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Study of repeatability and phenotypical stabilization in kale using frequentist, Bayesian and bootstrap resampling approaches 1
Brito, Orlando Gonçalves; Andrade Júnior, Valter Carvalho de; Azevedo, Alcinei Mistico de; Donato, Luan Mateus Silva; Silva, Lidiane Rodrigues; Ferreira, Marcos Aurélio Miranda.
The aim of this study was to obtain information for the genetic improvement of kale through repeatability and phenotypic stabilization studies and to compare methodologies that represent the reliability of the estimated parameters. Thirty-three half-sib progenies were evaluated in a randomized block design with three replicates and six plants per plot. Eight harvests were evaluated in terms of the yield of fresh leaves, number of shoots, number of leaves and average mass of leaves. Then, a phenotypic repeatability and stabilization study was performed, estimating the genetic parameters σ2a, σ²g, σ²e, and the coefficient of environmental variation and repeatability using the frequentist and Bayesian methodologies. To evaluate the reliability of these...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Improvement; Genetics; Brassica oleracea var. Acephala; Crops..
Ano: 2019 URL: http://periodicos.uem.br/ojs/index.php/ActaSciAgron/article/view/42606
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Study of repeatability and phenotypical stabilization in kale using frequentist, Bayesian and bootstrap resampling approaches 1
Brito, Orlando Gonçalves; Andrade Júnior, Valter Carvalho de; Azevedo, Alcinei Mistico de; Donato, Luan Mateus Silva; Silva, Lidiane Rodrigues; Ferreira, Marcos Aurélio Miranda.
The aim of this study was to obtain information for the genetic improvement of kale through repeatability and phenotypic stabilization studies and to compare methodologies that represent the reliability of the estimated parameters. Thirty-three half-sib progenies were evaluated in a randomized block design with three replicates and six plants per plot. Eight harvests were evaluated in terms of the yield of fresh leaves, number of shoots, number of leaves and average mass of leaves. Then, a phenotypic repeatability and stabilization study was performed, estimating the genetic parameters σ2a, σ²g, σ²e, and the coefficient of environmental variation and repeatability using the frequentist and Bayesian methodologies. To evaluate the reliability of these...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Improvement; Genetics; Brassica oleracea var. Acephala; Crops..
Ano: 2019 URL: http://periodicos.uem.br/ojs/index.php/ActaSciAgron/article/view/42606
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Mitochondrial D-loop sequence variation among Central Javanese Duck in Indonesia 2
Susanti, R; Iswari, Retno Sri; Fibriana, Fidia; Sari, Retno Ika.
 This study was realized to determine the genetic variation of Central Javanese duck based on the D-Loop mtDNA gene. D-loop gene was amplified using PCR technique by specific primer and sequenced using dideoxy termination method with ABI automatic sequencer. ClustalW from MEGA-6.06 software program was employed for multiple alignments of nucleotide sequences. Nucleotide sequences of D-loop gene of mtDMA from the Central Javanese duck were aligned together with other Anas isolates from Genbank using ClustalW of MEGA-6.06 program. The estimation of genetic distance and phylogenetic tree construction were analyzed by Neighbor-Joining method, whereas the calculation of distance matrix was performed using Kimura 2-parameter. Multiple alignments obtained were...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Genetics; Animal sciences mtDNA; D-loop; Central Javanese duck; Genetic variation..
Ano: 2017 URL: http://periodicos.uem.br/ojs/index.php/ActaSciAnimSci/article/view/34352
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Does ethnic ancestry play a role in smoking? 42
SOUZA,ELISA S.T. DE; ARAÚJO,LUIZA F. DE; ALENCAR,DAYSE O. DE; SANTOS,SIDNEY E.B. DOS; SILVA Jr,WILSON A.; FERREIRA,CRISTIANE A.; BADDINI-MARTINEZ,JOSÉ.
