found moderately important, submitted to limited evolutions along time and on different zones. A significant correlation with the organic carbon content of sediment could not be established. The oxygen consumption of the bottom waters was approached. In the bay of Vilaine as a whole, it was found more important than the sediment consumption. It could vary in a wide range, till leading to pronounced hypoxias, especially during phytoplankton. (Not controlled OCR)
Tipo: Text Palavras-chave: Organic matter; Water oxygen consumption; Sediment oxygen consumption; Anoxia; Dissolved oxygen; Coastal waters; Matière organique; Respiration de la phase liquide; Respiration du sédiment; Anoxie; Oxygène dissous; Eaux côtières.
Ano: 1986 URL: http://archimer.ifremer.fr/doc/1986/rapport-2666.pdf
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Potential of High Spatial and Temporal Ocean Color Satellite Data to Study the Dynamics of Suspended Particles in a Micro-Tidal River Plume ArchiMer
Ody, Anouck; Doxaran, David; Vanhellemont, Quinten; Nechad, Bouchra; Novoa, Stefani; Many, Gael; Bourrin, Francois; Verney, Romaric; Pairaud, Ivane; Gentili, Bernard.
Ocean color satellite sensors are powerful tools to study and monitor the dynamics of suspended particulate matter (SPM) discharged by rivers in coastal waters. In this study, we test the capabilities of Landsat-8/Operational Land Imager (OLI), AQUA&TERRA/Moderate Resolution Imaging Spectroradiometer (MODIS) and MSG-3/Spinning Enhanced Visible and Infrared Imager (SEVIRI) sensors in terms of spectral, spatial and temporal resolutions to (i) estimate the seawater reflectance signal and then SPM concentrations and (ii) monitor the dynamics of SPM in the Rhone River plume characterized by moderately turbid surface waters in a micro-tidal sea. Consistent remote-sensing reflectance (Rrs) values are retrieved in the red spectral bands of these four satellite...
Tipo: Text Palavras-chave: River plumes; Coastal waters; High resolution; Suspended particulate matter; Remote sensing.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00333/44408/44066.pdf
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Balneola vulgaris gen. nov., sp nov., a member of the phylum Bacteroidetes from the north-western Mediterranean Sea ArchiMer
Urios, Laurent; Agogue, Hélène; Lesongeur, Francoise; Stackebrandt, Erko; Lebaron, Philippe.
A novel aerobic, Gram-negative bacterium, named 13IX/A01/164(T), was isolated from surface waters in the coastal north-western Mediterranean Sea. Cells were motile, straight rods, 2-5 mu m long and 0-2 mu m wide, and formed orange colonies on marine agar medium. The G+C content of the genomic DNA of strain 13IX/A01/164T was 42 mol%. Phylogenetic analysis of the 16S rRNA gene sequence placed the strain in the phylum Bacteroidetes within the family Crenotrichaceae. On the basis of 16S rRNA gene sequence comparison and physiological and biochemical characteristics, this isolate represents a novel species of a new genus, for which the name Balneola vulgaris gen. nov., sp. nov. is proposed. The type strain of Balneola vulgaris is 13IX/A01/164T (=DSM 17893T=CIP...
Tipo: Text Palavras-chave: Mediterranean sea; Coastal waters; Microbiology; Physiology; Biochemistry; Gene sequence; Balneola vulgaris.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-2126.pdf
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Metal measurement in aquatic environments by passive sampling methods: Lessons learning from an in situ intercomparison exercise ArchiMer
Dabrin, A.; Ghestem, J. -p.; Uher, E.; Gonzalez, Jean-louis; Allan, I. J.; Schintu, M.; Montero, N.; Balaam, J.; Peinerud, E.; Miege, C.; Coquery, M..
Passive sampling devices (PS) are widely used for pollutant monitoring in water, but estimation of measurement uncertainties by PS has seldom been undertaken. The aim of this work was to identify key parameters governing PS measurements of metals and their dispersion. We report the results of an in situ intercomparison exercise on diffusive gradient in thin films (DGT) in surface waters. Interlaboratory uncertainties of time-weighted average (TWA) concentrations were satisfactory (from 28% to 112%) given the number of participating laboratories (10) and ultra-trace metal concentrations involved. Data dispersion of TWA concentrations was mainly explained by uncertainties generated during DGT handling and analytical procedure steps. We highlight that DGT...
Tipo: Text Palavras-chave: DGT; Uncertainty; Blank; Continental waters; Coastal waters.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00294/40560/39614.pdf
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Mise en evidence et evaluation de l'enrichissement bacterien du film de surface des eaux littorales d'effluents urbains ArchiMer
Beucher, M; Plusquellec, A; Legal, Y; Cleret, J.
