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Zero-inflated Poisson regression models for QTL mapping applied to tick-resistance in a Gyr x Holstein F2 population Genet. Mol. Biol.
Silva,Fabyano Fonseca; Tunin,Karen P.; Rosa,Guilherme J.M.; Silva,Marcos V.B. da; Azevedo,Ana Luisa Souza; Verneque,Rui da Silva; Machado,Marco Antonio; Packer,Irineu Umberto.
Nowadays, an important and interesting alternative in the control of tick-infestation in cattle is to select resistant animals, and identify the respective quantitative trait loci (QTLs) and DNA markers, for posterior use in breeding programs. The number of ticks/animal is characterized as a discrete-counting trait, which could potentially follow Poisson distribution. However, in the case of an excess of zeros, due to the occurrence of several noninfected animals, zero-inflated Poisson and generalized zero-inflated distribution (GZIP) may provide a better description of the data. Thus, the objective here was to compare through simulation, Poisson and ZIP models (simple and generalized) with classical approaches, for QTL mapping with counting phenotypes...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Dairy; Cattle; Tick infestation; QTL regression; Generalized linear model.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572011000400008
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Estimating gear efficiency in a combined acoustic and trawl survey, with reference to the spatial distribution of demersal fish ArchiMer
Doray, Mathieu; Mahevas, Stephanie; Trenkel, Verena.
Few analyses have been performed to estimate the efficiency of trawls targeting demersal fish using the ratio of catches and acoustic densities. In summer 2006, acoustic and fishing data were collected simultaneously over 3 d by three fishing vessels equipped with identical pelagic trawls in the Bay of Biscay. Variography identified moderate spatial autocorrelation in the acoustic backscatter at a mean scale of 3 km, a scale slightly smaller than the mean haul length (3.5 km), indicating that fish horizontal availability did not influence trawl efficiency. Acoustic backscattering densities expressed as nautical area scattering coefficients (NASCs) recorded in the trawled layer were compared with equivalent NASC (ENASC) values calculated from the species...
Tipo: Text Palavras-chave: Availability; Bay of Biscay; Catchability; Generalized linear model; Geostatistics; Hake; Vulnerability.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00002/11372/7980.pdf
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The effectiveness of the continuous underway fish egg sampler compared with standard vertical plankton hauls for sampling the eggs of demersal species in the southern North Sea ArchiMer
Lelievre, Stephanie; Vaz, Sandrine; Fox, Christopher.
To date, the continuous underway fish egg sampler (CUFES) has been used primarily to map the spawning areas of pelagic fish in upwelling regions. To assess its utility in mapping the spawning grounds of demersal species, species composition and densities of eggs collected by CUFES were compared with results obtained from ring-net samples (VET: vertical egg trawl) from the southern North Sea over three annual cruises conducted in January/February. CUFES collected slightly fewer eggs per unit volume of water filtered when compared with vertically integrated samples but maps of egg distributions from both devices showed broadly similar patterns. Geostatistical analyses revealed that small-scale variability was greater with CUFES than with VET. CUFES may thus...
Tipo: Text Palavras-chave: Continuous underway fish egg sampler; CUFES; Fish eggs; Generalized linear model; Spatial distribution; Vertical egg trawl.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00065/17663/15193.pdf
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Generalized power calculations for generalized linear models and more AgEcon
Newson, Roger.
The powercal command can compute any one of the five quantities involved in power calculations from the other four. These quantities are power, significance level, detectable difference, sample number, and the standard deviation (SD) of the influence function, which is equal to the standard error multiplied by the square root of the sample number. powercal can take arbitrary expressions (involving constants, scalars, or variables) as input and calculate the output as a new variable. The user can therefore plot input variables against output variables, and this often communicates the tradeoffs involved better than a point calculation as output by the sampsi command. General formulas are given for calculating the SD of the influence function when the...
Tipo: Journal Article Palavras-chave: Powercal; Power; Alpha; Significance level; Detectable difference; Detectable ratio; Sample number; Standard deviation; Influence function; Sample design; Generalized linear model; Proportion; Arithmetic mean; Algebraic mean; Geometric mean; Odds; Research Methods/ Statistical Methods.
Ano: 2004 URL: http://purl.umn.edu/116258
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Leaf count overdispersion in coffee seedlings Ciência Rural
Silva,Edilson Marcelino; Furtado,Thais Destefani Ribeiro; Fernandes,Jaqueline Gonçalves; Cirillo,Marcelo Ângelo; Muniz,Joel Augusto.
ABSTRACT: Coffee crops play an important role in Brazilian agriculture, with a high level of social and economic participation resulting from the jobs created in the supply chain and from the income obtained by producers and the revenue generated for the country from coffee bean export. In coffee plant growth, leaves have a determinant role in higher production; therefore, the leaf count per plant provides relevant information to producers for adequate crop management, such as foliar fertilizer applications. To describe count data, the Poisson model is the most commonly employed model; when count data show overdispersion, the negative binomial model has been determined to be more adequate. The objective of this study was to compare the fitness of the...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Poisson model; Negative binomial model; Exponential family; Generalized linear model.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782019000400201
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