The higher proportion of smokers among Black people in Brazil has been attributed to socioeconomic disparities, but genetic factors could also contribute for this finding. This study aimed at investigating associations between smoking status with genetically defined ethnic ancestry and socioeconomic features in Brazilians. Blood samples were collected from 448 volunteers (66.7% male; age: 37.1±11.4 years) classified as current smokers (CS: 60.9%), former smokers (FS: 8.9%) and never smokers (NS: 30.1%). Individual interethnic admixtures were determined using a 48 insertion-deletion polymorphisms ancestry-informative-marker panel. CS showed a lower amount of European ancestry than NS (0.837±0.243 X 0.883±0.194, p≤0.05) and FS (0.837±0.243 X 0.864±0.230,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Smoking; Ethnicity and health; Genetics; CYP2A6.
Ano: 2015 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652015000100447
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Familial hyperaldosteronism 56
Torpy,D.J.; Stratakis,C.A.; Chrousos,G.P..
Aldosterone, the major circulating mineralocorticoid, participates in blood volume and serum potassium homeostasis. Primary aldosteronism is a disorder characterised by hypertension and hypokalaemia due to autonomous aldosterone secretion from the adrenocortical zona glomerulosa. Improved screening techniques, particularly application of the plasma aldosterone:plasma renin activity ratio, have led to a suggestion that primary aldosteronism may be more common than previously appreciated among adults with hypertension. Glucocorticoid-remediable aldosteronism (GRA) was the first described familial form of hyperaldosteronism. The disorder is characterised by aldosterone secretory function regulated chronically by ACTH. Hence, aldosterone hypersecretion can be...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Aldosterone; Hyperaldosteronism; Genetics; Adrenal tumour; Hypertension.
Ano: 2000 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2000001000004
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Two pedigrees with restless legs syndrome in Brazil 56
Esteves,A.M.; Pedrazzoli,M.; Bagnato,M.; Moreira,F.; Mello,M.T. de; Tufik,S..
Numerous studies have suggested a substantial genetic contribution in the etiology of the primary form of restless legs syndrome (RLS) and periodic leg movements (PLM). We describe the symptoms, the sleep profiles and physiological parameters of two families in which several members present RLS/PLM. The proband of family 1 is a 70-year-old woman and the proband of family 2 is a 57-year-old woman; both have exhibited the symptoms since the age of 20 years. All patients in both families were diagnosed with RLS according to the criteria of the International RLS Study Group. Polysomnographic recordings were performed to quantify and to describe PLM during sleep. Sleep parameters showed decreased sleep efficiency, increased sleep latency in the arousal index...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Restless legs syndrome; Periodic leg movements; Genetics; Sleep.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2008000200005
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Effect of race, genetic population structure, and genetic models in two-locus association studies: clustering of functional renin-angiotensin system gene variants in hypertension association studies 56
Pereira,A.C.; Mota,G.A.; Benseñor,I.; Lotufo,P.A.; Krieger,J.E..
Previous genetic association studies have overlooked the potential for biased results when analyzing different population structures in ethnically diverse populations. The purpose of the present study was to quantify this bias in two-locus association studies conducted on an admixtured urban population. We studied the genetic structure distribution of angiotensin-converting enzyme insertion/deletion (ACE I/D) and angiotensinogen methionine/threonine (M/T) polymorphisms in 382 subjects from three subgroups in a highly admixtured urban population. Group I included 150 white subjects; group II, 142 mulatto subjects, and group III, 90 black subjects. We conducted sample size simulation studies using these data in different genetic models of gene action and...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Hypertension; Association study; Genetics; Angiotensin-converting enzyme; ACE; Angiotensinogen.
Ano: 2001 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2001001100008
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Association between the -174 G/C promoter polymorphism of the interleukin-6 gene and cardiovascular disease risk factors in Brazilian older women 56
Tonet,A.C; Karnikowski,M; Moraes,C.F; Gomes,L; Karnikowski,M.G.O; Córdova,C; Nóbrega,O.T.