Sea water samples were collected in the vicinity of urban non-treated, urban treated and industrial outfalls. The samples belonged to two differents types: the first one consisted of the surface film, the second was the corresponding water at 50 cm depth. The enumeration of the bacteria in both types of samples indicated a significant concentration of the mesophilic flora and of the indicators of fecal pollution in the surface film. The value of the concentrating factor depended largely on the nature of the sewage and did not reflect differences between the various bacterial groups. At one of the stations a very significant regression was demonstrated between surface sample and depth sample.
Tipo: Text Palavras-chave: Bacteria; Bacteriology; Bacterial counters; Industrial wastes; Pollution indicators; Coastal waters; Microbial contamination; Indicator species; Sewage; Outfalls; Surface films.
Ano: 1984 URL: http://archimer.ifremer.fr/doc/1984/acte-1006.pdf
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When riverine dissolved organic matter (DOM) meets labile DOM in coastal waters: changes in bacterial community activity and composition ArchiMer
Blanchet, Marine; Pringault, Olivier; Panagiotopoulos, Christos; Lefevre, Dominique; Charriere, Bruno; Ghiglione, Jean-francois; Fernandez, Camila; Aparicio, Fran L.; Marrase, Celia; Catala, Philippe; Oriol, Louise; Caparros, Jocelyne; Joux, Fabien.
Heterotrophic bacterial communities in marine environments are exposed to a heterogeneous mixture of dissolved organic compounds with different bioreactivity that may control both their activity and composition. The coastal environment is an example of a mixing area where recalcitrant allochthonous organic matter from rivers can encounter labile organic matter from marine phytoplanktonic blooms. The objective of this study was to explore the effects of mixed qualities of dissolved organic matter (DOM) on bacterial community activity (BCA) and bacterial community composition (BCC) and to test for a priming effect when DOM sources are added in combination. Coastal marine bacterial communities were incubated separately with a mixture of amino acids and with...
Tipo: Text Palavras-chave: Dissolved organic matter; Biodegradation; Coastal waters; Bacterial community composition; Priming effect.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00625/73737/74701.pdf
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Which ocean colour algorithm for MERIS in North West European waters? ArchiMer
Tilstone, Gavin; Mallor-hoya, Silvana; Gohin, Francis; Couto, Andre Belo; Sa, Carolina; Goela, Priscila; Cristina, Sonia; Airs, Ruth; Icely, John; Zuehlke, Marco; Groom, Steve.
Chlorophyll-a (Chl a) is a key parameter for the assessment of water quality in coastal and shelf environments. The availability of satellite ocean colour offers the potential of monitoring these regions at unprecedented spatial and temporal scales, as long as a high level of accuracy can be achieved. To use satellite derived Chl a to monitor these environments, it is imperative that rigorous accuracy assessments are undertaken to select the most accurate ocean colour algorithm(s). To this end, the accuracy of a range of ocean colour Chl a algorithms for use with Medium Imaging Resolution Spectrometer (MERIS) Level 2 (L2) Remote Sensing Reflectance (Rrs), using two different atmospheric correction (AC) processors (COASTCOLOUR and MERIS Ground Segment...
Tipo: Text Palavras-chave: Case 2 waters; Coastal waters; Shelf waters; Chlorophyll-a; North Sea; Ocean colour; Remote sensing; MERIS; English Channel; Mediterranean coast; Portuguese coast.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00359/46995/48634.pdf
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Atmospheric Corrections and Multi-Conditional Algorithm for Multi-Sensor Remote Sensing of Suspended Particulate Matter in Low-to-High Turbidity Levels Coastal Waters ArchiMer
Novoa, Stefani; Doxaran, David; Ody, Anouck; Vanhellemont, Quinten; Lafon, Virginie; Lubac, Bertrand; Gernez, Pierre.
The accurate measurement of suspended particulate matter (SPM) concentrations in coastal waters is of crucial importance for ecosystem studies, sediment transport monitoring, and assessment of anthropogenic impacts in the coastal ocean. Ocean color remote sensing is an efficient tool to monitor SPM spatio-temporal variability in coastal waters. However, near-shore satellite images are complex to correct for atmospheric effects due to the proximity of land and to the high level of reflectance caused by high SPM concentrations in the visible and near-infrared spectral regions. The water reflectance signal ((w)) tends to saturate at short visible wavelengths when the SPM concentration increases. Using a comprehensive dataset of high-resolution satellite...
Tipo: Text Palavras-chave: Remote sensing; Suspended particulate matter; Coastal waters; River plumes; Multi-conditional algorithm.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00590/70197/68222.pdf
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Determination du profil des flores bacteriennes des zones littorales. Application a l'evaluation de l'impact des rejets ArchiMer
Bunetel, L; Segui, A; Guerin, J; Lerman, I; Cormier, M.
The principle of this method is to evaluate, by counts exercised upon selective media, the relative importance of the different bacteria families in the flora of the coastal waters. It is important to separate the contaminant species and the commensal species in the marine environment. Ten culture media distributed into four categories (selective, non selective, saline and non saline) were examined by numeration. Counts were transferred on a diagram allowing to plot down a profile of bacterial flora of water sampled from a given geographical area. The profiles are arranged by a classification method. The sampling points with similar or adjoining profiles were assembled and marked on the chart. In this way, the authors obtained areas representing the impact...