In worldwide studies, interleukin-6 (IL-6) is implicated in age-related disturbances. The aim of the present report was to determine the possible association of IL-6 -174 C/G promoter polymorphism with the cytokine profile as well as with the presence of selected cardiovascular risk features. This was a cross-sectional study on Brazilian women aged 60 years or older. A sample of 193 subjects was investigated for impaired glucose regulation, diabetes, hypertension, and dyslipidemia. Genotyping was done by direct sequencing of PCR products. IL-6 and C-reactive protein were quantified by high-sensitivity assays. General linear regression models or the Student t-test were used to compare continuous variables among genotypes, followed by adjustments for...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Cytokine; Interleukin-6; Genetics; Elderly; Cardiovascular disease; Brazil.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2008000100008
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Polymorphisms of the low-density lipoprotein receptor gene in Brazilian individuals with heterozygous familial hypercholesterolemia 56
Salazar,L.A.; Cavalli,S.A.; Hirata,M.H.; Diament,J.; Forti,N.; Giannini,S.D.; Nakandakare,E.R.; Bertolami,M.C.; Hirata,R.D.C..
Familial hypercholesterolemia (FH) is a metabolic disorder inherited as an autosomal dominant trait characterized by an increased plasma low-density lipoprotein (LDL) level. The disease is caused by several different mutations in the LDL receptor gene. Although early identification of individuals carrying the defective gene could be useful in reducing the risk of atherosclerosis and myocardial infarction, the techniques available for determining the number of the functional LDL receptor molecules are difficult to carry out and expensive. Polymorphisms associated with this gene may be used for unequivocal diagnosis of FH in several populations. The aim of our study was to evaluate the genotype distribution and relative allele frequencies of three...
Tipo: Info:eu-repo/semantics/other Palavras-chave: Familial hypercholesterolemia; DNA polymorphism; Atherosclerosis; Genetics; LDL receptor.
Ano: 2000 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2000001100006
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Analysis of renin-angiotensin-aldosterone system gene polymorphisms in resistant hypertension 56
Freitas,S.R.S.; Cabello,P.H.; Moura-Neto,R.S.; Dolinsky,L.C.; Lima,A.B.; Barros,M.; Bittencourt,I.; Cordovil,I.L..
Essential hypertension is a disease multifactorially triggered by genetic and environmental factors. The contribution of genetic polymorphisms of the renin-angiotensin-aldosterone system and clinical risk factors to the development of resistant hypertension was evaluated in 90 hypertensive patients and in 115 normotensive controls living in Southwestern Brazil. Genotyping for insertion/deletion of angiotensin-converting enzyme, angiotensinogen M235T, angiotensin II type 1 receptor A1166C, aldosterone synthase C344T, and mineralocorticoid receptor A4582C polymorphisms was performed by PCR, with further restriction analysis when required. The influence of genetic polymorphisms on blood pressure variation was assessed by analysis of the odds ratio, while...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Essential hypertension; Renin-angiotensin- aldosterone system; Polymorphisms; Genetics.
Ano: 2007 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2007000300005
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Idiopathic focal segmental glomerulosclerosis and HLA antigens 56
Gerbase-DeLima,M.; Pereira-Santos,A.; Sesso,R.; Temin,J.; Aragão,E.S.; Ajzen,H..
The objective of the present study was to investigate a possible association between HLA class II antigens and idiopathic focal segmental glomerulosclerosis (FSGS). HLA-A, -B, -DR and -DQ antigens were determined in 19 Brazilian patients (16 white subjects and three subjects of Japanese origin) with biopsy-proven FSGS. Comparison of the HLA antigen frequencies between white patients and white local controls showed a significant increase in HLA-DR4 frequency among FSGS patients (37.7 vs 17.2%, P<0.05). In addition, the three patients of Japanese extraction, not included in the statistical analysis, also presented HLA-DR4. In conclusion, our data confirm the association of FSGS with HLA-DR4 previously reported by others, thus providing further...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Focal segmental glomerulosclerosis; Genetics; HLA antigens; MHC.
Ano: 1998 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X1998000300010
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p53 immunostaining is correlated with reduced survival and is not correlated with gene mutations in resected pulmonary large cell carcinomas 56
Massoni Neto,L.M.; Bianchi,C.P.; Ab'Saber,A.M.; Parra,E.R.; Takagaki,T.; Pereira,J.C.; Soares,F.A.; Leite,K.; Capelozzi,V.L..
Malignancy of pulmonary large cell carcinomas (LCC) increases from classic LCC through LCC with neuroendocrine morphology (LCCNM) to large cell neuroendocrine carcinomas (LCNEC). However, the histological classification has sometimes proved to be difficult. Because the malignancy of LCC is highly dependent on proteins with functions in the cell cycle, DNA repair, and apoptosis, p53 has been targeted as a potentially useful biological marker. p53 mutations in lung cancers have been shown to result in expression and protein expression also occurs in the absence of mutations. To validate the importance of both p53 protein expression (by immunostaining) and p53 gene mutations in lung LCC (by PCR-single strand conformational polymorphism analysis of exons 5, 6,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Large cell carcinoma; P53; Genetics; Molecular biology; Lung cancer; Mutation analysis.
Ano: 2007 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2007000800004
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Recent updated aspects of colicins of Enterobacteriaceae 58
Cursino,Luciana; Šmarda,Jan; Chartone-Souza,Edmar; Nascimento,Andréa M.A..
The colicins are protein compounds produced by, and active against, Escherichia coli and others members of Enterobacteriaceae family. At least 34 different colicins have been described and found to share an interesting number of features. In the present review we focus on the major characteristics of colicins of gram-negative bacteria and explore their production and practical applications.The colicins are protein compounds produced by, and active against, Escherichia coli and others members of Enterobacteriaceae family. At least 34 different colicins have been described and found to share an interesting number of features. In the present review we focus on the major characteristics of colicins of gram-negative bacteria and explore their production and...
Tipo: Info:eu-repo/semantics/report Palavras-chave: Colicins; Escherichia coli; Genetics; Evolution; Ecology.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822002000300001
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Brief history of Eucalyptus breeding in Brazil under perspective of biometric advances 65
Castro,Carla Aparecida de Oliveira; Resende,Rafael Tassinari; Bhering,Leonardo Lopes; Cruz,Cosme Damião.
ABSTRACT: Forest breeding is a science that has been developing in Brazil since 1941 being the Eucalyptus a highlighted genus in this scenario. In a global scene, Brazil is displayed prominently in productivity of Eucalyptus planting, due to favorable environmental conditions to cultivation development, and the incentive in research for improvement of traits of interest t observed in it species and hybrids. This research included a historical review of Eucalyptus breeding over the years under genetic biometric perspective in Brazil, from reports describing the pioneer planting up to the current genome wide selection (GWS) that came as a complement of forest breeding success. This review showed some of the tracks performed by researchers aiming to improve...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Genetics; Crossing; History; Current scenario; Biometry; Genomic.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782016000901585
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From ecosystems to human welfare: the role and conservation of biodiversity 65
Zhang,Zhenguo; Zhou,Jun.
ABSTRACT: Biodiversity plays a key role in human welfare by providing agricultural, economic, and health benefits. However, following the industrial revolution, the rapid expansion of the human population and subsequent economic activities have caused a dramatic loss in global biodiversity, resulting in significant disturbances to ecosystems and our own living conditions. Accordingly, the conservation of biodiversity has become one of the most important challenges for humanity. The vast numbers of plants, animals, and microorganisms, the enormous genetic diversity of these species and the different ecosystems to which these organisms belong are all part of a biologically diverse planet. A substantial proportion of the world’s biodiversity has been...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Biodiversity; Ecosystem; Agriculture; Conservation; Genetics; Human welfare.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782019000500400
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Piloting a Non-Invasive Genetic Sampling Method for Evaluating Population-Level Benefits of Wildlife Crossing Structures 7
Clevenger, Anthony P; Western Transportation Institute, Montana State University; apclevenger@gmail.com; Sawaya, Michael A; Department of Ecology, Montana State University; mikesawaya@hotmail.com.
Intuitively, wildlife crossing structures should enhance the viability of wildlife populations. Previous research has demonstrated that a broad range of species will use crossing structures, however, questions remain as to whether these measures actually provide benefits to populations. To assess this, studies will need to determine the number of individuals using crossings, their sex, and their genetic relationships. Obtaining empirical data demonstrating population-level benefits for some species can be problematic and challenging at best. Molecular techniques now make it possible to identify species, individuals, their sex, and their genetic relatedness from hair samples collected through non-invasive genetic sampling (NGS). We describe efforts to pilot...