Tipo: Text Palavras-chave: Bacteria; Coastal waters; Microbiological culture; Sewage disposal; Microbial contamination; Bacterial counters; Bacteria collecting devices.
Ano: 1984 URL: http://archimer.ifremer.fr/doc/1984/acte-1004.pdf
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Manual for using REPHY Data. Information to improve the understanding of REPHY data files available to scientists and the public ArchiMer
Ifremer / ODE / VIGIES. REPHY national coordination & Quadrige administration unit.
REPHY (Observation and Monitoring Network for Phytoplankton and Hydrology in coastal waters) is a network implemented by Ifremer. The data acquired by REPHY have been banked since 1987 in the Quadrige database. This manual is intended for users of REPHY data, which are made available on the internet from SEANOE. The Quadrige database is a component of the French Water Information System and its mission is to manage and exploit data from numerous coastal monitoring networks. SEANOE (Sea scientific open data publication) is a publisher of scientific data in the field of marine sciences. The REPHY dataset available in SEANOE makes available all REPHY data for the French metropolis, for years prior to the current year, in the form of fixed files, with an...
Tipo: Text Palavras-chave: REPHY; Data; Quadrige; SEANOE; DOI; Phytoplankton; Hydrology; Physico‐chemical measurements; Coastal waters.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00409/52017/52675.pdf
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Quality-control tests for OC4, OC5 and NIR-red satellite chlorophyll-a algorithms applied to coastal waters ArchiMer
Lavigne, H.; Van Der Zande, D.; Ruddick, K.; Cardoso Dos Santos, J.f.; Gohin, Francis; Brotas, V.; Kratzer, S..
Reliable satellite estimates of chlorophyll-a concentration (Chl-a) are needed in coastal waters for applications such as eutrophication monitoring. However, because of the optical complexity of coastal waters, retrieving accurate Chl-a is still challenging. Many algorithms exist and give quite different performance for different optical conditions but there is no clear definition of the limits of applicability of each algorithm and no clear basis for deciding which algorithm to apply to any given image pixel (reflectance spectrum). Poor quality satellite Chl-a data can easily reach end-users. To remedy this and provide a clear decision on when a specific Chl-a algorithm can be used, we propose simple quality control tests, based on MERIS water leaving...
Tipo: Text Palavras-chave: Ocean colour; Chlorophyll-a algorithms; Coastal waters; Quality control; Algorithm-switching approach; MERIS; OLCI; Sentinel-3.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00675/78758/80933.pdf
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Manual for using REPHYTOX Data. Information to improve the understanding of REPHYTOX data files available to scientists and the public ArchiMer
Ifremer, ODE/VIGIES, REPHY-REPHYTOX national coordination & Quadrige administration unit.
REPHYTOX (Monitoring Network for Phycotoxins in marine organisms) is a network implemented by Ifremer. The data acquired by REPHYTOX have been banked since 1987 in the Quadrige database. This manual is intended for users of REPHYTOX data, which are made available on the internet from SEANOE. The Quadrige database is a component of the French Water Information System and its mission is to manage and exploit data from numerous coastal monitoring networks. SEANOE (Sea scientific open data publication) is a publisher of scientific data in the field of marine sciences. The REPHYTOX dataset available in SEANOE makes available all REPHYTOX data for the French metropolis, for years prior to the current year, in the form of fixed files, with an annual update. The...
Tipo: Text Palavras-chave: REPHYTOX; Data; Quadrige; SEANOE; DOI; Phycotoxins; DSP; PSP; ASP; Palytoxins; Shellfish; Coastal waters.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00409/52019/52677.pdf
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Development of a Semi-Analytical Algorithm for the Retrieval of Suspended Particulate Matter from Remote Sensing over Clear to Very Turbid Waters ArchiMer
Han, Bing; Loisel, Hubert; Vantrepotte, Vincent; Meriaux, Xavier; Bryere, Philippe; Ouillon, Sylvain; Dessailly, David; Xing, Qianguo; Zhu, Jianhua.
Remote sensing of suspended particulate matter, SPM, from space has long been used to assess its spatio-temporal variability in various coastal areas. The associated algorithms were generally site specific or developed over a relatively narrow range of concentration, which make them inappropriate for global applications (or at least over broad SPM range). In the frame of the GlobCoast project, a large in situ data set of SPM and remote sensing reflectance, R-rs(lambda), has been built gathering together measurements from various coastal areas around Europe, French Guiana, North Canada, Vietnam, and China. This data set covers various contrasting coastal environments diversely affected by different biogeochemical and physical processes such as sediment...
Tipo: Text Palavras-chave: Specific backscattering coefficient; Empirical algorithm; Semi-analytic algorithm; Coastal waters; Suspended particulate matter; Ocean color.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00589/70062/68010.pdf
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