Tipo: Peer-Reviewed Reports Palavras-chave: Banff National Park; DNA; Genetics; Non-invasive; Road ecology; Ursus americanus; Ursus arctos; Wildlife crossing structure.
Ano: 2010
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Evaluation of computer methods for biomarker discovery on computational grids 69
Tonini,Gustavo; Siqueira,Frank.
Background: Discovering biomarkers is a fundamental step to understand and deal with genetic diseases. Methods using classic Computer Science algorithms have been adapted in order to support processing large biological data sets, aiming to find useful information to understand causing conditions of diseases such as cancer. Results: This paper describes some promising biomarker discovery methods based on several grid architectures. Each technique has some features that make it more suitable for a particular grid architecture. This matching depends on the parallelizing capabilities of the method and the resource availability in each processing/storage node. Conclusion: The study described in this paper analyzed the performance of biomarker discovery methods...
Tipo: Journal article Palavras-chave: Feature selection; Genetics; Parallel computing; Pattern detection; Performance.
Ano: 2013 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-34582013000500013
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Growth Hormone insensitivity (Laron syndrome): Report of a new family and review of Brazilian patients 74
Villela,Thais R.; Freire,Bruna L.; Braga,Nathalia T. P.; Arantes,Rodrigo R.; Funari,Mariana F. A.; Alexander,Jorge A L; Silva,Ivani N..
Abstract Laron’s syndrome (LS) is a rare genetic disorder characterized by insensitivity to growth hormone (GH). Up to the present time, over 70 mutations of GH receptor (GHR) gene have been identified leading to GH/insulin-like growth factor type 1 (IGF1) signaling pathway defect. The number of LS patients worldwide is unknown, as many are probably undiagnosed. We report two sibs from a consanguineous family from Minas Gerais, southeastern Brazil. The parents have three children. The older, a 4-years-old girl was 80.2 cm tall (-5.7 SDS height/age), and the youngest sister, aged 3 years, was 73.2 cm tall (-5.82 SDS height/age). Their clinical and biochemical features are typical of LS patients, such as high serum level of GH and low IGF1 concentrations. A...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Laron Syndrome; Growth hormone; Growth hormone receptor; Genetics.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572019000500102
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Uniparental genetic markers in South Amerindians 74
Bisso-Machado,Rafael; Bortolini,Maria Cátira; Salzano,Francisco Mauro.
A comprehensive review of uniparental systems in South Amerindians was undertaken. Variability in the Y-chromosome haplogroups were assessed in 68 populations and 1,814 individuals whereas that of Y-STR markers was assessed in 29 populations and 590 subjects. Variability in the mitochondrial DNA (mtDNA) haplogroup was examined in 108 populations and 6,697 persons, and sequencing studies used either the complete mtDNA genome or the highly variable segments 1 and 2. The diversity of the markers made it difficult to establish a general picture of Y-chromosome variability in the populations studied. However, haplogroup Q1a3a* was almost always the most prevalent whereas Q1a3* occurred equally in all regions, which suggested its prevalence among the early...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Genetics; Language and geography; Mitochondrial DNA; Native Americans; South Amerindians; Y-chromosome.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000300001
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Polymorphism in the promoter region of von Willebrand factor gene and von Willebrand disease type 1 74
Simon,Daniel; Bandinelli,Eliane; Roisenberg,Israel.
The -1185A/G polymorphism in the 5'-regulatory region of the von Willebrand factor (VWF) gene was associated with VWF plasma levels in a normal population. This study was undertaken to evaluate whether there is a relationship between this polymorphism and type 1 von Willebrand disease (VWD), a disorder characterized by a quantitative deficiency of VWF. The association between this polymorphism and plasma VWF levels in normal Brazilian individuals was also analyzed. Control subjects (n = 460) and type 1 VWD patients (n = 41) were studied. Polymerase chain reaction (PCR) amplification of the 864-bp VWF promoter region followed by AccII restriction-digestion was used to identify the -1185A/G genotypes. The -1185G allele frequency was 57% in normal individuals...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Von Willebrand factor; Promoter polymorphisms; Genetics; Von Willebrand disease.
Ano: 2003 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572003000400001
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